RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Ppm1eQ80TL0 749 aa14.27□□□□□ -0.12
Trim56-201ENSMUST00000054384 Chrna2Q91X60 512 aa14.27□□□□□ -0.13
Trim56-201ENSMUST00000054384 Plekhh1Q80TI1 1356 aa14.27□□□□□ -0.13
Trim56-201ENSMUST00000054384 Usp40Q8BWR4 1235 aa14.27□□□□□ -0.13
Trim56-201ENSMUST00000054384 Cyp46a1Q9WVK8 500 aa14.27□□□□□ -0.13
Trim56-201ENSMUST00000054384 Dhx8A2A4P0 1244 aaKnown RBP14.26□□□□□ -0.13
Trim56-201ENSMUST00000054384 Rnf214Q8BFU3 668 aaKnown RBP14.26□□□□□ -0.13
Trim56-201ENSMUST00000054384 AnlnQ8K298 1121 aaKnown RBP14.26□□□□□ -0.13
Trim56-201ENSMUST00000054384 Tmco3Q8BH01 678 aa14.26□□□□□ -0.13
Trim56-201ENSMUST00000054384 BcanQ61361 883 aa14.25□□□□□ -0.13
Trim56-201ENSMUST00000054384 Ccdc96Q9CR92 584 aa14.25□□□□□ -0.13
Trim56-201ENSMUST00000054384 Gnai1B2RSH2 354 aa14.25□□□□□ -0.13
Trim56-201ENSMUST00000054384 Gnai3Q9DC51 354 aa14.25□□□□□ -0.13
Trim56-201ENSMUST00000054384 Nol12Q8BG17 217 aa14.25□□□□□ -0.13
Trim56-201ENSMUST00000054384 Luc7lQ9CYI4 371 aaKnown RBP14.25□□□□□ -0.13
Trim56-201ENSMUST00000054384 KarsQ99MN1 595 aaKnown RBP14.24□□□□□ -0.13
Trim56-201ENSMUST00000054384 Mink1Q9JM52 1308 aa14.24□□□□□ -0.13
Trim56-201ENSMUST00000054384 Ccar2Q8VDP4 922 aaKnown RBP14.24□□□□□ -0.13
Trim56-201ENSMUST00000054384 Nop14Q8R3N1 860 aaKnown RBP14.24□□□□□ -0.13
Trim56-201ENSMUST00000054384 WrnO09053 1401 aa14.24□□□□□ -0.13
Trim56-201ENSMUST00000054384 Rrp9Q91WM3 475 aaKnown RBP14.24□□□□□ -0.13
Trim56-201ENSMUST00000054384 Sv2bQ8BG39 683 aa14.23□□□□□ -0.13
Trim56-201ENSMUST00000054384 Mrvi1Q9WUX5 899 aaKnown RBP14.23□□□□□ -0.13
Trim56-201ENSMUST00000054384 Eva1cP58659 440 aa14.23□□□□□ -0.13
Trim56-201ENSMUST00000054384 ScribQ80U72 1612 aa14.23□□□□□ -0.13
Trim56-201ENSMUST00000054384 Ncoa2Q61026 1462 aa14.23□□□□□ -0.13
Trim56-201ENSMUST00000054384 Trim55G3X8Y1 545 aa14.23□□□□□ -0.13
Trim56-201ENSMUST00000054384 NefhP19246 1090 aa14.23□□□□□ -0.13
Trim56-201ENSMUST00000054384 Gbp4Q61107 620 aa14.23□□□□□ -0.13
Trim56-201ENSMUST00000054384 Pip4k2aO70172 405 aa14.22□□□□□ -0.13
Trim56-201ENSMUST00000054384 Bag1Q60739 355 aa14.22□□□□□ -0.13
Trim56-201ENSMUST00000054384 Shq1Q7TMX5 569 aa14.22□□□□□ -0.13
Trim56-201ENSMUST00000054384 Stk3Q9JI10 497 aa14.22□□□□□ -0.13
Trim56-201ENSMUST00000054384 Ccdc183A2AJB1 534 aa14.22□□□□□ -0.13
Trim56-201ENSMUST00000054384 Fyb1O35601 819 aa14.21□□□□□ -0.13
Trim56-201ENSMUST00000054384 Lrrc45Q8CIM1 670 aa14.21□□□□□ -0.13
Trim56-201ENSMUST00000054384 Erc1Q99MI1 1120 aa14.21□□□□□ -0.13
Trim56-201ENSMUST00000054384 Nek4Q9Z1J2 792 aa14.21□□□□□ -0.13
Trim56-201ENSMUST00000054384 Esx1O88933 382 aa14.21□□□□□ -0.13
Trim56-201ENSMUST00000054384 Ccdc30Q8BVF4 654 aa14.21□□□□□ -0.13
Trim56-201ENSMUST00000054384 Rbm28Q8CGC6 750 aaKnown RBP14.21□□□□□ -0.13
Trim56-201ENSMUST00000054384 BbxQ8VBW5 907 aa14.21□□□□□ -0.13
Trim56-201ENSMUST00000054384 Zscan10Q3URR7 782 aa14.21□□□□□ -0.14
Trim56-201ENSMUST00000054384 Stim1P70302 685 aa14.21□□□□□ -0.14
Trim56-201ENSMUST00000054384 Rapgef2Q8CHG7 1496 aa14.21□□□□□ -0.14
Trim56-201ENSMUST00000054384 Gnl3lQ6PGG6 577 aaKnown RBP14.2□□□□□ -0.14
Trim56-201ENSMUST00000054384 Pank1Q8K4K6 548 aa14.2□□□□□ -0.14
Trim56-201ENSMUST00000054384 Phldb2Q8K1N2 1249 aa14.2□□□□□ -0.14
Trim56-201ENSMUST00000054384 Fmnl2A2APV2 1086 aa14.2□□□□□ -0.14
Trim56-201ENSMUST00000054384 Mcm2P97310 904 aa14.2□□□□□ -0.14
Trim56-201ENSMUST00000054384 SkilQ60665 675 aa14.2□□□□□ -0.14
Trim56-201ENSMUST00000054384 ErbinQ80TH2 1402 aa14.2□□□□□ -0.14
Trim56-201ENSMUST00000054384 Sart1Q9Z315 806 aaKnown RBP14.2□□□□□ -0.14
Trim56-201ENSMUST00000054384 Cfdp1O88271 295 aaKnown RBP14.2□□□□□ -0.14
Trim56-201ENSMUST00000054384 1700010I14RikQ7TPG0 532 aa14.2□□□□□ -0.14
Trim56-201ENSMUST00000054384 Ttll5Q8CHB8 1328 aa14.19□□□□□ -0.14
Trim56-201ENSMUST00000054384 Rbm25B2RY56 838 aaKnown RBP14.19□□□□□ -0.14
Trim56-201ENSMUST00000054384 Abl1P00520 1123 aa14.19□□□□□ -0.14
Trim56-201ENSMUST00000054384 Mphosph10Q810V0 681 aaKnown RBP14.19□□□□□ -0.14
Trim56-201ENSMUST00000054384 Odf2lQ9D478 642 aa14.19□□□□□ -0.14
Trim56-201ENSMUST00000054384 Gsto1O09131 240 aa14.19□□□□□ -0.14
Trim56-201ENSMUST00000054384 Ccdc171E9Q1U1 1324 aa14.19□□□□□ -0.14
Trim56-201ENSMUST00000054384 Prkrip1Q9CWV6 186 aaKnown RBP14.19□□□□□ -0.14
Trim56-201ENSMUST00000054384 Carmil1Q6EDY6 1374 aa14.18□□□□□ -0.14
Trim56-201ENSMUST00000054384 OptnQ8K3K8 584 aa14.18□□□□□ -0.14
Trim56-201ENSMUST00000054384 Ankrd36D3Z4K0 1415 aa14.18□□□□□ -0.14
Trim56-201ENSMUST00000054384 Agtpbp1Q641K1 1218 aa14.18□□□□□ -0.14
Trim56-201ENSMUST00000054384 Sel1lQ9Z2G6 790 aa14.18□□□□□ -0.14
Trim56-201ENSMUST00000054384 Eif3aP23116 1344 aaKnown RBP14.18□□□□□ -0.14
Trim56-201ENSMUST00000054384 AcrbpQ3V140 540 aa14.18□□□□□ -0.14
Trim56-201ENSMUST00000054384 Stk38Q91VJ4 465 aa14.17□□□□□ -0.14
Trim56-201ENSMUST00000054384 Rbm10Q99KG3 930 aaKnown RBP14.17□□□□□ -0.14
Trim56-201ENSMUST00000054384 Swt1Q9DBQ9 907 aa14.17□□□□□ -0.14
Trim56-201ENSMUST00000054384 Plcd4Q8K3R3 807 aa14.17□□□□□ -0.14
Trim56-201ENSMUST00000054384 Abcd1P48410 736 aa14.17□□□□□ -0.14
Trim56-201ENSMUST00000054384 Slc13a4Q8BZ82 625 aa14.17□□□□□ -0.14
Trim56-201ENSMUST00000054384 TnmdQ9EP64 317 aa14.17□□□□□ -0.14
Trim56-201ENSMUST00000054384 Nat10Q8K224 1024 aaKnown RBP14.17□□□□□ -0.14
Trim56-201ENSMUST00000054384 Rad54l2Q99NG0 1466 aa14.17□□□□□ -0.14
Trim56-201ENSMUST00000054384 Ppp2r3aB2RXC8 1150 aa14.16□□□□□ -0.14
Trim56-201ENSMUST00000054384 ItpripQ3TNL8 555 aa14.16□□□□□ -0.14
Trim56-201ENSMUST00000054384 Nectin2P32507 530 aa14.16□□□□□ -0.14
Trim56-201ENSMUST00000054384 Ehmt1Q5DW34 1296 aa14.16□□□□□ -0.14
Trim56-201ENSMUST00000054384 CenphQ9QYM8 241 aa14.16□□□□□ -0.14
Trim56-201ENSMUST00000054384 Dhx29Q6PGC1 1365 aaKnown RBP14.16□□□□□ -0.14
Trim56-201ENSMUST00000054384 Kcnj4P52189 445 aa14.16□□□□□ -0.14
Trim56-201ENSMUST00000054384 Ccdc181Q80ZU5 509 aa14.16□□□□□ -0.14
Trim56-201ENSMUST00000054384 Zkscan2G3X952 960 aa14.16□□□□□ -0.14
Trim56-201ENSMUST00000054384 Nutm1Q8BHP2 1126 aa14.16□□□□□ -0.14
Trim56-201ENSMUST00000054384 TxlnbQ8VBT1 685 aa14.15□□□□□ -0.14
Trim56-201ENSMUST00000054384 Trim30cD3YVI9 513 aa14.15□□□□□ -0.14
Trim56-201ENSMUST00000054384 Prl7d1P04769 244 aa14.15□□□□□ -0.14
Trim56-201ENSMUST00000054384 Map9Q3TRR0 646 aa14.15□□□□□ -0.14
Trim56-201ENSMUST00000054384 Synj1Q8CHC4 1574 aa14.15□□□□□ -0.14
Trim56-201ENSMUST00000054384 IkQ9Z1M8 557 aaKnown RBP14.15□□□□□ -0.14
Trim56-201ENSMUST00000054384 Erich4Q3UNU4 136 aa14.14□□□□□ -0.15
Trim56-201ENSMUST00000054384 PnisrA2AJT4 805 aaKnown RBP14.14□□□□□ -0.15
Trim56-201ENSMUST00000054384 Prpf4bQ61136 1007 aaKnown RBP14.14□□□□□ -0.15
Trim56-201ENSMUST00000054384 TbcaP48428 108 aaKnown RBP14.14□□□□□ -0.15
Trim56-201ENSMUST00000054384 Zkscan1Q8BGS3 561 aaKnown RBP14.14□□□□□ -0.15
Retrieved 100 of 22,080 RNA–protein pairs in 20.9 ms