RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C RPS22BQ3E7Y3 130 aaKnown RBP0.66□□□□□ -2.3
VPS54YDR027C PCC1Q3E833 88 aa0.66□□□□□ -2.3
VPS54YDR027C YBR292CP38357 123 aa0.65□□□□□ -2.3
VPS54YDR027C YAL064WP39711 94 aa0.65□□□□□ -2.3
VPS54YDR027C YNL198CP40166 100 aa0.65□□□□□ -2.3
VPS54YDR027C PAU5P43575 122 aa0.65□□□□□ -2.3
VPS54YDR027C IMP2P46972 177 aa0.65□□□□□ -2.3
VPS54YDR027C LSM6Q06406 86 aaKnown RBP0.65□□□□□ -2.3
VPS54YDR027C YOL097W-AQ3E7Y9 61 aa0.65□□□□□ -2.3
VPS54YDR027C QCR9P22289 66 aa0.65□□□□□ -2.31
VPS54YDR027C PAU2P32612 120 aa0.65□□□□□ -2.31
VPS54YDR027C SMX2P40204 77 aaKnown RBP0.65□□□□□ -2.31
VPS54YDR027C CWP2P43497 92 aa0.65□□□□□ -2.31
VPS54YDR027C MRX7P53869 86 aa0.65□□□□□ -2.31
VPS54YDR027C YOR072WQ08486 104 aa0.65□□□□□ -2.31
VPS54YDR027C HMRA2P0CY13 119 aa0.64□□□□□ -2.31
VPS54YDR027C LSM2P38203 95 aaKnown RBP0.64□□□□□ -2.31
VPS54YDR027C YSY6P38374 65 aa0.64□□□□□ -2.31
VPS54YDR027C LCL2Q08045 131 aa0.64□□□□□ -2.31
VPS54YDR027C YPR145C-AQ2V2P0 78 aa0.64□□□□□ -2.31
VPS54YDR027C YGR121W-AQ3E816 71 aa0.64□□□□□ -2.31
VPS54YDR027C YER188C-AP0C0V2 99 aa0.64□□□□□ -2.31
VPS54YDR027C YCR001WP25347 104 aa0.64□□□□□ -2.31
VPS54YDR027C PAU24P38155 120 aa0.64□□□□□ -2.31
VPS54YDR027C PAU12P53343 120 aa0.64□□□□□ -2.31
VPS54YDR027C YIL134C-AQ45U18 67 aa0.64□□□□□ -2.31
VPS54YDR027C HUB1Q6Q546 73 aa0.64□□□□□ -2.31
VPS54YDR027C COX23P38824 151 aa0.63□□□□□ -2.31
VPS54YDR027C YHR173CP38864 112 aa0.63□□□□□ -2.31
VPS54YDR027C VPS55P47111 140 aa0.63□□□□□ -2.31
VPS54YDR027C YGL041C-BQ3E750 60 aa0.63□□□□□ -2.31
VPS54YDR027C YDR246W-AQ3E763 66 aa0.63□□□□□ -2.31
VPS54YDR027C RPS22AP0C0W1 130 aaKnown RBP0.63□□□□□ -2.31
VPS54YDR027C RPS29AP41057 56 aaKnown RBP0.63□□□□□ -2.31
VPS54YDR027C BSC4P53841 131 aa0.63□□□□□ -2.31
VPS54YDR027C MRPL31P14063 131 aaPredicted RBP0.62□□□□□ -2.31
VPS54YDR027C PAU7P39545 55 aa0.62□□□□□ -2.31
VPS54YDR027C SNA2P56508 79 aa0.62□□□□□ -2.31
VPS54YDR027C ATP17Q06405 101 aa0.62□□□□□ -2.31
VPS54YDR027C RPS11AP0CX47 156 aaKnown RBP0.62□□□□□ -2.31
VPS54YDR027C RPS11BP0CX48 156 aaKnown RBP0.62□□□□□ -2.31
VPS54YDR027C AIM4P38305 123 aaPredicted RBP0.62□□□□□ -2.31
VPS54YDR027C YMR141CP40211 102 aa0.62□□□□□ -2.31
VPS54YDR027C NCE101Q02820 53 aa0.62□□□□□ -2.31
VPS54YDR027C YCR095W-AQ3E787 52 aa0.62□□□□□ -2.31
VPS54YDR027C YBR032WP38223 100 aa0.61□□□□□ -2.31
VPS54YDR027C MPC2P38857 129 aa0.61□□□□□ -2.31
VPS54YDR027C YNL122CP53921 115 aaPredicted RBP0.61□□□□□ -2.31
VPS54YDR027C MGR2Q02889 113 aa0.61□□□□□ -2.31
VPS54YDR027C YOR376W-AQ3E805 51 aa0.61□□□□□ -2.31
VPS54YDR027C RPL39P04650 51 aa0.61□□□□□ -2.31
VPS54YDR027C YDL022C-AP0C5L6 82 aa0.61□□□□□ -2.31
VPS54YDR027C MRPL38P35996 138 aaPredicted RBP0.61□□□□□ -2.31
VPS54YDR027C HUA1P40325 198 aa0.61□□□□□ -2.31
VPS54YDR027C YDR210WQ03482 75 aa0.61□□□□□ -2.31
VPS54YDR027C YMR122CQ03879 124 aa0.61□□□□□ -2.31
VPS54YDR027C HOR7Q05827 59 aa0.61□□□□□ -2.31
VPS54YDR027C RPL33AP05744 107 aaKnown RBP0.61□□□□□ -2.31
VPS54YDR027C EDC1P53080 175 aaPredicted RBP0.61□□□□□ -2.31
VPS54YDR027C SEN15Q04675 128 aa0.61□□□□□ -2.31
VPS54YDR027C COX9P07255 59 aa0.6□□□□□ -2.31
VPS54YDR027C PAU6P0CE90 120 aa0.6□□□□□ -2.31
VPS54YDR027C PAU18P0CE91 120 aa0.6□□□□□ -2.31
VPS54YDR027C PAU8P0CE92 120 aa0.6□□□□□ -2.31
VPS54YDR027C PAU11P0CE93 120 aa0.6□□□□□ -2.31
VPS54YDR027C TIM12P32830 109 aa0.6□□□□□ -2.31
VPS54YDR027C PAU13P38725 120 aa0.6□□□□□ -2.31
VPS54YDR027C PAU4P53427 120 aa0.6□□□□□ -2.31
VPS54YDR027C PAU10Q03050 120 aa0.6□□□□□ -2.31
VPS54YDR027C PAU9Q3E770 120 aa0.6□□□□□ -2.31
VPS54YDR027C YOR011W-AQ3E807 68 aa0.6□□□□□ -2.31
VPS54YDR027C YIL163CP40448 117 aa0.6□□□□□ -2.31
VPS54YDR027C TOS6P48560 102 aa0.6□□□□□ -2.31
VPS54YDR027C YLR194CQ05777 254 aa0.6□□□□□ -2.31
VPS54YDR027C YGR240C-AQ3E786 66 aa0.6□□□□□ -2.31
VPS54YDR027C RRT15Q3E811 62 aa0.6□□□□□ -2.31
VPS54YDR027C YLR307C-AQ3E825 87 aa0.6□□□□□ -2.31
VPS54YDR027C YOL166W-AQ8TGJ1 51 aa0.6□□□□□ -2.31
VPS54YDR027C YGL014C-AP0C5N1 53 aa0.59□□□□□ -2.32
VPS54YDR027C PAU1P0CE88 120 aa0.59□□□□□ -2.32
VPS54YDR027C PAU14P0CE89 120 aa0.59□□□□□ -2.32
VPS54YDR027C YBL071CP38185 102 aa0.59□□□□□ -2.32
VPS54YDR027C YAR064WP39563 99 aa0.59□□□□□ -2.32
VPS54YDR027C ERI1P62651 68 aaKnown RBP0.59□□□□□ -2.32
VPS54YDR027C YMR007WQ03675 126 aa0.59□□□□□ -2.32
VPS54YDR027C YDR010CQ12426 110 aa0.59□□□□□ -2.32
VPS54YDR027C YBR230W-AQ3E762 66 aa0.59□□□□□ -2.32
VPS54YDR027C YLR255CO13574 117 aa0.58□□□□□ -2.32
VPS54YDR027C COX7P10174 60 aa0.58□□□□□ -2.32
VPS54YDR027C YIL102CP40488 101 aa0.58□□□□□ -2.32
VPS54YDR027C PAU20Q08322 120 aa0.58□□□□□ -2.32
VPS54YDR027C CCW12Q12127 133 aa0.58□□□□□ -2.32
VPS54YDR027C YNL042W-BQ3E7Z2 85 aa0.58□□□□□ -2.32
VPS54YDR027C FPR2P32472 135 aa0.58□□□□□ -2.32
VPS54YDR027C RPL37AP49166 88 aaKnown RBP0.58□□□□□ -2.32
VPS54YDR027C NOP10Q6Q547 58 aaPredicted RBP0.58□□□□□ -2.32
VPS54YDR027C YJR107C-AP0CT86 78 aa0.57□□□□□ -2.32
VPS54YDR027C SHU1P38751 150 aa0.57□□□□□ -2.32
VPS54YDR027C YOL013W-AP0C272 63 aaPredicted RBP0.57□□□□□ -2.32
VPS54YDR027C YGR025WP53216 100 aa0.57□□□□□ -2.32
Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms