RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 TRHP20396 242 aaPredicted RBP16.78■□□□□ 0.28
SNX1-201ENST00000261889 CLTCQ00610 1675 aaKnown RBP16.78■□□□□ 0.28
SNX1-201ENST00000261889 PTPRTO14522 1441 aa16.78■□□□□ 0.28
SNX1-201ENST00000261889 PLA2R1Q13018 1463 aa16.78■□□□□ 0.28
SNX1-201ENST00000261889 SAFB2Q14151 953 aaKnown RBP eCLIP16.77■□□□□ 0.28
SNX1-201ENST00000261889 RLBP1P12271 317 aa16.77■□□□□ 0.28
SNX1-201ENST00000261889 CFAP70Q5T0N1 1121 aa16.77■□□□□ 0.27
SNX1-201ENST00000261889 TRPM2O94759 1503 aa16.77■□□□□ 0.27
SNX1-201ENST00000261889 PREX1Q8TCU6 1659 aa16.76■□□□□ 0.27
SNX1-201ENST00000261889 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.75■□□□□ 0.27
SNX1-201ENST00000261889 FER1L4A9Z1Z3 1794 aa16.74■□□□□ 0.27
SNX1-201ENST00000261889 BLMP54132 1417 aaPredicted RBP16.74■□□□□ 0.27
SNX1-201ENST00000261889 USP19O94966 1318 aa16.74■□□□□ 0.27
SNX1-201ENST00000261889 SYNMO15061 1565 aa16.73■□□□□ 0.27
SNX1-201ENST00000261889 PANK2Q9BZ23 570 aa16.73■□□□□ 0.27
SNX1-201ENST00000261889 FOXD4L1Q9NU39 408 aa16.73■□□□□ 0.27
SNX1-201ENST00000261889 PCDHB15Q9Y5E8 787 aa16.73■□□□□ 0.27
SNX1-201ENST00000261889 SPATA31D1Q6ZQQ2 1576 aa16.72■□□□□ 0.27
SNX1-201ENST00000261889 CARD14Q9BXL6 1004 aa16.72■□□□□ 0.27
SNX1-201ENST00000261889 PPP6R1Q9UPN7 881 aa16.72■□□□□ 0.27
SNX1-201ENST00000261889 IFT172Q9UG01 1749 aa16.71■□□□□ 0.27
SNX1-201ENST00000261889 C3P01024 1663 aa16.71■□□□□ 0.27
SNX1-201ENST00000261889 CLTCL1P53675 1640 aa16.71■□□□□ 0.26
SNX1-201ENST00000261889 MFAP1P55081 439 aaKnown RBP16.71■□□□□ 0.26
SNX1-201ENST00000261889 KDM5AP29375 1690 aaKnown RBP16.7■□□□□ 0.26
SNX1-201ENST00000261889 CENPJQ9HC77 1338 aaPredicted RBP16.7■□□□□ 0.26
SNX1-201ENST00000261889 NOS1P29475 1434 aa16.7■□□□□ 0.26
SNX1-201ENST00000261889 RRAGDQ9NQL2 400 aaPredicted RBP16.69■□□□□ 0.26
SNX1-201ENST00000261889 TRAK1Q9UPV9 953 aa16.69■□□□□ 0.26
SNX1-201ENST00000261889 NPATQ14207 1427 aa16.69■□□□□ 0.26
SNX1-201ENST00000261889 TSR2Q969E8 191 aaKnown RBP16.69■□□□□ 0.26
SNX1-201ENST00000261889 TMEM132EQ6IEE7 984 aa16.69■□□□□ 0.26
SNX1-201ENST00000261889 ZNF521Q96K83 1311 aa16.68■□□□□ 0.26
SNX1-201ENST00000261889 SLC12A5Q9H2X9 1139 aa16.68■□□□□ 0.26
SNX1-201ENST00000261889 PDZRN3Q9UPQ7 1066 aa16.66■□□□□ 0.26
SNX1-201ENST00000261889 WWC1Q8IX03 1113 aa16.66■□□□□ 0.26
SNX1-201ENST00000261889 KIF3BO15066 747 aa16.65■□□□□ 0.26
SNX1-201ENST00000261889 MADDQ8WXG6 1647 aa16.65■□□□□ 0.26
SNX1-201ENST00000261889 TBC1D2Q9BYX2 928 aa16.64■□□□□ 0.25
SNX1-201ENST00000261889 TCP11L2Q8N4U5 519 aa16.63■□□□□ 0.25
SNX1-201ENST00000261889 ADGRF5Q8IZF2 1346 aa16.63■□□□□ 0.25
SNX1-201ENST00000261889 TRPM1Q7Z4N2 1603 aa16.63■□□□□ 0.25
SNX1-201ENST00000261889 KANK1Q14678 1352 aa16.63■□□□□ 0.25
SNX1-201ENST00000261889 ADGRB3O60242 1522 aa16.62■□□□□ 0.25
SNX1-201ENST00000261889 KIF1BO60333 1816 aa16.62■□□□□ 0.25
SNX1-201ENST00000261889 MORC1Q86VD1 984 aa16.62■□□□□ 0.25
SNX1-201ENST00000261889 ERVK-7P63135 1459 aa16.62■□□□□ 0.25
SNX1-201ENST00000261889 E9PSI1 815 aa16.61■□□□□ 0.25
SNX1-201ENST00000261889 FBLN1P23142 703 aa16.61■□□□□ 0.25
SNX1-201ENST00000261889 TMEM131LA2VDJ0 1609 aa16.6■□□□□ 0.25
SNX1-201ENST00000261889 U2SURPO15042 1029 aaKnown RBP16.6■□□□□ 0.25
SNX1-201ENST00000261889 NAP1L5Q96NT1 182 aaPredicted RBP16.6■□□□□ 0.25
SNX1-201ENST00000261889 ZNF142P52746 1687 aaPredicted RBP16.59■□□□□ 0.25
SNX1-201ENST00000261889 RIMS1Q86UR5 1692 aaKnown RBP16.59■□□□□ 0.25
SNX1-201ENST00000261889 U2AF1L5P0DN76 240 aaPredicted RBP16.59■□□□□ 0.25
SNX1-201ENST00000261889 U2AF1Q01081 240 aaKnown RBP eCLIP16.59■□□□□ 0.25
SNX1-201ENST00000261889 NKTRP30414 1462 aaKnown RBP16.59■□□□□ 0.25
SNX1-201ENST00000261889 MYO5BQ9ULV0 1848 aa16.59■□□□□ 0.25
SNX1-201ENST00000261889 MTHFSP49914 203 aa16.58■□□□□ 0.25
SNX1-201ENST00000261889 PPLO60437 1756 aa16.58■□□□□ 0.25
SNX1-201ENST00000261889 RARSP54136 660 aaKnown RBP16.58■□□□□ 0.24
SNX1-201ENST00000261889 BECN1Q14457 450 aa16.58■□□□□ 0.24
SNX1-201ENST00000261889 GPRASP1Q5JY77 1395 aa16.58■□□□□ 0.24
SNX1-201ENST00000261889 UGGT1Q9NYU2 1555 aa16.58■□□□□ 0.24
SNX1-201ENST00000261889 FTSJ3Q8IY81 847 aaKnown RBP16.57■□□□□ 0.24
SNX1-201ENST00000261889 ITPRIPQ8IWB1 547 aa16.57■□□□□ 0.24
SNX1-201ENST00000261889 UPF2Q9HAU5 1272 aaKnown RBP16.56■□□□□ 0.24
SNX1-201ENST00000261889 UBR1Q8IWV7 1749 aa16.56■□□□□ 0.24
SNX1-201ENST00000261889 ELL2O00472 640 aaPredicted RBP16.55■□□□□ 0.24
SNX1-201ENST00000261889 XRCC6P12956 609 aaKnown RBP eCLIP16.55■□□□□ 0.24
SNX1-201ENST00000261889 C1orf115Q9H7X2 142 aa16.55■□□□□ 0.24
SNX1-201ENST00000261889 TRMT2AQ8IZ69 625 aaKnown RBP16.55■□□□□ 0.24
SNX1-201ENST00000261889 STK26Q9P289 416 aa16.55■□□□□ 0.24
SNX1-201ENST00000261889 MYO3AQ8NEV4 1616 aa16.54■□□□□ 0.24
SNX1-201ENST00000261889 ZBTB7CA1YPR0 619 aa16.54■□□□□ 0.24
SNX1-201ENST00000261889 CGNL1Q0VF96 1302 aa16.53■□□□□ 0.24
SNX1-201ENST00000261889 NRXN1Q9ULB1 1477 aa16.53■□□□□ 0.24
SNX1-201ENST00000261889 LNPKQ9C0E8 428 aa16.53■□□□□ 0.24
SNX1-201ENST00000261889 CFAP65Q6ZU64 1925 aaKnown RBP16.52■□□□□ 0.24
SNX1-201ENST00000261889 SMC4Q9NTJ3 1288 aa16.52■□□□□ 0.24
SNX1-201ENST00000261889 ZMYM3Q14202 1370 aa16.52■□□□□ 0.24
SNX1-201ENST00000261889 EIF3AQ14152 1382 aaKnown RBP16.51■□□□□ 0.23
SNX1-201ENST00000261889 ANTXR1Q9H6X2 564 aa16.51■□□□□ 0.23
SNX1-201ENST00000261889 KIAA1210Q9ULL0 1709 aa16.51■□□□□ 0.23
SNX1-201ENST00000261889 EXOSC9Q06265 439 aaKnown RBP16.51■□□□□ 0.23
SNX1-201ENST00000261889 CABP2Q9NPB3 220 aa16.51■□□□□ 0.23
SNX1-201ENST00000261889 CDCA8Q53HL2 280 aa16.5■□□□□ 0.23
SNX1-201ENST00000261889 TBC1D32Q96NH3 1257 aa16.5■□□□□ 0.23
SNX1-201ENST00000261889 GGNBP2Q9H3C7 697 aa16.5■□□□□ 0.23
SNX1-201ENST00000261889 NEXMIFQ5QGS0 1516 aa16.5■□□□□ 0.23
SNX1-201ENST00000261889 GGT6Q6P531 493 aa16.5■□□□□ 0.23
SNX1-201ENST00000261889 ARID3AQ99856 593 aa16.5■□□□□ 0.23
SNX1-201ENST00000261889 RBM42Q9BTD8 480 aaKnown RBP16.49■□□□□ 0.23
SNX1-201ENST00000261889 THUMPD2Q9BTF0 503 aaKnown RBP16.49■□□□□ 0.23
SNX1-201ENST00000261889 C22orf23Q9BZE7 217 aa16.49■□□□□ 0.23
SNX1-201ENST00000261889 ASXL1Q8IXJ9 1541 aa16.49■□□□□ 0.23
SNX1-201ENST00000261889 GOLGA6L3A6NEY3 463 aa16.49■□□□□ 0.23
SNX1-201ENST00000261889 FAM43AQ8N2R8 423 aa16.49■□□□□ 0.23
SNX1-201ENST00000261889 NSD3Q9BZ95 1437 aa16.48■□□□□ 0.23
SNX1-201ENST00000261889 LAMC1P11047 1609 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms