RNA–Protein interactions for RNA: ENST00000260653.4

SIX3-201, Transcript of SIX homeobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX3, Length 2,523 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3-201ENST00000260653 NLRP13Q86W25 1043 aa30.34■■■□□ 2.45
SIX3-201ENST00000260653 CARD14Q9BXL6 1004 aa30.34■■■□□ 2.45
SIX3-201ENST00000260653 SLC12A5Q9H2X9 1139 aa30.34■■■□□ 2.45
SIX3-201ENST00000260653 GTF3C3Q9Y5Q9 886 aa30.34■■■□□ 2.45
SIX3-201ENST00000260653 PLEKHG1Q9ULL1 1385 aa30.34■■■□□ 2.45
SIX3-201ENST00000260653 ADAMTS13Q76LX8 1427 aa30.34■■■□□ 2.45
SIX3-201ENST00000260653 PUS7Q96PZ0 661 aaKnown RBP30.33■■■□□ 2.45
SIX3-201ENST00000260653 PLEKHH1Q9ULM0 1364 aa30.31■■■□□ 2.44
SIX3-201ENST00000260653 WAPLQ7Z5K2 1190 aa30.31■■■□□ 2.44
SIX3-201ENST00000260653 EID1Q9Y6B2 187 aa30.31■■■□□ 2.44
SIX3-201ENST00000260653 THEMISQ8N1K5 641 aaPredicted RBP30.3■■■□□ 2.44
SIX3-201ENST00000260653 PNISRQ8TF01 805 aaKnown RBP30.3■■■□□ 2.44
SIX3-201ENST00000260653 CEP170BQ9Y4F5 1589 aaPredicted RBP30.3■■■□□ 2.44
SIX3-201ENST00000260653 NPC1L1Q9UHC9 1359 aa30.29■■■□□ 2.44
SIX3-201ENST00000260653 SRPK2P78362 688 aaKnown RBP30.29■■■□□ 2.44
SIX3-201ENST00000260653 KNDC1Q76NI1 1749 aa30.28■■■□□ 2.44
SIX3-201ENST00000260653 TECPR2O15040 1411 aa30.25■■■□□ 2.43
SIX3-201ENST00000260653 NSD3Q9BZ95 1437 aa30.25■■■□□ 2.43
SIX3-201ENST00000260653 MED14O60244 1454 aa30.24■■■□□ 2.43
SIX3-201ENST00000260653 CPS1P31327 1500 aa30.23■■■□□ 2.43
SIX3-201ENST00000260653 SLC26A8Q96RN1 970 aa30.23■■■□□ 2.43
SIX3-201ENST00000260653 CDK19Q9BWU1 502 aa30.22■■■□□ 2.43
SIX3-201ENST00000260653 ATAD2Q6PL18 1390 aa30.21■■■□□ 2.43
SIX3-201ENST00000260653 ANKRD36BQ8N2N9 1353 aa30.21■■■□□ 2.43
SIX3-201ENST00000260653 FAM135BQ49AJ0 1406 aa30.2■■■□□ 2.42
SIX3-201ENST00000260653 PPP2R1AP30153 589 aa30.2■■■□□ 2.42
SIX3-201ENST00000260653 NINLQ9Y2I6 1382 aa30.18■■■□□ 2.42
SIX3-201ENST00000260653 ZNF142P52746 1687 aaPredicted RBP30.18■■■□□ 2.42
SIX3-201ENST00000260653 ROBO2Q9HCK4 1378 aa30.16■■■□□ 2.42
SIX3-201ENST00000260653 SIRT1Q96EB6 747 aa30.16■■■□□ 2.42
SIX3-201ENST00000260653 SETD1BQ9UPS6 1966 aaKnown RBP30.16■■■□□ 2.42
SIX3-201ENST00000260653 USP32Q8NFA0 1604 aa30.15■■■□□ 2.42
SIX3-201ENST00000260653 PTPRUQ92729 1446 aa30.14■■■□□ 2.42
SIX3-201ENST00000260653 A0A1W2PP64 1363 aa30.14■■■□□ 2.42
SIX3-201ENST00000260653 PRKCSHP14314 528 aaPredicted RBP30.14■■■□□ 2.41
SIX3-201ENST00000260653 ZBED9Q6R2W3 1325 aa30.13■■■□□ 2.41
SIX3-201ENST00000260653 TBX22Q9Y458 520 aa30.12■■■□□ 2.41
SIX3-201ENST00000260653 DIP2AQ14689 1571 aa30.11■■■□□ 2.41
SIX3-201ENST00000260653 CD163L1Q9NR16 1453 aa30.1■■■□□ 2.41
SIX3-201ENST00000260653 CGNL1Q0VF96 1302 aa30.09■■■□□ 2.41
SIX3-201ENST00000260653 WASLO00401 505 aaPredicted RBP30.09■■■□□ 2.41
SIX3-201ENST00000260653 CABP1Q9NZU7 370 aa30.07■■■□□ 2.4
SIX3-201ENST00000260653 TERF2IPQ9NYB0 399 aa30.06■■■□□ 2.4
SIX3-201ENST00000260653 SENP3-EIF4A1A0A087X0R7 540 aa30.05■■■□□ 2.4
SIX3-201ENST00000260653 AMOTL2Q9Y2J4 779 aa30.05■■■□□ 2.4
SIX3-201ENST00000260653 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.05■■■□□ 2.4
SIX3-201ENST00000260653 MORC1Q86VD1 984 aa30.03■■■□□ 2.4
SIX3-201ENST00000260653 ANKLE2Q86XL3 938 aa30.02■■■□□ 2.4
SIX3-201ENST00000260653 ADGRB2O60241 1585 aa30■■■□□ 2.39
SIX3-201ENST00000260653 PTCH1Q13635 1447 aa30■■■□□ 2.39
SIX3-201ENST00000260653 NSD2O96028 1365 aa30■■■□□ 2.39
SIX3-201ENST00000260653 HDGFL2Q7Z4V5 671 aaPredicted RBP30■■■□□ 2.39
SIX3-201ENST00000260653 TNNT2P45379 298 aaPredicted RBP29.99■■■□□ 2.39
SIX3-201ENST00000260653 XRN1Q8IZH2 1706 aaKnown RBP29.99■■■□□ 2.39
SIX3-201ENST00000260653 ATP7BP35670 1465 aa29.99■■■□□ 2.39
SIX3-201ENST00000260653 PPIP5K1Q6PFW1 1433 aa29.98■■■□□ 2.39
SIX3-201ENST00000260653 NUDT16Q96DE0 195 aaKnown RBP29.97■■■□□ 2.39
SIX3-201ENST00000260653 NCKAP5LQ9HCH0 1330 aa29.96■■■□□ 2.39
SIX3-201ENST00000260653 BLMP54132 1417 aaPredicted RBP29.95■■■□□ 2.39
SIX3-201ENST00000260653 ADAMTS8Q9UP79 889 aa29.94■■■□□ 2.38
SIX3-201ENST00000260653 INSRP06213 1382 aa29.94■■■□□ 2.38
SIX3-201ENST00000260653 PRR36Q9H6K5 1346 aa29.94■■■□□ 2.38
SIX3-201ENST00000260653 PIK3R4Q99570 1358 aa29.93■■■□□ 2.38
SIX3-201ENST00000260653 WDR43Q15061 677 aaKnown RBP eCLIP29.93■■■□□ 2.38
SIX3-201ENST00000260653 GGNBP2Q9H3C7 697 aa29.92■■■□□ 2.38
SIX3-201ENST00000260653 CCDC61Q9Y6R9 512 aa29.92■■■□□ 2.38
SIX3-201ENST00000260653 FYB1O15117 783 aa29.91■■■□□ 2.38
SIX3-201ENST00000260653 KCNA6P17658 529 aa29.91■■■□□ 2.38
SIX3-201ENST00000260653 CPSF1Q10570 1443 aaKnown RBP29.9■■■□□ 2.38
SIX3-201ENST00000260653 ANKRD26Q9UPS8 1709 aa29.9■■■□□ 2.38
SIX3-201ENST00000260653 CDC42BPGQ6DT37 1551 aa29.89■■■□□ 2.38
SIX3-201ENST00000260653 KIF20BQ96Q89 1820 aa29.89■■■□□ 2.37
SIX3-201ENST00000260653 POLR3AO14802 1390 aaPredicted RBP29.89■■■□□ 2.37
SIX3-201ENST00000260653 NUTM2FA1L443 756 aa29.86■■■□□ 2.37
SIX3-201ENST00000260653 CHD2O14647 1828 aaKnown RBP29.86■■■□□ 2.37
SIX3-201ENST00000260653 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.86■■■□□ 2.37
SIX3-201ENST00000260653 NPHP4O75161 1426 aaPredicted RBP29.85■■■□□ 2.37
SIX3-201ENST00000260653 TOPAZ1Q8N9V7 1692 aa29.85■■■□□ 2.37
SIX3-201ENST00000260653 SALL2Q9Y467 1007 aaPredicted RBP29.85■■■□□ 2.37
SIX3-201ENST00000260653 MTHFSP49914 203 aa29.84■■■□□ 2.37
SIX3-201ENST00000260653 EDC4Q6P2E9 1401 aaKnown RBP29.83■■■□□ 2.37
SIX3-201ENST00000260653 ITSN1Q15811 1721 aa29.83■■■□□ 2.37
SIX3-201ENST00000260653 MON2Q7Z3U7 1717 aa29.83■■■□□ 2.37
SIX3-201ENST00000260653 AKAP12Q02952 1782 aa29.83■■■□□ 2.37
SIX3-201ENST00000260653 SHPRHQ149N8 1683 aa29.81■■■□□ 2.36
SIX3-201ENST00000260653 SMG6Q86US8 1419 aaKnown RBP29.79■■■□□ 2.36
SIX3-201ENST00000260653 NKTRP30414 1462 aaKnown RBP29.79■■■□□ 2.36
SIX3-201ENST00000260653 SUPT16HQ9Y5B9 1047 aaKnown RBP29.78■■■□□ 2.36
SIX3-201ENST00000260653 NUDCQ9Y266 331 aa29.75■■■□□ 2.35
SIX3-201ENST00000260653 CCDC146Q8IYE0 955 aa29.75■■■□□ 2.35
SIX3-201ENST00000260653 PLEKHG3A1L390 1219 aa29.74■■■□□ 2.35
SIX3-201ENST00000260653 NME9Q86XW9 330 aa29.74■■■□□ 2.35
SIX3-201ENST00000260653 CFAP53Q96M91 514 aa29.74■■■□□ 2.35
SIX3-201ENST00000260653 RGPD8O14715 1765 aaPredicted RBP29.74■■■□□ 2.35
SIX3-201ENST00000260653 ACEP12821 1306 aa29.74■■■□□ 2.35
SIX3-201ENST00000260653 ZNF692Q9BU19 519 aaPredicted RBP29.74■■■□□ 2.35
SIX3-201ENST00000260653 FKBP8Q14318 412 aa29.73■■■□□ 2.35
SIX3-201ENST00000260653 NALCNQ8IZF0 1738 aa29.72■■■□□ 2.35
SIX3-201ENST00000260653 NEFLP07196 543 aa29.71■■■□□ 2.35
SIX3-201ENST00000260653 RBM33Q96EV2 1170 aaKnown RBP29.71■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms