RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 SIRT1Q96EB6 747 aa19.24■□□□□ 0.67
RTFDC1-201ENST00000023939 ATAD2Q6PL18 1390 aa19.24■□□□□ 0.67
RTFDC1-201ENST00000023939 POGKQ9P215 609 aa19.23■□□□□ 0.67
RTFDC1-201ENST00000023939 TECPR2O15040 1411 aa19.23■□□□□ 0.67
RTFDC1-201ENST00000023939 SMG6Q86US8 1419 aaKnown RBP19.23■□□□□ 0.67
RTFDC1-201ENST00000023939 NSD3Q9BZ95 1437 aa19.23■□□□□ 0.67
RTFDC1-201ENST00000023939 KNDC1Q76NI1 1749 aa19.21■□□□□ 0.67
RTFDC1-201ENST00000023939 NEFLP07196 543 aa19.21■□□□□ 0.67
RTFDC1-201ENST00000023939 SLIT1O75093 1534 aa19.21■□□□□ 0.67
RTFDC1-201ENST00000023939 FAM135BQ49AJ0 1406 aa19.2■□□□□ 0.66
RTFDC1-201ENST00000023939 NSD2O96028 1365 aa19.2■□□□□ 0.66
RTFDC1-201ENST00000023939 PLEKHG1Q9ULL1 1385 aa19.2■□□□□ 0.66
RTFDC1-201ENST00000023939 ARHGAP23Q9P227 1491 aa19.2■□□□□ 0.66
RTFDC1-201ENST00000023939 METP08581 1390 aa19.2■□□□□ 0.66
RTFDC1-201ENST00000023939 CABP2Q9NPB3 220 aa19.2■□□□□ 0.66
RTFDC1-201ENST00000023939 CEBPAP49715 358 aaPredicted RBP19.18■□□□□ 0.66
RTFDC1-201ENST00000023939 SAFB2Q14151 953 aaKnown RBP eCLIP19.18■□□□□ 0.66
RTFDC1-201ENST00000023939 ADAMTS13Q76LX8 1427 aa19.18■□□□□ 0.66
RTFDC1-201ENST00000023939 CPS1P31327 1500 aa19.18■□□□□ 0.66
RTFDC1-201ENST00000023939 CGNL1Q0VF96 1302 aa19.18■□□□□ 0.66
RTFDC1-201ENST00000023939 MINK1Q8N4C8 1332 aaPredicted RBP19.18■□□□□ 0.66
RTFDC1-201ENST00000023939 SRPK2P78362 688 aaKnown RBP19.17■□□□□ 0.66
RTFDC1-201ENST00000023939 FKBP8Q14318 412 aa19.17■□□□□ 0.66
RTFDC1-201ENST00000023939 MED14O60244 1454 aa19.16■□□□□ 0.66
RTFDC1-201ENST00000023939 SENP3Q9H4L4 574 aaPredicted RBP19.16■□□□□ 0.66
RTFDC1-201ENST00000023939 NUDCQ9Y266 331 aa19.16■□□□□ 0.66
RTFDC1-201ENST00000023939 PDE3BQ13370 1112 aa19.15■□□□□ 0.66
RTFDC1-201ENST00000023939 POLR3AO14802 1390 aaPredicted RBP19.15■□□□□ 0.66
RTFDC1-201ENST00000023939 CDK19Q9BWU1 502 aa19.14■□□□□ 0.66
RTFDC1-201ENST00000023939 PLEKHH1Q9ULM0 1364 aa19.14■□□□□ 0.65
RTFDC1-201ENST00000023939 CD163L1Q9NR16 1453 aa19.13■□□□□ 0.65
RTFDC1-201ENST00000023939 A0A1W2PP64 1363 aa19.13■□□□□ 0.65
RTFDC1-201ENST00000023939 LTKP29376 864 aa19.13■□□□□ 0.65
RTFDC1-201ENST00000023939 TERF2IPQ9NYB0 399 aa19.13■□□□□ 0.65
RTFDC1-201ENST00000023939 ERICH6BQ5W0A0 696 aa19.12■□□□□ 0.65
RTFDC1-201ENST00000023939 MORC1Q86VD1 984 aa19.12■□□□□ 0.65
RTFDC1-201ENST00000023939 ADAMTS8Q9UP79 889 aa19.12■□□□□ 0.65
RTFDC1-201ENST00000023939 WDR43Q15061 677 aaKnown RBP eCLIP19.11■□□□□ 0.65
RTFDC1-201ENST00000023939 WAPLQ7Z5K2 1190 aa19.11■□□□□ 0.65
RTFDC1-201ENST00000023939 TXNDC2Q86VQ3 553 aa19.11■□□□□ 0.65
RTFDC1-201ENST00000023939 THEMISQ8N1K5 641 aaPredicted RBP19.11■□□□□ 0.65
RTFDC1-201ENST00000023939 EID1Q9Y6B2 187 aa19.11■□□□□ 0.65
RTFDC1-201ENST00000023939 ATP7BP35670 1465 aa19.1■□□□□ 0.65
RTFDC1-201ENST00000023939 DIP2AQ14689 1571 aa19.08■□□□□ 0.65
RTFDC1-201ENST00000023939 ADAMTSL3P82987 1691 aa19.08■□□□□ 0.64
RTFDC1-201ENST00000023939 WASLO00401 505 aaPredicted RBP19.08■□□□□ 0.64
RTFDC1-201ENST00000023939 TBX22Q9Y458 520 aa19.08■□□□□ 0.64
RTFDC1-201ENST00000023939 RNF123Q5XPI4 1314 aa19.08■□□□□ 0.64
RTFDC1-201ENST00000023939 HDGFL2Q7Z4V5 671 aaPredicted RBP19.07■□□□□ 0.64
RTFDC1-201ENST00000023939 ADGRB2O60241 1585 aa19.06■□□□□ 0.64
RTFDC1-201ENST00000023939 BCANQ96GW7 911 aa19.06■□□□□ 0.64
RTFDC1-201ENST00000023939 CEP170BQ9Y4F5 1589 aaPredicted RBP19.05■□□□□ 0.64
RTFDC1-201ENST00000023939 RIMS1Q86UR5 1692 aaKnown RBP19.05■□□□□ 0.64
RTFDC1-201ENST00000023939 ROBO2Q9HCK4 1378 aa19.05■□□□□ 0.64
RTFDC1-201ENST00000023939 ANKRD26Q9UPS8 1709 aa19.04■□□□□ 0.64
RTFDC1-201ENST00000023939 CABP1Q9NZU7 370 aa19.04■□□□□ 0.64
RTFDC1-201ENST00000023939 NGEFQ8N5V2 710 aa19.03■□□□□ 0.64
RTFDC1-201ENST00000023939 CPSF1Q10570 1443 aaKnown RBP19.03■□□□□ 0.64
RTFDC1-201ENST00000023939 PTPRUQ92729 1446 aa19.02■□□□□ 0.64
RTFDC1-201ENST00000023939 PTCH1Q13635 1447 aa19.01■□□□□ 0.63
RTFDC1-201ENST00000023939 ZNF142P52746 1687 aaPredicted RBP19.01■□□□□ 0.63
RTFDC1-201ENST00000023939 SHPRHQ149N8 1683 aa19.01■□□□□ 0.63
RTFDC1-201ENST00000023939 FYB1O15117 783 aa19.01■□□□□ 0.63
RTFDC1-201ENST00000023939 ZNF521Q96K83 1311 aa19■□□□□ 0.63
RTFDC1-201ENST00000023939 PIK3R4Q99570 1358 aa19■□□□□ 0.63
RTFDC1-201ENST00000023939 CFAP53Q96M91 514 aa19■□□□□ 0.63
RTFDC1-201ENST00000023939 MTHFSP49914 203 aa18.99■□□□□ 0.63
RTFDC1-201ENST00000023939 CCDC61Q9Y6R9 512 aa18.99■□□□□ 0.63
RTFDC1-201ENST00000023939 PPIP5K1Q6PFW1 1433 aa18.99■□□□□ 0.63
RTFDC1-201ENST00000023939 CDC42BPGQ6DT37 1551 aa18.99■□□□□ 0.63
RTFDC1-201ENST00000023939 PELP1Q8IZL8 1130 aaKnown RBP18.98■□□□□ 0.63
RTFDC1-201ENST00000023939 NUDT16Q96DE0 195 aaKnown RBP18.98■□□□□ 0.63
RTFDC1-201ENST00000023939 EDC4Q6P2E9 1401 aaKnown RBP18.98■□□□□ 0.63
RTFDC1-201ENST00000023939 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.98■□□□□ 0.63
RTFDC1-201ENST00000023939 KIF20BQ96Q89 1820 aa18.98■□□□□ 0.63
RTFDC1-201ENST00000023939 SENP3-EIF4A1A0A087X0R7 540 aa18.97■□□□□ 0.63
RTFDC1-201ENST00000023939 SLC26A8Q96RN1 970 aa18.97■□□□□ 0.63
RTFDC1-201ENST00000023939 TNNT2P45379 298 aaPredicted RBP18.96■□□□□ 0.63
RTFDC1-201ENST00000023939 PLPPR3Q6T4P5 718 aa18.96■□□□□ 0.63
RTFDC1-201ENST00000023939 GGNBP2Q9H3C7 697 aa18.96■□□□□ 0.63
RTFDC1-201ENST00000023939 XRN1Q8IZH2 1706 aaKnown RBP18.96■□□□□ 0.63
RTFDC1-201ENST00000023939 AMOTL2Q9Y2J4 779 aa18.95■□□□□ 0.62
RTFDC1-201ENST00000023939 SALL2Q9Y467 1007 aaPredicted RBP18.95■□□□□ 0.62
RTFDC1-201ENST00000023939 MON2Q7Z3U7 1717 aa18.94■□□□□ 0.62
RTFDC1-201ENST00000023939 NCBP3Q53F19 620 aaKnown RBP18.94■□□□□ 0.62
RTFDC1-201ENST00000023939 CDCA7LQ96GN5 454 aa18.94■□□□□ 0.62
RTFDC1-201ENST00000023939 SETD1BQ9UPS6 1966 aaKnown RBP18.93■□□□□ 0.62
RTFDC1-201ENST00000023939 PRR36Q9H6K5 1346 aa18.93■□□□□ 0.62
RTFDC1-201ENST00000023939 TOPAZ1Q8N9V7 1692 aa18.93■□□□□ 0.62
RTFDC1-201ENST00000023939 ZNF692Q9BU19 519 aaPredicted RBP18.93■□□□□ 0.62
RTFDC1-201ENST00000023939 COL3A1P02461 1466 aaPredicted RBP18.92■□□□□ 0.62
RTFDC1-201ENST00000023939 AKAP12Q02952 1782 aa18.92■□□□□ 0.62
RTFDC1-201ENST00000023939 PNPLA6Q8IY17 1366 aa18.92■□□□□ 0.62
RTFDC1-201ENST00000023939 PPP4R2Q9NY27 417 aa18.91■□□□□ 0.62
RTFDC1-201ENST00000023939 RCAN3Q9UKA8 241 aa18.91■□□□□ 0.62
RTFDC1-201ENST00000023939 PLEKHG3A1L390 1219 aa18.91■□□□□ 0.62
RTFDC1-201ENST00000023939 APAF1O14727 1248 aa18.91■□□□□ 0.62
RTFDC1-201ENST00000023939 IRX6P78412 446 aaPredicted RBP18.91■□□□□ 0.62
RTFDC1-201ENST00000023939 GOLGA2Q08379 1002 aa18.91■□□□□ 0.62
RTFDC1-201ENST00000023939 ANKLE2Q86XL3 938 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms