RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP6YFR010W YDL022C-AP0C5L6 82 aa2.57□□□□□ -2
UBP6YFR010W YOR093CQ12275 1648 aa2.56□□□□□ -2
UBP6YFR010W SLH1P53327 1967 aaKnown RBP2.56□□□□□ -2
UBP6YFR010W YKL018C-AQ3E7A7 99 aa2.56□□□□□ -2
UBP6YFR010W YOR032W-AQ8TGS1 66 aa2.56□□□□□ -2
UBP6YFR010W BPH1P25356 2167 aa2.55□□□□□ -2
UBP6YFR010W YCL042WP25572 119 aa2.54□□□□□ -2
UBP6YFR010W YNL042W-BQ3E7Z2 85 aa2.54□□□□□ -2
UBP6YFR010W ACC1Q00955 2233 aaKnown RBP2.54□□□□□ -2
UBP6YFR010W ARO1P08566 1588 aaKnown RBP2.53□□□□□ -2
UBP6YFR010W YLR255CO13574 117 aa2.52□□□□□ -2.01
UBP6YFR010W BRR2P32639 2163 aaKnown RBP2.52□□□□□ -2.01
UBP6YFR010W AQY2P0CD90 149 aa2.52□□□□□ -2.01
UBP6YFR010W YOR034C-AQ3E735 80 aa2.52□□□□□ -2.01
UBP6YFR010W YDR182W-AQ3E796 67 aa2.52□□□□□ -2.01
UBP6YFR010W YNL146C-AQ3E7Z1 64 aa2.52□□□□□ -2.01
UBP6YFR010W EDC1P53080 175 aaPredicted RBP2.51□□□□□ -2.01
UBP6YFR010W KOG1P38873 1557 aa2.5□□□□□ -2.01
UBP6YFR010W YPR096CO13587 100 aa2.5□□□□□ -2.01
UBP6YFR010W YMR122W-AQ3E842 84 aa2.5□□□□□ -2.01
UBP6YFR010W RPS30AP0CX33 63 aaKnown RBP2.49□□□□□ -2.01
UBP6YFR010W RPS30BP0CX34 63 aaKnown RBP2.49□□□□□ -2.01
UBP6YFR010W YNL190WP53872 204 aa2.49□□□□□ -2.01
UBP6YFR010W SGF11Q03067 99 aa2.49□□□□□ -2.01
UBP6YFR010W MGR2Q02889 113 aa2.48□□□□□ -2.01
UBP6YFR010W ATP17Q06405 101 aa2.48□□□□□ -2.01
UBP6YFR010W YJL009WP47078 108 aa2.47□□□□□ -2.01
UBP6YFR010W YIL086CP40503 102 aa2.47□□□□□ -2.01
UBP6YFR010W YBR201C-AQ2V2Q3 67 aa2.47□□□□□ -2.01
UBP6YFR010W YCR001WP25347 104 aa2.46□□□□□ -2.02
UBP6YFR010W LCL1Q02786 101 aa2.46□□□□□ -2.02
UBP6YFR010W YMR007WQ03675 126 aa2.46□□□□□ -2.02
UBP6YFR010W YOR192C-CQ3E736 78 aa2.46□□□□□ -2.02
UBP6YFR010W PDR15Q04182 1529 aaKnown RBP2.45□□□□□ -2.02
UBP6YFR010W URB1P34241 1764 aaKnown RBP2.45□□□□□ -2.02
UBP6YFR010W YNL122CP53921 115 aaPredicted RBP2.45□□□□□ -2.02
UBP6YFR010W VMR1P38735 1592 aa2.44□□□□□ -2.02
UBP6YFR010W SHU1P38751 150 aa2.44□□□□□ -2.02
UBP6YFR010W HUB1Q6Q546 73 aa2.44□□□□□ -2.02
UBP6YFR010W YOL166W-AQ8TGJ1 51 aa2.44□□□□□ -2.02
UBP6YFR010W Q0032Q9ZZX7 96 aa2.44□□□□□ -2.02
UBP6YFR010W SNF2P22082 1703 aa2.43□□□□□ -2.02
UBP6YFR010W MVB12P42939 101 aa2.42□□□□□ -2.02
UBP6YFR010W ATP18P81450 59 aa2.42□□□□□ -2.02
UBP6YFR010W YHR086W-AQ3E746 53 aa2.42□□□□□ -2.02
UBP6YFR010W DNF3Q12674 1656 aa2.41□□□□□ -2.02
UBP6YFR010W SDH6Q3E785 79 aa2.4□□□□□ -2.03
UBP6YFR010W NUP192P47054 1683 aa2.39□□□□□ -2.03
UBP6YFR010W YOL097W-AQ3E7Y9 61 aa2.39□□□□□ -2.03
UBP6YFR010W YBR032WP38223 100 aa2.38□□□□□ -2.03
UBP6YFR010W HIR3P47171 1648 aa2.38□□□□□ -2.03
UBP6YFR010W YOR072WQ08486 104 aa2.37□□□□□ -2.03
UBP6YFR010W HUG1Q6Q5K6 68 aa2.37□□□□□ -2.03
UBP6YFR010W BLM10P43583 2143 aa2.36□□□□□ -2.03
UBP6YFR010W YHR212W-AP0CX91 67 aa2.36□□□□□ -2.03
UBP6YFR010W COX7P10174 60 aa2.36□□□□□ -2.03
UBP6YFR010W YDL012CQ12489 107 aa2.36□□□□□ -2.03
UBP6YFR010W ATG2P53855 1592 aa2.34□□□□□ -2.03
UBP6YFR010W YMR141CP40211 102 aa2.34□□□□□ -2.03
UBP6YFR010W YOL013W-AP0C272 63 aaPredicted RBP2.33□□□□□ -2.04
UBP6YFR010W YLR146W-AQ2V2P1 62 aa2.33□□□□□ -2.04
UBP6YFR010W YAR064WP39563 99 aa2.32□□□□□ -2.04
UBP6YFR010W YJR128WP47162 119 aa2.32□□□□□ -2.04
UBP6YFR010W SEC16P48415 2195 aaKnown RBP2.32□□□□□ -2.04
UBP6YFR010W YLR157W-DP0CE99 70 aa2.32□□□□□ -2.04
UBP6YFR010W YJR107C-AP0CT86 78 aa2.32□□□□□ -2.04
UBP6YFR010W YPR108W-AQ3E7B3 70 aa2.32□□□□□ -2.04
UBP6YFR010W YMR001C-AQ8TGS9 76 aa2.32□□□□□ -2.04
UBP6YFR010W POL2P21951 2222 aaKnown RBP2.3□□□□□ -2.04
UBP6YFR010W YBL039W-BP0C268 59 aa2.3□□□□□ -2.04
UBP6YFR010W BEM2P39960 2167 aaKnown RBP2.3□□□□□ -2.04
UBP6YFR010W GCN2P15442 1659 aa2.28□□□□□ -2.04
UBP6YFR010W YIL102CP40488 101 aa2.26□□□□□ -2.05
UBP6YFR010W RPL38P49167 78 aaKnown RBP2.26□□□□□ -2.05
UBP6YFR010W YBR200W-AQ3E755 54 aa2.26□□□□□ -2.05
UBP6YFR010W HFA1P32874 2273 aa2.25□□□□□ -2.05
UBP6YFR010W FAB1P34756 2278 aa2.25□□□□□ -2.05
UBP6YFR010W RPC10P40422 70 aa2.24□□□□□ -2.05
UBP6YFR010W YOR011W-AQ3E807 68 aa2.24□□□□□ -2.05
UBP6YFR010W HHY1P39982 102 aa2.23□□□□□ -2.05
UBP6YFR010W BUD3P25558 1636 aa2.23□□□□□ -2.05
UBP6YFR010W FIG2P25653 1609 aa2.2□□□□□ -2.06
UBP6YFR010W YBR072C-AQ3E794 53 aa2.2□□□□□ -2.06
UBP6YFR010W YOR394C-AQ8TGJ0 55 aa2.18□□□□□ -2.06
UBP6YFR010W YPR010C-AA5Z2X5 72 aa2.17□□□□□ -2.06
UBP6YFR010W YGR025WP53216 100 aa2.17□□□□□ -2.06
UBP6YFR010W YHR213W-BQ8TGK1 99 aa2.14□□□□□ -2.07
UBP6YFR010W AUA1P32450 94 aa2.13□□□□□ -2.07
UBP6YFR010W TOS6P48560 102 aa2.13□□□□□ -2.07
UBP6YFR010W OLI1P61829 76 aa2.13□□□□□ -2.07
UBP6YFR010W RPS27AP35997 82 aaKnown RBP2.12□□□□□ -2.07
UBP6YFR010W HKR1P41809 1802 aa2.11□□□□□ -2.07
UBP6YFR010W NUM1Q00402 2748 aa2.11□□□□□ -2.07
UBP6YFR010W URA2P07259 2214 aaKnown RBP2.1□□□□□ -2.07
UBP6YFR010W YBR230W-AQ3E762 66 aa2.09□□□□□ -2.07
UBP6YFR010W COA2Q3E823 68 aa2.09□□□□□ -2.07
UBP6YFR010W YFR009W-AP0C5M9 85 aa2.08□□□□□ -2.08
UBP6YFR010W HUA1P40325 198 aa2.07□□□□□ -2.08
UBP6YFR010W RPL43AP0CX25 92 aaKnown RBP2.04□□□□□ -2.08
UBP6YFR010W RPL43BP0CX26 92 aa2.04□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms