RNA–Protein interactions for RNA: ENST00000249299.6

LSM8-201, Transcript of LSM8 homolog, U6 small nuclear RNA associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM8, Length 1,305 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM8-201ENST00000249299 CCDC7Q96M83 1385 aa18.02■□□□□ 0.47
LSM8-201ENST00000249299 WASHC2AQ641Q2 1341 aa18.01■□□□□ 0.47
LSM8-201ENST00000249299 PTCH1Q13635 1447 aa18■□□□□ 0.47
LSM8-201ENST00000249299 POLR1AO95602 1720 aaPredicted RBP17.99■□□□□ 0.47
LSM8-201ENST00000249299 SAMD1Q6SPF0 538 aaPredicted RBP17.99■□□□□ 0.47
LSM8-201ENST00000249299 STK26Q9P289 416 aa17.99■□□□□ 0.47
LSM8-201ENST00000249299 NCKAP5LQ9HCH0 1330 aa17.99■□□□□ 0.47
LSM8-201ENST00000249299 CPS1P31327 1500 aa17.99■□□□□ 0.47
LSM8-201ENST00000249299 KNDC1Q76NI1 1749 aa17.99■□□□□ 0.47
LSM8-201ENST00000249299 POGKQ9P215 609 aa17.98■□□□□ 0.47
LSM8-201ENST00000249299 ATF5Q9Y2D1 282 aaPredicted RBP17.98■□□□□ 0.47
LSM8-201ENST00000249299 KIF7Q2M1P5 1343 aa17.98■□□□□ 0.47
LSM8-201ENST00000249299 C11orf95C9JLR9 678 aaPredicted RBP17.98■□□□□ 0.47
LSM8-201ENST00000249299 PRAM1Q96QH2 718 aa17.98■□□□□ 0.47
LSM8-201ENST00000249299 AMOTL2Q9Y2J4 779 aa17.98■□□□□ 0.47
LSM8-201ENST00000249299 ARHGEF28Q8N1W1 1705 aaKnown RBP17.97■□□□□ 0.47
LSM8-201ENST00000249299 SPINK5Q9NQ38 1064 aaPredicted RBP17.97■□□□□ 0.47
LSM8-201ENST00000249299 PTPRUQ92729 1446 aa17.96■□□□□ 0.47
LSM8-201ENST00000249299 KCNA6P17658 529 aa17.96■□□□□ 0.46
LSM8-201ENST00000249299 EVC2Q86UK5 1308 aa17.95■□□□□ 0.46
LSM8-201ENST00000249299 HSPA2P54652 639 aa17.95■□□□□ 0.46
LSM8-201ENST00000249299 ROBO2Q9HCK4 1378 aa17.93■□□□□ 0.46
LSM8-201ENST00000249299 DISP3Q9P2K9 1392 aa17.93■□□□□ 0.46
LSM8-201ENST00000249299 XRN1Q8IZH2 1706 aaKnown RBP17.92■□□□□ 0.46
LSM8-201ENST00000249299 DIEXFQ68CQ4 756 aaKnown RBP17.92■□□□□ 0.46
LSM8-201ENST00000249299 NINLQ9Y2I6 1382 aa17.9■□□□□ 0.46
LSM8-201ENST00000249299 QRICH2Q9H0J4 1663 aa17.89■□□□□ 0.46
LSM8-201ENST00000249299 NWD1Q149M9 1564 aa17.89■□□□□ 0.45
LSM8-201ENST00000249299 NKTRP30414 1462 aaKnown RBP17.89■□□□□ 0.45
LSM8-201ENST00000249299 NCOA3Q9Y6Q9 1424 aa17.89■□□□□ 0.45
LSM8-201ENST00000249299 DDX10Q13206 875 aaKnown RBP17.89■□□□□ 0.45
LSM8-201ENST00000249299 WAPLQ7Z5K2 1190 aa17.89■□□□□ 0.45
LSM8-201ENST00000249299 ATAD2Q6PL18 1390 aa17.88■□□□□ 0.45
LSM8-201ENST00000249299 ATXN8OSP0DMR3 200 aa17.88■□□□□ 0.45
LSM8-201ENST00000249299 CHD2O14647 1828 aaKnown RBP17.88■□□□□ 0.45
LSM8-201ENST00000249299 PLEKHH1Q9ULM0 1364 aa17.87■□□□□ 0.45
LSM8-201ENST00000249299 ADGRB2O60241 1585 aa17.86■□□□□ 0.45
LSM8-201ENST00000249299 WASLO00401 505 aaPredicted RBP17.86■□□□□ 0.45
LSM8-201ENST00000249299 STRCQ7RTU9 1775 aa17.85■□□□□ 0.45
LSM8-201ENST00000249299 MINK1Q8N4C8 1332 aaPredicted RBP17.85■□□□□ 0.45
LSM8-201ENST00000249299 TULP4Q9NRJ4 1543 aa17.84■□□□□ 0.45
LSM8-201ENST00000249299 SAFB2Q14151 953 aaKnown RBP eCLIP17.84■□□□□ 0.45
LSM8-201ENST00000249299 CDK19Q9BWU1 502 aa17.83■□□□□ 0.44
LSM8-201ENST00000249299 SRPK2P78362 688 aaKnown RBP17.81■□□□□ 0.44
LSM8-201ENST00000249299 POLR3GLQ9BT43 218 aa17.8■□□□□ 0.44
LSM8-201ENST00000249299 ADGRL3Q9HAR2 1447 aa17.79■□□□□ 0.44
LSM8-201ENST00000249299 PROSER2Q86WR7 435 aaPredicted RBP17.78■□□□□ 0.44
LSM8-201ENST00000249299 CABP2Q9NPB3 220 aa17.78■□□□□ 0.44
LSM8-201ENST00000249299 CCDC61Q9Y6R9 512 aa17.78■□□□□ 0.44
LSM8-201ENST00000249299 ANKARQ7Z5J8 1434 aa17.78■□□□□ 0.44
LSM8-201ENST00000249299 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.77■□□□□ 0.43
LSM8-201ENST00000249299 PER1O15534 1290 aaPredicted RBP17.76■□□□□ 0.43
LSM8-201ENST00000249299 CAPN15O75808 1086 aa17.76■□□□□ 0.43
LSM8-201ENST00000249299 C19orf44Q9H6X5 657 aa17.76■□□□□ 0.43
LSM8-201ENST00000249299 PANK3Q9H999 370 aa17.76■□□□□ 0.43
LSM8-201ENST00000249299 DCCP43146 1447 aa17.76■□□□□ 0.43
LSM8-201ENST00000249299 KTN1Q86UP2 1357 aaKnown RBP17.76■□□□□ 0.43
LSM8-201ENST00000249299 ANKRD36BQ8N2N9 1353 aa17.76■□□□□ 0.43
LSM8-201ENST00000249299 TERF2IPQ9NYB0 399 aa17.75■□□□□ 0.43
LSM8-201ENST00000249299 CDC42BPGQ6DT37 1551 aa17.75■□□□□ 0.43
LSM8-201ENST00000249299 NPC1L1Q9UHC9 1359 aa17.75■□□□□ 0.43
LSM8-201ENST00000249299 NUDT16Q96DE0 195 aaKnown RBP17.74■□□□□ 0.43
LSM8-201ENST00000249299 ANP32CO43423 234 aa17.73■□□□□ 0.43
LSM8-201ENST00000249299 ATP7BP35670 1465 aa17.73■□□□□ 0.43
LSM8-201ENST00000249299 PLEKHG3A1L390 1219 aa17.72■□□□□ 0.43
LSM8-201ENST00000249299 TMC1Q8TDI8 760 aa17.72■□□□□ 0.43
LSM8-201ENST00000249299 SLC12A5Q9H2X9 1139 aa17.72■□□□□ 0.43
LSM8-201ENST00000249299 TMEM94Q12767 1356 aa17.72■□□□□ 0.43
LSM8-201ENST00000249299 HDGFL2Q7Z4V5 671 aaPredicted RBP17.72■□□□□ 0.43
LSM8-201ENST00000249299 ZNF692Q9BU19 519 aaPredicted RBP17.72■□□□□ 0.43
LSM8-201ENST00000249299 KNSTRNQ9Y448 316 aa17.72■□□□□ 0.43
LSM8-201ENST00000249299 MYOM1P52179 1685 aa17.7■□□□□ 0.42
LSM8-201ENST00000249299 C14orf37Q86TY3 774 aa17.7■□□□□ 0.42
LSM8-201ENST00000249299 CABP1Q9NZU7 370 aa17.7■□□□□ 0.42
LSM8-201ENST00000249299 CADPS2Q86UW7 1296 aa17.69■□□□□ 0.42
LSM8-201ENST00000249299 ZNF335Q9H4Z2 1342 aaPredicted RBP17.69■□□□□ 0.42
LSM8-201ENST00000249299 PRR36Q9H6K5 1346 aa17.69■□□□□ 0.42
LSM8-201ENST00000249299 CPSF1Q10570 1443 aaKnown RBP17.68■□□□□ 0.42
LSM8-201ENST00000249299 PPIP5K1Q6PFW1 1433 aa17.68■□□□□ 0.42
LSM8-201ENST00000249299 RALBP1Q15311 655 aa17.68■□□□□ 0.42
LSM8-201ENST00000249299 LRRC7Q96NW7 1537 aa17.68■□□□□ 0.42
LSM8-201ENST00000249299 BRD4O60885 1362 aaPredicted RBP17.67■□□□□ 0.42
LSM8-201ENST00000249299 NSD2O96028 1365 aa17.67■□□□□ 0.42
LSM8-201ENST00000249299 MSH6P52701 1360 aa17.67■□□□□ 0.42
LSM8-201ENST00000249299 AMER1Q5JTC6 1135 aaPredicted RBP17.67■□□□□ 0.42
LSM8-201ENST00000249299 CARD14Q9BXL6 1004 aa17.67■□□□□ 0.42
LSM8-201ENST00000249299 PRKRIP1Q9H875 184 aaPredicted RBP17.67■□□□□ 0.42
LSM8-201ENST00000249299 STRCP1A6NGW2 1772 aa17.66■□□□□ 0.42
LSM8-201ENST00000249299 NALCNQ8IZF0 1738 aa17.66■□□□□ 0.42
LSM8-201ENST00000249299 CD163L1Q9NR16 1453 aa17.66■□□□□ 0.42
LSM8-201ENST00000249299 POLR3AO14802 1390 aaPredicted RBP17.66■□□□□ 0.42
LSM8-201ENST00000249299 CGNL1Q0VF96 1302 aa17.66■□□□□ 0.42
LSM8-201ENST00000249299 ATF3P18847 181 aa17.66■□□□□ 0.42
LSM8-201ENST00000249299 FMN2Q9NZ56 1722 aa17.65■□□□□ 0.42
LSM8-201ENST00000249299 A0A1W2PP64 1363 aa17.65■□□□□ 0.42
LSM8-201ENST00000249299 CCER2I3L3R5 266 aa17.64■□□□□ 0.41
LSM8-201ENST00000249299 MIER1Q8N108 512 aa17.64■□□□□ 0.41
LSM8-201ENST00000249299 EDC4Q6P2E9 1401 aaKnown RBP17.63■□□□□ 0.41
LSM8-201ENST00000249299 TOPAZ1Q8N9V7 1692 aa17.63■□□□□ 0.41
LSM8-201ENST00000249299 USP32Q8NFA0 1604 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms