RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 NOS1P29475 1434 aa17.53■□□□□ 0.4
GABPB1-201ENST00000220429 CAMSAP1Q5T5Y3 1602 aa17.53■□□□□ 0.4
GABPB1-201ENST00000220429 SIGLEC1Q9BZZ2 1709 aa17.53■□□□□ 0.4
GABPB1-201ENST00000220429 CHGAP10645 457 aaKnown RBP17.51■□□□□ 0.39
GABPB1-201ENST00000220429 KNSTRNQ9Y448 316 aa17.51■□□□□ 0.39
GABPB1-201ENST00000220429 AMER1Q5JTC6 1135 aaPredicted RBP17.5■□□□□ 0.39
GABPB1-201ENST00000220429 ERVK-7P63135 1459 aa17.5■□□□□ 0.39
GABPB1-201ENST00000220429 MYO3AQ8NEV4 1616 aa17.5■□□□□ 0.39
GABPB1-201ENST00000220429 CHMP4BQ9H444 224 aaKnown RBP17.5■□□□□ 0.39
GABPB1-201ENST00000220429 XRCC6P12956 609 aaKnown RBP eCLIP17.49■□□□□ 0.39
GABPB1-201ENST00000220429 CANXP27824 592 aaKnown RBP17.49■□□□□ 0.39
GABPB1-201ENST00000220429 ZMYM4Q5VZL5 1548 aa17.49■□□□□ 0.39
GABPB1-201ENST00000220429 SETBP1Q9Y6X0 1596 aa17.48■□□□□ 0.39
GABPB1-201ENST00000220429 BLMP54132 1417 aaPredicted RBP17.48■□□□□ 0.39
GABPB1-201ENST00000220429 ASXL1Q8IXJ9 1541 aa17.48■□□□□ 0.39
GABPB1-201ENST00000220429 INSRP06213 1382 aa17.48■□□□□ 0.39
GABPB1-201ENST00000220429 PIK3C2GO75747 1445 aa17.47■□□□□ 0.39
GABPB1-201ENST00000220429 PIK3C2BO00750 1634 aa17.47■□□□□ 0.39
GABPB1-201ENST00000220429 CYB5RLQ6IPT4 315 aa17.47■□□□□ 0.39
GABPB1-201ENST00000220429 GLI2P10070 1586 aa17.46■□□□□ 0.39
GABPB1-201ENST00000220429 YEATS2Q9ULM3 1422 aa17.46■□□□□ 0.39
GABPB1-201ENST00000220429 PPP2R1AP30153 589 aa17.46■□□□□ 0.39
GABPB1-201ENST00000220429 SMAP1Q8IYB5 467 aaPredicted RBP17.46■□□□□ 0.39
GABPB1-201ENST00000220429 EXOC6Q8TAG9 804 aa17.45■□□□□ 0.38
GABPB1-201ENST00000220429 IPO4Q8TEX9 1081 aaKnown RBP17.44■□□□□ 0.38
GABPB1-201ENST00000220429 SBNO2Q9Y2G9 1366 aa17.44■□□□□ 0.38
GABPB1-201ENST00000220429 ADGRB1O14514 1584 aa17.44■□□□□ 0.38
GABPB1-201ENST00000220429 C14orf93Q9H972 538 aaKnown RBP17.44■□□□□ 0.38
GABPB1-201ENST00000220429 ZC3H13Q5T200 1668 aaKnown RBP17.44■□□□□ 0.38
GABPB1-201ENST00000220429 NPC1L1Q9UHC9 1359 aa17.44■□□□□ 0.38
GABPB1-201ENST00000220429 GOLGA6L3A6NEY3 463 aa17.43■□□□□ 0.38
GABPB1-201ENST00000220429 ESPNB1AK53 854 aa17.43■□□□□ 0.38
GABPB1-201ENST00000220429 PAXIP1Q6ZW49 1069 aaPredicted RBP17.43■□□□□ 0.38
GABPB1-201ENST00000220429 RPGRIP1LQ68CZ1 1315 aa17.43■□□□□ 0.38
GABPB1-201ENST00000220429 PDE3BQ13370 1112 aa17.42■□□□□ 0.38
GABPB1-201ENST00000220429 ARXQ96QS3 562 aa17.42■□□□□ 0.38
GABPB1-201ENST00000220429 RIMBP3CA6NJZ7 1639 aa17.42■□□□□ 0.38
GABPB1-201ENST00000220429 RIMBP3BA6NNM3 1639 aa17.42■□□□□ 0.38
GABPB1-201ENST00000220429 RIMBP3Q9UFD9 1639 aa17.42■□□□□ 0.38
GABPB1-201ENST00000220429 KLHL34Q8N239 644 aa17.42■□□□□ 0.38
GABPB1-201ENST00000220429 ARHGAP31Q2M1Z3 1444 aa17.42■□□□□ 0.38
GABPB1-201ENST00000220429 PANK2Q9BZ23 570 aa17.41■□□□□ 0.38
GABPB1-201ENST00000220429 QRICH2Q9H0J4 1663 aa17.41■□□□□ 0.38
GABPB1-201ENST00000220429 ZHX1Q9UKY1 873 aaPredicted RBP17.41■□□□□ 0.38
GABPB1-201ENST00000220429 NCLP19338 710 aaKnown RBP17.41■□□□□ 0.38
GABPB1-201ENST00000220429 MAP7D2Q96T17 732 aa17.41■□□□□ 0.38
GABPB1-201ENST00000220429 ADAMTS8Q9UP79 889 aa17.41■□□□□ 0.38
GABPB1-201ENST00000220429 TRAK1Q9UPV9 953 aa17.4■□□□□ 0.38
GABPB1-201ENST00000220429 FSD2A1L4K1 749 aa17.4■□□□□ 0.38
GABPB1-201ENST00000220429 CDCA7LQ96GN5 454 aa17.4■□□□□ 0.38
GABPB1-201ENST00000220429 NEXMIFQ5QGS0 1516 aa17.4■□□□□ 0.38
GABPB1-201ENST00000220429 TMEM132EQ6IEE7 984 aa17.39■□□□□ 0.37
GABPB1-201ENST00000220429 MYO5BQ9ULV0 1848 aa17.38■□□□□ 0.37
GABPB1-201ENST00000220429 CARD14Q9BXL6 1004 aa17.38■□□□□ 0.37
GABPB1-201ENST00000220429 DIP2BQ9P265 1576 aa17.38■□□□□ 0.37
GABPB1-201ENST00000220429 RRP1P56182 461 aaKnown RBP17.37■□□□□ 0.37
GABPB1-201ENST00000220429 TSPOAP1O95153 1857 aa17.37■□□□□ 0.37
GABPB1-201ENST00000220429 KIAA1211Q6ZU35 1233 aa17.37■□□□□ 0.37
GABPB1-201ENST00000220429 ERBB4Q15303 1308 aa17.37■□□□□ 0.37
GABPB1-201ENST00000220429 NUTM2DQ5VT03 806 aaPredicted RBP17.36■□□□□ 0.37
GABPB1-201ENST00000220429 RCAN3Q9UKA8 241 aa17.36■□□□□ 0.37
GABPB1-201ENST00000220429 PREX1Q8TCU6 1659 aa17.36■□□□□ 0.37
GABPB1-201ENST00000220429 FAM69CQ0P6D2 419 aa17.35■□□□□ 0.37
GABPB1-201ENST00000220429 IDI1Q13907 227 aa17.35■□□□□ 0.37
GABPB1-201ENST00000220429 ARHGEF28Q8N1W1 1705 aaKnown RBP17.35■□□□□ 0.37
GABPB1-201ENST00000220429 WDR43Q15061 677 aaKnown RBP eCLIP17.34■□□□□ 0.37
GABPB1-201ENST00000220429 VGFO15240 615 aaPredicted RBP17.34■□□□□ 0.37
GABPB1-201ENST00000220429 UTP14CQ5TAP6 766 aaKnown RBP17.33■□□□□ 0.36
GABPB1-201ENST00000220429 SKAP1Q86WV1 359 aa17.33■□□□□ 0.36
GABPB1-201ENST00000220429 SLC52A1Q9NWF4 448 aa17.32■□□□□ 0.36
GABPB1-201ENST00000220429 TMEM131LA2VDJ0 1609 aa17.31■□□□□ 0.36
GABPB1-201ENST00000220429 MYH16Q9H6N6 1097 aa17.31■□□□□ 0.36
GABPB1-201ENST00000220429 PLEKHH1Q9ULM0 1364 aa17.31■□□□□ 0.36
GABPB1-201ENST00000220429 RIPK4P57078 832 aa17.3■□□□□ 0.36
GABPB1-201ENST00000220429 MRE11P49959 708 aa17.3■□□□□ 0.36
GABPB1-201ENST00000220429 ZFYVE9O95405 1425 aa17.29■□□□□ 0.36
GABPB1-201ENST00000220429 DMTNQ08495 405 aa17.29■□□□□ 0.36
GABPB1-201ENST00000220429 FAM161AQ3B820 660 aa17.29■□□□□ 0.36
GABPB1-201ENST00000220429 SLC12A5Q9H2X9 1139 aa17.29■□□□□ 0.36
GABPB1-201ENST00000220429 NSD3Q9BZ95 1437 aa17.29■□□□□ 0.36
GABPB1-201ENST00000220429 FAM13BQ9NYF5 915 aa17.28■□□□□ 0.36
GABPB1-201ENST00000220429 TRIM44Q96DX7 344 aaPredicted RBP17.28■□□□□ 0.36
GABPB1-201ENST00000220429 TULP4Q9NRJ4 1543 aa17.28■□□□□ 0.36
GABPB1-201ENST00000220429 ZNF521Q96K83 1311 aa17.27■□□□□ 0.36
GABPB1-201ENST00000220429 PRDM10Q9NQV6 1147 aa17.27■□□□□ 0.35
GABPB1-201ENST00000220429 TMEM51Q9NW97 253 aa17.27■□□□□ 0.35
GABPB1-201ENST00000220429 TERF1P54274 439 aa17.26■□□□□ 0.35
GABPB1-201ENST00000220429 FBXO31Q5XUX0 539 aaPredicted RBP17.26■□□□□ 0.35
GABPB1-201ENST00000220429 REREQ9P2R6 1566 aa17.26■□□□□ 0.35
GABPB1-201ENST00000220429 C8orf34Q49A92 452 aa17.26■□□□□ 0.35
GABPB1-201ENST00000220429 USP32Q8NFA0 1604 aa17.25■□□□□ 0.35
GABPB1-201ENST00000220429 PPP4R3BQ5MIZ7 849 aa17.25■□□□□ 0.35
GABPB1-201ENST00000220429 CCDC146Q8IYE0 955 aa17.25■□□□□ 0.35
GABPB1-201ENST00000220429 SENP3Q9H4L4 574 aaPredicted RBP17.24■□□□□ 0.35
GABPB1-201ENST00000220429 EVC2Q86UK5 1308 aa17.23■□□□□ 0.35
GABPB1-201ENST00000220429 MTERF4Q7Z6M4 381 aaKnown RBP17.23■□□□□ 0.35
GABPB1-201ENST00000220429 GZF1Q9H116 711 aaPredicted RBP17.23■□□□□ 0.35
GABPB1-201ENST00000220429 AGLP35573 1532 aa17.23■□□□□ 0.35
GABPB1-201ENST00000220429 POLR3AO14802 1390 aaPredicted RBP17.23■□□□□ 0.35
GABPB1-201ENST00000220429 DUSP27Q5VZP5 1158 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms