RNA–Protein interactions for RNA: YDR457W

TOM1, Transcript of E3 ubiquitin ligase of the hect-domain class, yeast

Gene TOM1, Length 9,807 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TOM1	YDR457W	RPL43A	P0CX25	92 aa	Known RBP	2.01	□□□□□ -2.09
TOM1	YDR457W	RPL43B	P0CX26	92 aa		2.01	□□□□□ -2.09
TOM1	YDR457W	YJR085C	P47131	105 aa	Known RBP	2	□□□□□ -2.09
TOM1	YDR457W	YHR125W	P38831	101 aa		2	□□□□□ -2.09
TOM1	YDR457W	Q0297	Q9ZZV8	51 aa		2	□□□□□ -2.09
TOM1	YDR457W	TY1B-NL2	Q99337	1749 aa	Known RBP	2	□□□□□ -2.09
TOM1	YDR457W	YGL193C	P53097	103 aa		1.99	□□□□□ -2.09
TOM1	YDR457W	YJL197C-A	P0C5P0	93 aa		1.99	□□□□□ -2.09
TOM1	YDR457W	NTE1	Q04958	1679 aa		1.98	□□□□□ -2.09
TOM1	YDR457W	YPR195C	Q06594	109 aa		1.98	□□□□□ -2.09
TOM1	YDR457W	YER145C-A	A0A023PYF4	145 aa		1.98	□□□□□ -2.09
TOM1	YDR457W	YGR146C-A	Q8TGT9	53 aa		1.97	□□□□□ -2.09
TOM1	YDR457W	YOR394C-A	Q8TGJ0	55 aa		1.97	□□□□□ -2.09
TOM1	YDR457W	APC1	P53886	1748 aa		1.96	□□□□□ -2.1
TOM1	YDR457W	YOR316C-A	Q3E806	69 aa		1.96	□□□□□ -2.1
TOM1	YDR457W	AUA1	P32450	94 aa		1.96	□□□□□ -2.1
TOM1	YDR457W	HHY1	P39982	102 aa		1.96	□□□□□ -2.1
TOM1	YDR457W	YBR072C-A	Q3E794	53 aa		1.96	□□□□□ -2.1
TOM1	YDR457W	YNL162W-A	Q3E7A8	72 aa		1.96	□□□□□ -2.1
TOM1	YDR457W	YBT1	P32386	1661 aa		1.95	□□□□□ -2.1
TOM1	YDR457W	YJR128W	P47162	119 aa		1.95	□□□□□ -2.1
TOM1	YDR457W	Q0017	Q9ZZX8	53 aa		1.95	□□□□□ -2.1
TOM1	YDR457W	MLP1	Q02455	1875 aa	Known RBP	1.95	□□□□□ -2.1
TOM1	YDR457W	RDS3	Q06835	107 aa	Predicted RBP	1.95	□□□□□ -2.1
TOM1	YDR457W	TDA8	Q6B2U8	126 aa		1.95	□□□□□ -2.1
TOM1	YDR457W	USO1	P25386	1790 aa		1.94	□□□□□ -2.1
TOM1	YDR457W	YEL045C	P32616	141 aa		1.93	□□□□□ -2.1
TOM1	YDR457W	FYV12	Q08559	129 aa		1.93	□□□□□ -2.1
TOM1	YDR457W	GAT4	P40569	121 aa		1.93	□□□□□ -2.1
TOM1	YDR457W	YHR073W-A	P0C5N7	58 aa		1.92	□□□□□ -2.1
TOM1	YDR457W	YAL067W-A	Q8TGK6	75 aa		1.91	□□□□□ -2.1
TOM1	YDR457W	RPO21	P04050	1733 aa	Known RBP	1.9	□□□□□ -2.1
TOM1	YDR457W	YMR230W-A	Q3E7B5	62 aa		1.9	□□□□□ -2.11
TOM1	YDR457W	RRP5	Q05022	1729 aa	Known RBP	1.9	□□□□□ -2.11
TOM1	YDR457W	YER175W-A	Q8TGU4	54 aa		1.9	□□□□□ -2.11
TOM1	YDR457W	YRF1-1	P0CX20	1796 aa		1.89	□□□□□ -2.11
TOM1	YDR457W	YRF1-5	P0CX21	1796 aa		1.89	□□□□□ -2.11
TOM1	YDR457W	YRF1-8	P0CX22	1796 aa		1.89	□□□□□ -2.11
TOM1	YDR457W	YOL166W-A	Q8TGJ1	51 aa		1.87	□□□□□ -2.11
TOM1	YDR457W	YLR255C	O13574	117 aa		1.86	□□□□□ -2.11
TOM1	YDR457W	YDR115W	Q04598	105 aa		1.86	□□□□□ -2.11
TOM1	YDR457W	FAB1	P34756	2278 aa		1.85	□□□□□ -2.11
TOM1	YDR457W	YER078W-A	Q3E7A2	54 aa		1.85	□□□□□ -2.11
TOM1	YDR457W	TY1B-BR	Q12193	1756 aa		1.84	□□□□□ -2.11
TOM1	YDR457W	TY1B-GR3	Q12316	1755 aa		1.84	□□□□□ -2.11
TOM1	YDR457W	TY1B-OR	Q92393	1755 aa		1.84	□□□□□ -2.11
TOM1	YDR457W	FIG2	P25653	1609 aa		1.83	□□□□□ -2.12
TOM1	YDR457W	TY2B-LR1	P0C2J3	1770 aa		1.83	□□□□□ -2.12
TOM1	YDR457W	TY2B-F	P0CX63	1770 aa		1.83	□□□□□ -2.12
TOM1	YDR457W	TY2B-GR2	P0CX64	1770 aa		1.83	□□□□□ -2.12
TOM1	YDR457W	TY2B-C	P25384	1770 aa		1.83	□□□□□ -2.12
TOM1	YDR457W	TY2B-DR2	Q03494	1770 aa		1.83	□□□□□ -2.12
TOM1	YDR457W	TY1B-DR1	Q03855	1755 aa		1.83	□□□□□ -2.12
TOM1	YDR457W	TY2B-DR3	Q07791	1770 aa	Known RBP	1.83	□□□□□ -2.12
TOM1	YDR457W	TY2B-OR1	Q12113	1770 aa		1.83	□□□□□ -2.12
TOM1	YDR457W	TY2B-DR1	Q12472	1770 aa		1.83	□□□□□ -2.12
TOM1	YDR457W	TY2B-OR2	Q12501	1770 aa		1.83	□□□□□ -2.12
TOM1	YDR457W	RIM15	P43565	1770 aa		1.82	□□□□□ -2.12
TOM1	YDR457W	YDL012C	Q12489	107 aa		1.81	□□□□□ -2.12
TOM1	YDR457W	RPL37B	P51402	88 aa	Known RBP	1.81	□□□□□ -2.12
TOM1	YDR457W	TAO3	P40468	2376 aa		1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-H	O13535	1793 aa		1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-DR5	P0C2I2	1755 aa		1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-DR6	P0C2I3	1755 aa		1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-LR2	P0C2I5	1755 aa		1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-PR2	P0C2J0	1756 aa		1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-JR1	P47098	1755 aa		1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-ML2	Q03434	1755 aa	Known RBP	1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-ER1	Q03612	1755 aa		1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-ML1	Q04711	1755 aa	Known RBP	1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-GR2	Q12269	1755 aa		1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-OL	Q12273	1755 aa		1.8	□□□□□ -2.12
TOM1	YDR457W	TY1B-PL	Q12414	1755 aa	Known RBP	1.8	□□□□□ -2.12
TOM1	YDR457W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	1.8	□□□□□ -2.12	not detected
TOM1	YDR457W	YCR108C	Q3E819	63 aa		1.79	□□□□□ -2.12
TOM1	YDR457W	TY4B-H	P0C2J7	1802 aa		1.79	□□□□□ -2.12
TOM1	YDR457W	YOL164W-A	Q3E7A5	60 aa		1.79	□□□□□ -2.12
TOM1	YDR457W	TY2B-B	Q12491	1770 aa		1.79	□□□□□ -2.12
TOM1	YDR457W	CUP1-1	P0CX80	61 aa		1.79	□□□□□ -2.12
TOM1	YDR457W	CUP1-2	P0CX81	61 aa		1.79	□□□□□ -2.12
TOM1	YDR457W	YHR050W-A	Q05451	56 aa		1.79	□□□□□ -2.12
TOM1	YDR457W	TY1B-DR3	Q99231	1755 aa		1.78	□□□□□ -2.12
TOM1	YDR457W	YLL066W-B	Q8TGJ7	56 aa		1.77	□□□□□ -2.13
TOM1	YDR457W	YHR032W-A	P0C5N6	59 aa		1.77	□□□□□ -2.13
TOM1	YDR457W	YDR246W-A	Q3E763	66 aa		1.76	□□□□□ -2.13
TOM1	YDR457W	FAS2	P19097	1887 aa	Known RBP	1.76	□□□□□ -2.13
TOM1	YDR457W	TY1B-JR2	P47100	1755 aa	Known RBP	1.76	□□□□□ -2.13
TOM1	YDR457W	TY1B-ER2	Q03619	1755 aa		1.76	□□□□□ -2.13
TOM1	YDR457W	TY1B-MR1	Q04214	1755 aa		1.76	□□□□□ -2.13
TOM1	YDR457W	TY1B-MR2	Q04670	1755 aa	Known RBP	1.76	□□□□□ -2.13
TOM1	YDR457W	TY1B-LR1	Q12088	1755 aa	Known RBP	1.76	□□□□□ -2.13
TOM1	YDR457W	TY1B-NL1	Q12112	1755 aa		1.76	□□□□□ -2.13
TOM1	YDR457W	TY1B-GR1	Q12141	1755 aa		1.76	□□□□□ -2.13
TOM1	YDR457W	TY1B-BL	Q12490	1755 aa		1.76	□□□□□ -2.13
TOM1	YDR457W	YDR034W-B	Q6Q5X2	51 aa		1.75	□□□□□ -2.13
TOM1	YDR457W	YBR016W	P38216	128 aa		1.74	□□□□□ -2.13
TOM1	YDR457W	SEN1	Q00416	2231 aa	Known RBP	1.73	□□□□□ -2.13

Retrieved 100 of 5,963 RNA–protein pairs in 66.7 ms