RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C MOT1P32333 1867 aa0.71□□□□□ -2.3
UBP11YKR098C KOG1P38873 1557 aa0.71□□□□□ -2.3
UBP11YKR098C NUP188P52593 1655 aaKnown RBP0.71□□□□□ -2.3
UBP11YKR098C YBR032WP38223 100 aa0.71□□□□□ -2.3
UBP11YKR098C YDR210WQ03482 75 aa0.71□□□□□ -2.3
UBP11YKR098C PMD1P32634 1753 aa0.71□□□□□ -2.3
UBP11YKR098C STT4P37297 1900 aa0.71□□□□□ -2.3
UBP11YKR098C YOR093CQ12275 1648 aa0.7□□□□□ -2.3
UBP11YKR098C YOR343CQ12484 108 aa0.7□□□□□ -2.3
UBP11YKR098C COX19Q3E731 98 aa0.7□□□□□ -2.3
UBP11YKR098C YCR095W-AQ3E787 52 aa0.7□□□□□ -2.3
UBP11YKR098C ATG2P53855 1592 aa0.7□□□□□ -2.3
UBP11YKR098C YSY6P38374 65 aa0.7□□□□□ -2.3
UBP11YKR098C SHU1P38751 150 aa0.7□□□□□ -2.3
UBP11YKR098C YHL005CP38752 130 aa0.7□□□□□ -2.3
UBP11YKR098C YHR173CP38864 112 aa0.7□□□□□ -2.3
UBP11YKR098C SNA2P56508 79 aa0.7□□□□□ -2.3
UBP11YKR098C COX12Q01519 83 aa0.7□□□□□ -2.3
UBP11YKR098C PAU6P0CE90 120 aa0.69□□□□□ -2.3
UBP11YKR098C PAU18P0CE91 120 aa0.69□□□□□ -2.3
UBP11YKR098C PAU8P0CE92 120 aa0.69□□□□□ -2.3
UBP11YKR098C PAU11P0CE93 120 aa0.69□□□□□ -2.3
UBP11YKR098C YBL071CP38185 102 aa0.69□□□□□ -2.3
UBP11YKR098C PAU13P38725 120 aa0.69□□□□□ -2.3
UBP11YKR098C MPC2P38857 129 aa0.69□□□□□ -2.3
UBP11YKR098C YIL086CP40503 102 aa0.69□□□□□ -2.3
UBP11YKR098C PAU4P53427 120 aa0.69□□□□□ -2.3
UBP11YKR098C ERI1P62651 68 aaKnown RBP0.69□□□□□ -2.3
UBP11YKR098C PAU10Q03050 120 aa0.69□□□□□ -2.3
UBP11YKR098C YKL023C-AQ2V2P3 75 aa0.69□□□□□ -2.3
UBP11YKR098C PAU9Q3E770 120 aa0.69□□□□□ -2.3
UBP11YKR098C SNF2P22082 1703 aa0.69□□□□□ -2.3
UBP11YKR098C PAU1P0CE88 120 aa0.69□□□□□ -2.3
UBP11YKR098C PAU14P0CE89 120 aa0.69□□□□□ -2.3
UBP11YKR098C QCR9P22289 66 aa0.69□□□□□ -2.3
UBP11YKR098C MRPL38P35996 138 aaPredicted RBP0.69□□□□□ -2.3
UBP11YKR098C PAU20Q08322 120 aa0.69□□□□□ -2.3
UBP11YKR098C YDR010CQ12426 110 aa0.69□□□□□ -2.3
UBP11YKR098C YOR314WQ12506 109 aa0.69□□□□□ -2.3
UBP11YKR098C YGR121W-AQ3E816 71 aa0.69□□□□□ -2.3
UBP11YKR098C ARO1P08566 1588 aaKnown RBP0.68□□□□□ -2.3
UBP11YKR098C DNF3Q12674 1656 aa0.68□□□□□ -2.3
UBP11YKR098C YAL065CO13511 128 aa0.68□□□□□ -2.3
UBP11YKR098C YKL065W-AQ2V2P2 73 aa0.68□□□□□ -2.3
UBP11YKR098C YIL156W-BQ2V2P4 73 aa0.68□□□□□ -2.3
UBP11YKR098C YOR192C-CQ3E736 78 aa0.68□□□□□ -2.3
UBP11YKR098C YKL018C-AQ3E7A7 99 aa0.68□□□□□ -2.3
UBP11YKR098C IML1P47170 1584 aa0.68□□□□□ -2.3
UBP11YKR098C PDR15Q04182 1529 aaKnown RBP0.68□□□□□ -2.3
UBP11YKR098C DNF2Q12675 1612 aa0.68□□□□□ -2.3
UBP11YKR098C EDC1P53080 175 aaPredicted RBP0.67□□□□□ -2.3
UBP11YKR098C MRX7P53869 86 aa0.67□□□□□ -2.3
UBP11YKR098C YLR146W-AQ2V2P1 62 aa0.67□□□□□ -2.3
UBP11YKR098C YOR032W-AQ8TGS1 66 aa0.67□□□□□ -2.3
UBP11YKR098C PAU7P39545 55 aa0.67□□□□□ -2.3
UBP11YKR098C SPI1P40092 148 aa0.67□□□□□ -2.3
UBP11YKR098C BSC4P53841 131 aa0.67□□□□□ -2.3
UBP11YKR098C YNL190WP53872 204 aa0.67□□□□□ -2.3
UBP11YKR098C YDR246W-AQ3E763 66 aa0.67□□□□□ -2.3
UBP11YKR098C YGR035W-AQ45U48 73 aa0.67□□□□□ -2.3
UBP11YKR098C NOP10Q6Q547 58 aaPredicted RBP0.67□□□□□ -2.3
UBP11YKR098C BUD3P25558 1636 aa0.67□□□□□ -2.3
UBP11YKR098C YBR072C-AQ3E794 53 aa0.66□□□□□ -2.3
UBP11YKR098C YDL022C-AP0C5L6 82 aa0.66□□□□□ -2.3
UBP11YKR098C RPS30AP0CX33 63 aaKnown RBP0.66□□□□□ -2.3
UBP11YKR098C RPS30BP0CX34 63 aaKnown RBP0.66□□□□□ -2.3
UBP11YKR098C AIM19P40502 157 aa0.66□□□□□ -2.3
UBP11YKR098C NUP192P47054 1683 aa0.66□□□□□ -2.3
UBP11YKR098C VMR1P38735 1592 aa0.65□□□□□ -2.3
UBP11YKR098C YNL042W-BQ3E7Z2 85 aa0.65□□□□□ -2.31
UBP11YKR098C SGF11Q03067 99 aa0.64□□□□□ -2.31
UBP11YKR098C RPS11AP0CX47 156 aaKnown RBP0.64□□□□□ -2.31
UBP11YKR098C RPS11BP0CX48 156 aaKnown RBP0.64□□□□□ -2.31
UBP11YKR098C HKR1P41809 1802 aa0.63□□□□□ -2.31
UBP11YKR098C RPL38P49167 78 aaKnown RBP0.63□□□□□ -2.31
UBP11YKR098C YBR201C-AQ2V2Q3 67 aa0.63□□□□□ -2.31
UBP11YKR098C YDR182W-AQ3E796 67 aa0.63□□□□□ -2.31
UBP11YKR098C HUB1Q6Q546 73 aa0.63□□□□□ -2.31
UBP11YKR098C YOL166W-AQ8TGJ1 51 aa0.63□□□□□ -2.31
UBP11YKR098C ATP17Q06405 101 aa0.63□□□□□ -2.31
UBP11YKR098C YOL164W-AQ3E7A5 60 aa0.63□□□□□ -2.31
UBP11YKR098C YMR122W-AQ3E842 84 aa0.63□□□□□ -2.31
UBP11YKR098C YLR157W-DP0CE99 70 aa0.62□□□□□ -2.31
UBP11YKR098C COA2Q3E823 68 aa0.62□□□□□ -2.31
UBP11YKR098C Q0032Q9ZZX7 96 aa0.62□□□□□ -2.31
UBP11YKR098C ATP18P81450 59 aa0.62□□□□□ -2.31
UBP11YKR098C SDH6Q3E785 79 aa0.62□□□□□ -2.31
UBP11YKR098C YMR001C-AQ8TGS9 76 aa0.61□□□□□ -2.31
UBP11YKR098C SEN1Q00416 2231 aaKnown RBP0.61□□□□□ -2.31
UBP11YKR098C FIG2P25653 1609 aa0.61□□□□□ -2.31
UBP11YKR098C YJR107C-AP0CT86 78 aa0.6□□□□□ -2.31
UBP11YKR098C YBL039W-BP0C268 59 aa0.6□□□□□ -2.31
UBP11YKR098C YPR010C-AA5Z2X5 72 aa0.59□□□□□ -2.31
UBP11YKR098C YBR056W-AI2HB52 66 aa0.59□□□□□ -2.31
UBP11YKR098C TOM7P53507 60 aa0.59□□□□□ -2.31
UBP11YKR098C YPR108W-AQ3E7B3 70 aa0.59□□□□□ -2.31
UBP11YKR098C YOL097W-AQ3E7Y9 61 aa0.59□□□□□ -2.31
UBP11YKR098C COX9P07255 59 aa0.59□□□□□ -2.32
UBP11YKR098C COX7P10174 60 aa0.59□□□□□ -2.32
UBP11YKR098C YFR009W-AP0C5M9 85 aa0.58□□□□□ -2.32
Retrieved 100 of 5,963 RNA–protein pairs in 44.5 ms