Protein–RNA interactions for Protein: Q8CGC6

Rbm28, RNA-binding protein 28, mousemouse

Known RBP Predictions only

Length 750 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rbm28Q8CGC6 Gm25239-201ENSMUST00000174915 86 ntBASIC45.15■■■■■ 4.82
Rbm28Q8CGC6 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC41.75■■■■■ 4.27
Rbm28Q8CGC6 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC41.18■■■■■ 4.18
Rbm28Q8CGC6 Gm15042-201ENSMUST00000120212 883 ntBASIC39.45■■■■□ 3.91
Rbm28Q8CGC6 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC39.33■■■■□ 3.89
Rbm28Q8CGC6 Gm24109-201ENSMUST00000175489 103 ntBASIC39.13■■■■□ 3.85
Rbm28Q8CGC6 Gm15045-201ENSMUST00000117359 883 ntBASIC38.57■■■■□ 3.76
Rbm28Q8CGC6 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC38.39■■■■□ 3.74
Rbm28Q8CGC6 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC38.27■■■■□ 3.72
Rbm28Q8CGC6 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC38.12■■■■□ 3.69
Rbm28Q8CGC6 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC38.02■■■■□ 3.68
Rbm28Q8CGC6 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC37.92■■■■□ 3.66
Rbm28Q8CGC6 Gm23366-201ENSMUST00000175022 89 ntBASIC37.72■■■■□ 3.63
Rbm28Q8CGC6 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC37.52■■■■□ 3.6
Rbm28Q8CGC6 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
Rbm28Q8CGC6 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC36.79■■■■□ 3.48
Rbm28Q8CGC6 AC153911.1-202ENSMUST00000218534 1034 ntBASIC36.48■■■■□ 3.43
Rbm28Q8CGC6 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36.42■■■■□ 3.42
Rbm28Q8CGC6 Psd-208ENSMUST00000224556 2034 ntBASIC36.41■■■■□ 3.42
Rbm28Q8CGC6 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC36.37■■■■□ 3.41
Rbm28Q8CGC6 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC36.34■■■■□ 3.41
Rbm28Q8CGC6 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC36.25■■■■□ 3.39
Rbm28Q8CGC6 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC36.15■■■■□ 3.38
Rbm28Q8CGC6 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC36.11■■■■□ 3.37
Rbm28Q8CGC6 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC36.03■■■■□ 3.36
Rbm28Q8CGC6 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
Rbm28Q8CGC6 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
Rbm28Q8CGC6 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35.91■■■■□ 3.34
Rbm28Q8CGC6 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35.84■■■■□ 3.33
Rbm28Q8CGC6 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC35.84■■■■□ 3.33
Rbm28Q8CGC6 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
Rbm28Q8CGC6 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
Rbm28Q8CGC6 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35.65■■■■□ 3.3
Rbm28Q8CGC6 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC35.63■■■■□ 3.29
Rbm28Q8CGC6 Gm25238-201ENSMUST00000174914 89 ntBASIC35.63■■■■□ 3.29
Rbm28Q8CGC6 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
Rbm28Q8CGC6 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC35.43■■■■□ 3.26
Rbm28Q8CGC6 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
Rbm28Q8CGC6 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.22
Rbm28Q8CGC6 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC34.98■■■■□ 3.19
Rbm28Q8CGC6 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC34.97■■■■□ 3.19
Rbm28Q8CGC6 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
Rbm28Q8CGC6 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
Rbm28Q8CGC6 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC34.77■■■■□ 3.16
Rbm28Q8CGC6 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC34.73■■■■□ 3.15
Rbm28Q8CGC6 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
Rbm28Q8CGC6 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC34.56■■■■□ 3.12
Rbm28Q8CGC6 Gm27325-201ENSMUST00000175467 74 ntBASIC34.56■■■■□ 3.12
Rbm28Q8CGC6 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC34.53■■■■□ 3.12
Rbm28Q8CGC6 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
Rbm28Q8CGC6 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
Rbm28Q8CGC6 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
Rbm28Q8CGC6 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
Rbm28Q8CGC6 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC34.35■■■■□ 3.09
Rbm28Q8CGC6 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC34.34■■■■□ 3.09
Rbm28Q8CGC6 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
Rbm28Q8CGC6 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC34.26■■■■□ 3.07
Rbm28Q8CGC6 Gm25262-201ENSMUST00000174934 133 ntBASIC34.15■■■■□ 3.06
Rbm28Q8CGC6 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
Rbm28Q8CGC6 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC34.04■■■■□ 3.04
Rbm28Q8CGC6 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC34.04■■■■□ 3.04
Rbm28Q8CGC6 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
Rbm28Q8CGC6 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
Rbm28Q8CGC6 Rab21-202ENSMUST00000218831 843 ntBASIC33.96■■■■□ 3.03
Rbm28Q8CGC6 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC33.85■■■■□ 3.01
Rbm28Q8CGC6 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC33.82■■■■□ 3
Rbm28Q8CGC6 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33.78■■■■□ 3
Rbm28Q8CGC6 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
Rbm28Q8CGC6 Gm10524-201ENSMUST00000181931 1893 ntBASIC33.71■■■□□ 2.99
Rbm28Q8CGC6 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
Rbm28Q8CGC6 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33.69■■■□□ 2.98
Rbm28Q8CGC6 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC33.67■■■□□ 2.98
Rbm28Q8CGC6 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC33.64■■■□□ 2.98
Rbm28Q8CGC6 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
Rbm28Q8CGC6 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33.54■■■□□ 2.96
Rbm28Q8CGC6 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33.53■■■□□ 2.96
Rbm28Q8CGC6 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC33.5■■■□□ 2.95
Rbm28Q8CGC6 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
Rbm28Q8CGC6 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC33.48■■■□□ 2.95
Rbm28Q8CGC6 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC33.48■■■□□ 2.95
Rbm28Q8CGC6 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33.47■■■□□ 2.95
Rbm28Q8CGC6 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC33.46■■■□□ 2.95
Rbm28Q8CGC6 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Rbm28Q8CGC6 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Rbm28Q8CGC6 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
Rbm28Q8CGC6 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Rbm28Q8CGC6 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33.35■■■□□ 2.93
Rbm28Q8CGC6 Gm26115-201ENSMUST00000175605 87 ntBASIC33.31■■■□□ 2.92
Rbm28Q8CGC6 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC33.28■■■□□ 2.92
Rbm28Q8CGC6 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Rbm28Q8CGC6 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Rbm28Q8CGC6 CT025624.2-201ENSMUST00000223609 1909 ntBASIC33.18■■■□□ 2.9
Rbm28Q8CGC6 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
Rbm28Q8CGC6 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC33.13■■■□□ 2.89
Rbm28Q8CGC6 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC33.13■■■□□ 2.89
Rbm28Q8CGC6 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
Rbm28Q8CGC6 Gm8109-201ENSMUST00000194076 746 ntBASIC33.11■■■□□ 2.89
Rbm28Q8CGC6 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC33.09■■■□□ 2.89
Rbm28Q8CGC6 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC33.08■■■□□ 2.89
Rbm28Q8CGC6 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC33.02■■■□□ 2.88
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms