RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 ADCY10Q96PN6 1610 aa9.99□□□□□ -0.81
VMA21-201ENST00000330374 C22orf23Q9BZE7 217 aa9.99□□□□□ -0.81
VMA21-201ENST00000330374 MORC1Q86VD1 984 aa9.98□□□□□ -0.81
VMA21-201ENST00000330374 RWDD1Q9H446 243 aaPredicted RBP9.98□□□□□ -0.81
VMA21-201ENST00000330374 CDK11BP21127 795 aaKnown RBP9.98□□□□□ -0.81
VMA21-201ENST00000330374 AEBP1Q8IUX7 1158 aa9.98□□□□□ -0.81
VMA21-201ENST00000330374 ASXL1Q8IXJ9 1541 aa9.97□□□□□ -0.81
VMA21-201ENST00000330374 HSP90AA1P07900 732 aaKnown RBP9.97□□□□□ -0.81
VMA21-201ENST00000330374 IFT140Q96RY7 1462 aa9.97□□□□□ -0.81
VMA21-201ENST00000330374 RGL2O15211 777 aa9.97□□□□□ -0.81
VMA21-201ENST00000330374 TSR2Q969E8 191 aaKnown RBP9.97□□□□□ -0.81
VMA21-201ENST00000330374 SYCP2Q9BX26 1530 aa9.96□□□□□ -0.81
VMA21-201ENST00000330374 HSP90AA2PQ14568 343 aaPredicted RBP9.96□□□□□ -0.82
VMA21-201ENST00000330374 HSCBQ8IWL3 235 aa9.96□□□□□ -0.82
VMA21-201ENST00000330374 ITPRIPQ8IWB1 547 aa9.96□□□□□ -0.82
VMA21-201ENST00000330374 MYH16Q9H6N6 1097 aa9.96□□□□□ -0.82
VMA21-201ENST00000330374 CHMP5Q9NZZ3 219 aa9.96□□□□□ -0.82
VMA21-201ENST00000330374 STK25O00506 426 aa9.95□□□□□ -0.82
VMA21-201ENST00000330374 ARHGAP5Q13017 1502 aa9.95□□□□□ -0.82
VMA21-201ENST00000330374 PIK3C2GO75747 1445 aa9.95□□□□□ -0.82
VMA21-201ENST00000330374 RSPH4AQ5TD94 716 aa9.95□□□□□ -0.82
VMA21-201ENST00000330374 GLIPR1L2Q4G1C9 344 aa9.95□□□□□ -0.82
VMA21-201ENST00000330374 TRIM44Q96DX7 344 aaPredicted RBP9.95□□□□□ -0.82
VMA21-201ENST00000330374 NLRP1Q9C000 1473 aa9.95□□□□□ -0.82
VMA21-201ENST00000330374 U2AF1L5P0DN76 240 aaPredicted RBP9.94□□□□□ -0.82
VMA21-201ENST00000330374 U2AF1Q01081 240 aaKnown RBP eCLIP9.94□□□□□ -0.82
VMA21-201ENST00000330374 SLC12A5Q9H2X9 1139 aa9.94□□□□□ -0.82
VMA21-201ENST00000330374 MYO5CQ9NQX4 1742 aa9.94□□□□□ -0.82
VMA21-201ENST00000330374 SMC4Q9NTJ3 1288 aa9.94□□□□□ -0.82
VMA21-201ENST00000330374 SAMD9LQ8IVG5 1584 aa9.94□□□□□ -0.82
VMA21-201ENST00000330374 TRAK1Q9UPV9 953 aa9.94□□□□□ -0.82
VMA21-201ENST00000330374 RUNDC1Q96C34 613 aa9.94□□□□□ -0.82
VMA21-201ENST00000330374 PKNOX2Q96KN3 472 aa9.94□□□□□ -0.82
VMA21-201ENST00000330374 GRPEL1Q9HAV7 217 aa9.94□□□□□ -0.82
VMA21-201ENST00000330374 MTHFSP49914 203 aa9.93□□□□□ -0.82
VMA21-201ENST00000330374 HSP90AB1P08238 724 aaKnown RBP9.93□□□□□ -0.82
VMA21-201ENST00000330374 FSD2A1L4K1 749 aa9.93□□□□□ -0.82
VMA21-201ENST00000330374 U2SURPO15042 1029 aaKnown RBP9.92□□□□□ -0.82
VMA21-201ENST00000330374 DZIP1LQ8IYY4 767 aaKnown RBP9.92□□□□□ -0.82
VMA21-201ENST00000330374 MRE11P49959 708 aa9.92□□□□□ -0.82
VMA21-201ENST00000330374 LNPKQ9C0E8 428 aa9.92□□□□□ -0.82
VMA21-201ENST00000330374 SYNJ2O15056 1496 aa9.92□□□□□ -0.82
VMA21-201ENST00000330374 SCAF11Q99590 1463 aaKnown RBP9.92□□□□□ -0.82
VMA21-201ENST00000330374 HMGB1P09429 215 aaKnown RBP9.92□□□□□ -0.82
VMA21-201ENST00000330374 CLCN1P35523 988 aa9.92□□□□□ -0.82
VMA21-201ENST00000330374 MVPQ14764 893 aaKnown RBP9.92□□□□□ -0.82
VMA21-201ENST00000330374 AFAP1Q8N556 730 aa9.92□□□□□ -0.82
VMA21-201ENST00000330374 EIF2AK4Q9P2K8 1649 aaKnown RBP9.92□□□□□ -0.82
VMA21-201ENST00000330374 ZKSCAN2Q63HK3 967 aa9.92□□□□□ -0.82
VMA21-201ENST00000330374 LMOD2Q6P5Q4 547 aa9.92□□□□□ -0.82
VMA21-201ENST00000330374 ERBB4Q15303 1308 aa9.92□□□□□ -0.82
VMA21-201ENST00000330374 SAFB2Q14151 953 aaKnown RBP eCLIP9.91□□□□□ -0.82
VMA21-201ENST00000330374 NUP160Q12769 1436 aa9.91□□□□□ -0.82
VMA21-201ENST00000330374 ESPNB1AK53 854 aa9.91□□□□□ -0.82
VMA21-201ENST00000330374 ADGRF5Q8IZF2 1346 aa9.91□□□□□ -0.82
VMA21-201ENST00000330374 ABCA8O94911 1581 aa9.91□□□□□ -0.82
VMA21-201ENST00000330374 NPM1P06748 294 aaKnown RBP eCLIP9.91□□□□□ -0.82
VMA21-201ENST00000330374 ZMYND15Q9H091 742 aa9.91□□□□□ -0.82
VMA21-201ENST00000330374 EXOSC9Q06265 439 aaKnown RBP9.9□□□□□ -0.82
VMA21-201ENST00000330374 NUTM2DQ5VT03 806 aaPredicted RBP9.9□□□□□ -0.82
VMA21-201ENST00000330374 GAS2L3Q86XJ1 694 aa9.9□□□□□ -0.82
VMA21-201ENST00000330374 ARHGEF5Q12774 1597 aa9.9□□□□□ -0.82
VMA21-201ENST00000330374 TMEM132EQ6IEE7 984 aa9.9□□□□□ -0.83
VMA21-201ENST00000330374 TNPO1Q92973 898 aaKnown RBP9.9□□□□□ -0.83
VMA21-201ENST00000330374 ABCC2Q92887 1545 aa9.9□□□□□ -0.83
VMA21-201ENST00000330374 ZNF219Q9P2Y4 722 aaPredicted RBP9.89□□□□□ -0.83
VMA21-201ENST00000330374 NSD3Q9BZ95 1437 aa9.89□□□□□ -0.83
VMA21-201ENST00000330374 NINLQ9Y2I6 1382 aa9.89□□□□□ -0.83
VMA21-201ENST00000330374 DDX11L8A8MPP1 907 aa9.89□□□□□ -0.83
VMA21-201ENST00000330374 NCLP19338 710 aaKnown RBP9.89□□□□□ -0.83
VMA21-201ENST00000330374 KIF3BO15066 747 aa9.89□□□□□ -0.83
VMA21-201ENST00000330374 CFAP53Q96M91 514 aa9.89□□□□□ -0.83
VMA21-201ENST00000330374 TRIM27P14373 513 aa9.88□□□□□ -0.83
VMA21-201ENST00000330374 DCAF8Q5TAQ9 597 aa9.88□□□□□ -0.83
VMA21-201ENST00000330374 CDC42BPBQ9Y5S2 1711 aa9.88□□□□□ -0.83
VMA21-201ENST00000330374 CLASP1Q7Z460 1538 aa9.88□□□□□ -0.83
VMA21-201ENST00000330374 ERCC6Q03468 1493 aa9.88□□□□□ -0.83
VMA21-201ENST00000330374 VIRMAQ69YN4 1812 aaKnown RBP9.88□□□□□ -0.83
VMA21-201ENST00000330374 SSH1Q8WYL5 1049 aa9.88□□□□□ -0.83
VMA21-201ENST00000330374 RBM42Q9BTD8 480 aaKnown RBP9.88□□□□□ -0.83
VMA21-201ENST00000330374 NOB1Q9ULX3 412 aaKnown RBP9.88□□□□□ -0.83
VMA21-201ENST00000330374 SYNMO15061 1565 aa9.88□□□□□ -0.83
VMA21-201ENST00000330374 C1orf115Q9H7X2 142 aa9.88□□□□□ -0.83
VMA21-201ENST00000330374 SPAG9O60271 1321 aaKnown RBP9.87□□□□□ -0.83
VMA21-201ENST00000330374 LAMC1P11047 1609 aa9.87□□□□□ -0.83
VMA21-201ENST00000330374 TMEM57Q8N5G2 664 aa9.87□□□□□ -0.83
VMA21-201ENST00000330374 NGEFQ8N5V2 710 aa9.87□□□□□ -0.83
VMA21-201ENST00000330374 WDR63Q8IWG1 891 aa9.87□□□□□ -0.83
VMA21-201ENST00000330374 EFCAB2Q5VUJ9 269 aa9.86□□□□□ -0.83
VMA21-201ENST00000330374 APBB1O00213 710 aa9.86□□□□□ -0.83
VMA21-201ENST00000330374 CD2BP2O95400 341 aaKnown RBP9.86□□□□□ -0.83
VMA21-201ENST00000330374 GBP4Q96PP9 640 aa9.86□□□□□ -0.83
VMA21-201ENST00000330374 NPC1L1Q9UHC9 1359 aa9.86□□□□□ -0.83
VMA21-201ENST00000330374 ANKRD45Q5TZF3 282 aa9.85□□□□□ -0.83
VMA21-201ENST00000330374 POLR3AO14802 1390 aaPredicted RBP9.85□□□□□ -0.83
VMA21-201ENST00000330374 UNC13BO14795 1591 aa9.85□□□□□ -0.83
VMA21-201ENST00000330374 RBM10P98175 930 aaKnown RBP9.85□□□□□ -0.83
VMA21-201ENST00000330374 ERVK-7P63135 1459 aa9.85□□□□□ -0.83
VMA21-201ENST00000330374 MADDQ8WXG6 1647 aa9.85□□□□□ -0.83
VMA21-201ENST00000330374 SSFA2P28290 1259 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms