RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SLC52A1Q9NWF4 448 aa26.43■■□□□ 1.82
VPS53-201ENST00000291074 FBXO31Q5XUX0 539 aaPredicted RBP26.42■■□□□ 1.82
VPS53-201ENST00000291074 SPINK5Q9NQ38 1064 aaPredicted RBP26.42■■□□□ 1.82
VPS53-201ENST00000291074 STK26Q9P289 416 aa26.42■■□□□ 1.82
VPS53-201ENST00000291074 SLFN5Q08AF3 891 aa26.41■■□□□ 1.82
VPS53-201ENST00000291074 SHPRHQ149N8 1683 aa26.41■■□□□ 1.82
VPS53-201ENST00000291074 POLR3AO14802 1390 aaPredicted RBP26.4■■□□□ 1.82
VPS53-201ENST00000291074 EVC2Q86UK5 1308 aa26.4■■□□□ 1.82
VPS53-201ENST00000291074 CABP2Q9NPB3 220 aa26.4■■□□□ 1.82
VPS53-201ENST00000291074 USP32Q8NFA0 1604 aa26.38■■□□□ 1.81
VPS53-201ENST00000291074 ZFYVE9O95405 1425 aa26.37■■□□□ 1.81
VPS53-201ENST00000291074 DMRT2Q9Y5R5 561 aa26.37■■□□□ 1.81
VPS53-201ENST00000291074 TRMT2AQ8IZ69 625 aaKnown RBP26.34■■□□□ 1.81
VPS53-201ENST00000291074 CGNL1Q0VF96 1302 aa26.34■■□□□ 1.81
VPS53-201ENST00000291074 ANKRD36BQ8N2N9 1353 aa26.33■■□□□ 1.81
VPS53-201ENST00000291074 PTPRMP28827 1452 aa26.3■■□□□ 1.8
VPS53-201ENST00000291074 MTHFSP49914 203 aa26.3■■□□□ 1.8
VPS53-201ENST00000291074 NKTRP30414 1462 aaKnown RBP26.3■■□□□ 1.8
VPS53-201ENST00000291074 SKAP1Q86WV1 359 aa26.3■■□□□ 1.8
VPS53-201ENST00000291074 PUS7Q96PZ0 661 aaKnown RBP26.29■■□□□ 1.8
VPS53-201ENST00000291074 CLTCQ00610 1675 aaKnown RBP26.29■■□□□ 1.8
VPS53-201ENST00000291074 SRPK2P78362 688 aaKnown RBP26.29■■□□□ 1.8
VPS53-201ENST00000291074 ERICH6Q7L0X2 663 aa26.28■■□□□ 1.8
VPS53-201ENST00000291074 MINK1Q8N4C8 1332 aaPredicted RBP26.28■■□□□ 1.8
VPS53-201ENST00000291074 PRAM1Q96QH2 718 aa26.27■■□□□ 1.8
VPS53-201ENST00000291074 E9PSI1 815 aa26.27■■□□□ 1.8
VPS53-201ENST00000291074 RRP7AQ9Y3A4 280 aaKnown RBP26.27■■□□□ 1.8
VPS53-201ENST00000291074 YTHDC2Q9H6S0 1430 aaKnown RBP26.27■■□□□ 1.8
VPS53-201ENST00000291074 NEUROD2Q15784 382 aa26.26■■□□□ 1.79
VPS53-201ENST00000291074 A0A1W2PP64 1363 aa26.26■■□□□ 1.79
VPS53-201ENST00000291074 STAG3Q9UJ98 1225 aa26.26■■□□□ 1.79
VPS53-201ENST00000291074 TCERG1O14776 1098 aaKnown RBP26.25■■□□□ 1.79
VPS53-201ENST00000291074 WWC1Q8IX03 1113 aa26.25■■□□□ 1.79
VPS53-201ENST00000291074 ALKQ9UM73 1620 aa26.25■■□□□ 1.79
VPS53-201ENST00000291074 MLECQ14165 292 aa26.24■■□□□ 1.79
VPS53-201ENST00000291074 BCAR3O75815 825 aa26.24■■□□□ 1.79
VPS53-201ENST00000291074 POGKQ9P215 609 aa26.23■■□□□ 1.79
VPS53-201ENST00000291074 REREQ9P2R6 1566 aa26.23■■□□□ 1.79
VPS53-201ENST00000291074 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.22■■□□□ 1.79
VPS53-201ENST00000291074 IQSEC2Q5JU85 1478 aa26.22■■□□□ 1.79
VPS53-201ENST00000291074 RUNDC1Q96C34 613 aa26.22■■□□□ 1.79
VPS53-201ENST00000291074 AGLP35573 1532 aa26.21■■□□□ 1.79
VPS53-201ENST00000291074 NSD2O96028 1365 aa26.21■■□□□ 1.79
VPS53-201ENST00000291074 TCP11L2Q8N4U5 519 aa26.21■■□□□ 1.79
VPS53-201ENST00000291074 NGEFQ8N5V2 710 aa26.21■■□□□ 1.79
VPS53-201ENST00000291074 CFAP53Q96M91 514 aa26.2■■□□□ 1.78
VPS53-201ENST00000291074 ABCC11Q96J66 1382 aa26.19■■□□□ 1.78
VPS53-201ENST00000291074 GGNBP2Q9H3C7 697 aa26.19■■□□□ 1.78
VPS53-201ENST00000291074 KDM2BQ8NHM5 1336 aa26.17■■□□□ 1.78
VPS53-201ENST00000291074 PDE4AP27815 886 aa26.17■■□□□ 1.78
VPS53-201ENST00000291074 ANP32AP39687 249 aaKnown RBP26.17■■□□□ 1.78
VPS53-201ENST00000291074 CD163L1Q9NR16 1453 aa26.16■■□□□ 1.78
VPS53-201ENST00000291074 A2ML1A8K2U0 1454 aa26.16■■□□□ 1.78
VPS53-201ENST00000291074 NINLQ9Y2I6 1382 aa26.16■■□□□ 1.78
VPS53-201ENST00000291074 ATAD2Q6PL18 1390 aa26.15■■□□□ 1.78
VPS53-201ENST00000291074 SPATA31D1Q6ZQQ2 1576 aa26.15■■□□□ 1.78
VPS53-201ENST00000291074 PAK3O75914 559 aaPredicted RBP26.14■■□□□ 1.78
VPS53-201ENST00000291074 U2AF1L5P0DN76 240 aaPredicted RBP26.13■■□□□ 1.77
VPS53-201ENST00000291074 U2AF1Q01081 240 aaKnown RBP eCLIP26.13■■□□□ 1.77
VPS53-201ENST00000291074 NOP58Q9Y2X3 529 aaKnown RBP26.13■■□□□ 1.77
VPS53-201ENST00000291074 MS4A1P11836 297 aa26.13■■□□□ 1.77
VPS53-201ENST00000291074 CDK19Q9BWU1 502 aa26.12■■□□□ 1.77
VPS53-201ENST00000291074 BACH2Q9BYV9 841 aa26.12■■□□□ 1.77
VPS53-201ENST00000291074 RIMS2Q9UQ26 1411 aa26.11■■□□□ 1.77
VPS53-201ENST00000291074 ANKRD26Q9UPS8 1709 aa26.11■■□□□ 1.77
VPS53-201ENST00000291074 NPM2Q86SE8 214 aaKnown RBP26.11■■□□□ 1.77
VPS53-201ENST00000291074 PHF23Q9BUL5 403 aaPredicted RBP26.11■■□□□ 1.77
VPS53-201ENST00000291074 TERF2IPQ9NYB0 399 aa26.11■■□□□ 1.77
VPS53-201ENST00000291074 PPP6R1Q9UPN7 881 aa26.11■■□□□ 1.77
VPS53-201ENST00000291074 ARHGEF40Q8TER5 1519 aa26.11■■□□□ 1.77
VPS53-201ENST00000291074 KIF13AQ9H1H9 1805 aa26.11■■□□□ 1.77
VPS53-201ENST00000291074 SETD1AO15047 1707 aaKnown RBP26.1■■□□□ 1.77
VPS53-201ENST00000291074 FYB1O15117 783 aa26.1■■□□□ 1.77
VPS53-201ENST00000291074 WAPLQ7Z5K2 1190 aa26.1■■□□□ 1.77
VPS53-201ENST00000291074 IPO9Q96P70 1041 aaKnown RBP26.1■■□□□ 1.77
VPS53-201ENST00000291074 CENPQQ7L2Z9 268 aaPredicted RBP26.09■■□□□ 1.77
VPS53-201ENST00000291074 NLRP1Q9C000 1473 aa26.09■■□□□ 1.77
VPS53-201ENST00000291074 CABP1Q9NZU7 370 aa26.08■■□□□ 1.76
VPS53-201ENST00000291074 ADGRB2O60241 1585 aa26.06■■□□□ 1.76
VPS53-201ENST00000291074 COL3A1P02461 1466 aaPredicted RBP26.06■■□□□ 1.76
VPS53-201ENST00000291074 U2SURPO15042 1029 aaKnown RBP26.05■■□□□ 1.76
VPS53-201ENST00000291074 WDR63Q8IWG1 891 aa26.04■■□□□ 1.76
VPS53-201ENST00000291074 KIF20BQ96Q89 1820 aa26.04■■□□□ 1.76
VPS53-201ENST00000291074 CANXP27824 592 aaKnown RBP26.04■■□□□ 1.76
VPS53-201ENST00000291074 HDGFL2Q7Z4V5 671 aaPredicted RBP26.04■■□□□ 1.76
VPS53-201ENST00000291074 PANK1Q8TE04 598 aa26.03■■□□□ 1.76
VPS53-201ENST00000291074 NRXN3Q9Y4C0 1643 aa26.03■■□□□ 1.76
VPS53-201ENST00000291074 CCDC27Q2M243 656 aa26.02■■□□□ 1.76
VPS53-201ENST00000291074 FRAT1Q92837 279 aaPredicted RBP26.02■■□□□ 1.76
VPS53-201ENST00000291074 DLC1Q96QB1 1528 aa26.01■■□□□ 1.75
VPS53-201ENST00000291074 MED14O60244 1454 aa26.01■■□□□ 1.75
VPS53-201ENST00000291074 RARSP54136 660 aaKnown RBP26.01■■□□□ 1.75
VPS53-201ENST00000291074 COG6Q9Y2V7 657 aa26.01■■□□□ 1.75
VPS53-201ENST00000291074 BCL2L13Q9BXK5 485 aa26■■□□□ 1.75
VPS53-201ENST00000291074 PDE3AQ14432 1141 aa25.99■■□□□ 1.75
VPS53-201ENST00000291074 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.99■■□□□ 1.754e-6■■■■□ 21.2
VPS53-201ENST00000291074 ZMYM3Q14202 1370 aa25.98■■□□□ 1.75
VPS53-201ENST00000291074 PLEKHF1Q96S99 279 aa25.98■■□□□ 1.75
VPS53-201ENST00000291074 TNNQ9UQP3 1299 aa25.98■■□□□ 1.75
VPS53-201ENST00000291074 ESF1Q9H501 851 aaKnown RBP25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms