RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	YNR034W-A	Q3E841	98 aa		0.5	□□□□□ -2.33
NCL1	YBL024W	MYO1	P08964	1928 aa		0.49	□□□□□ -2.33
NCL1	YBL024W	HMRA1	P0CY11	126 aa		0.49	□□□□□ -2.33
NCL1	YBL024W	YBL071C	P38185	102 aa		0.49	□□□□□ -2.33
NCL1	YBL024W	ICY1	Q04329	127 aa		0.49	□□□□□ -2.33
NCL1	YBL024W	RPS11A	P0CX47	156 aa	Known RBP	0.49	□□□□□ -2.33
NCL1	YBL024W	RPS11B	P0CX48	156 aa	Known RBP	0.49	□□□□□ -2.33
NCL1	YBL024W	RPA12	P32529	125 aa	Known RBP	0.49	□□□□□ -2.33
NCL1	YBL024W	YHL005C	P38752	130 aa		0.48	□□□□□ -2.33
NCL1	YBL024W	RPS29B	P41058	56 aa	Known RBP	0.48	□□□□□ -2.33
NCL1	YBL024W	MRP17	P28778	131 aa		0.47	□□□□□ -2.33
NCL1	YBL024W	MOT1	P32333	1867 aa		0.47	□□□□□ -2.33
NCL1	YBL024W	SPC1	P46965	94 aa		0.47	□□□□□ -2.33
NCL1	YBL024W	NHP10	Q03435	203 aa		0.47	□□□□□ -2.33
NCL1	YBL024W	PAU20	Q08322	120 aa		0.47	□□□□□ -2.33
NCL1	YBL024W	EMC5	P40540	141 aa		0.46	□□□□□ -2.34
NCL1	YBL024W	YBR292C	P38357	123 aa		0.45	□□□□□ -2.34
NCL1	YBL024W	ZEO1	Q08245	113 aa		0.45	□□□□□ -2.34
NCL1	YBL024W	YPL225W	Q08971	146 aa	Known RBP	0.45	□□□□□ -2.34
NCL1	YBL024W	RSM18	P40033	138 aa		0.44	□□□□□ -2.34
NCL1	YBL024W	MSL1	P40567	111 aa	Predicted RBP	0.44	□□□□□ -2.34
NCL1	YBL024W	YNL190W	P53872	204 aa		0.44	□□□□□ -2.34
NCL1	YBL024W	PAU1	P0CE88	120 aa		0.44	□□□□□ -2.34
NCL1	YBL024W	PAU14	P0CE89	120 aa		0.44	□□□□□ -2.34
NCL1	YBL024W	PAU8	P0CE92	120 aa		0.44	□□□□□ -2.34
NCL1	YBL024W	PAU11	P0CE93	120 aa		0.44	□□□□□ -2.34
NCL1	YBL024W	PAU13	P38725	120 aa		0.44	□□□□□ -2.34
NCL1	YBL024W	AIM19	P40502	157 aa		0.44	□□□□□ -2.34
NCL1	YBL024W	PAU10	Q03050	120 aa		0.44	□□□□□ -2.34
NCL1	YBL024W	PAU9	Q3E770	120 aa		0.44	□□□□□ -2.34
NCL1	YBL024W	RPC10	P40422	70 aa		0.42	□□□□□ -2.34
NCL1	YBL024W	Q0297	Q9ZZV8	51 aa		0.42	□□□□□ -2.34
NCL1	YBL024W	BPH1	P25356	2167 aa		0.42	□□□□□ -2.34
NCL1	YBL024W	PAU4	P53427	120 aa		0.42	□□□□□ -2.34
NCL1	YBL024W	YDR042C	Q03205	200 aa		0.4	□□□□□ -2.35
NCL1	YBL024W	YDR029W	Q12111	104 aa		0.4	□□□□□ -2.35
NCL1	YBL024W	SNU13	P39990	126 aa	Known RBP	0.39	□□□□□ -2.35
NCL1	YBL024W	YNL198C	P40166	100 aa		0.38	□□□□□ -2.35
NCL1	YBL024W	SUS1	Q6WNK7	96 aa		0.38	□□□□□ -2.35
NCL1	YBL024W	YNL042W-B	Q3E7Z2	85 aa		0.37	□□□□□ -2.35
NCL1	YBL024W	YCR075W-A	Q3E830	75 aa		0.37	□□□□□ -2.35
NCL1	YBL024W	NHP2	P32495	156 aa	Predicted RBP	0.36	□□□□□ -2.35
NCL1	YBL024W	Q0032	Q9ZZX7	96 aa		0.36	□□□□□ -2.35
NCL1	YBL024W	STT4	P37297	1900 aa		0.36	□□□□□ -2.35
NCL1	YBL024W	YJR107C-A	P0CT86	78 aa		0.35	□□□□□ -2.35
NCL1	YBL024W	BSC4	P53841	131 aa		0.35	□□□□□ -2.35
NCL1	YBL024W	YBR201C-A	Q2V2Q3	67 aa		0.35	□□□□□ -2.35
NCL1	YBL024W	MHF2	Q3E829	80 aa		0.34	□□□□□ -2.35
NCL1	YBL024W	YGR035W-A	Q45U48	73 aa		0.34	□□□□□ -2.35
NCL1	YBL024W	YBR016W	P38216	128 aa		0.34	□□□□□ -2.36
NCL1	YBL024W	RPL38	P49167	78 aa	Known RBP	0.34	□□□□□ -2.36
NCL1	YBL024W	COX7	P10174	60 aa		0.33	□□□□□ -2.36
NCL1	YBL024W	YMR082C	Q04276	118 aa		0.33	□□□□□ -2.36
NCL1	YBL024W	MLP1	Q02455	1875 aa	Known RBP	0.33	□□□□□ -2.36
NCL1	YBL024W	YFR009W-A	P0C5M9	85 aa		0.33	□□□□□ -2.36
NCL1	YBL024W	SCP1	Q08873	200 aa		0.33	□□□□□ -2.36
NCL1	YBL024W	ECM12	O13529	151 aa		0.32	□□□□□ -2.36
NCL1	YBL024W	YCL001W-B	Q96VH2	84 aa		0.32	□□□□□ -2.36
NCL1	YBL024W	YMR122W-A	Q3E842	84 aa		0.31	□□□□□ -2.36
NCL1	YBL024W	PDX3	P38075	228 aa	Known RBP	0.31	□□□□□ -2.36
NCL1	YBL024W	YAL065C	O13511	128 aa		0.29	□□□□□ -2.36
NCL1	YBL024W	YGL194C-A	Q2V2P6	80 aa		0.29	□□□□□ -2.36
NCL1	YBL024W	YHR214C-D	P0CX93	97 aa		0.29	□□□□□ -2.36
NCL1	YBL024W	TOM6	P33448	61 aa		0.29	□□□□□ -2.36
NCL1	YBL024W	PAU23	Q07987	124 aa		0.29	□□□□□ -2.36
NCL1	YBL024W	PAU17	Q12370	124 aa		0.29	□□□□□ -2.36
NCL1	YBL024W	YMR175W-A	Q3E766	64 aa		0.29	□□□□□ -2.36
NCL1	YBL024W	FPR2	P32472	135 aa		0.28	□□□□□ -2.36
NCL1	YBL024W	RPS27A	P35997	82 aa	Known RBP	0.28	□□□□□ -2.36
NCL1	YBL024W	RPS27B	P38711	82 aa		0.28	□□□□□ -2.36
NCL1	YBL024W	YIL134C-A	Q45U18	67 aa		0.28	□□□□□ -2.37
NCL1	YBL024W	YOR032W-A	Q8TGS1	66 aa		0.28	□□□□□ -2.37
NCL1	YBL024W	YFR010W-A	P0C5N0	62 aa		0.26	□□□□□ -2.37
NCL1	YBL024W	ATX1	P38636	73 aa		0.26	□□□□□ -2.37
NCL1	YBL024W	ATP18	P81450	59 aa		0.26	□□□□□ -2.37
NCL1	YBL024W	RPS29A	P41057	56 aa	Known RBP	0.26	□□□□□ -2.37
NCL1	YBL024W	YOR343C	Q12484	108 aa		0.25	□□□□□ -2.37
NCL1	YBL024W	SDH6	Q3E785	79 aa		0.25	□□□□□ -2.37
NCL1	YBL024W	YKL068W-A	Q3E826	78 aa		0.24	□□□□□ -2.37
NCL1	YBL024W	NOP10	Q6Q547	58 aa	Predicted RBP	0.24	□□□□□ -2.37
NCL1	YBL024W	YIL156W-B	Q2V2P4	73 aa		0.23	□□□□□ -2.37
NCL1	YBL024W	SGF11	Q03067	99 aa		0.22	□□□□□ -2.37
NCL1	YBL024W	CWP2	P43497	92 aa		0.2	□□□□□ -2.38
NCL1	YBL024W	YCR085W	P25650	117 aa		0.2	□□□□□ -2.38
NCL1	YBL024W	SIP18	P50263	79 aa		0.2	□□□□□ -2.38
NCL1	YBL024W	YOL097W-A	Q3E7Y9	61 aa		0.2	□□□□□ -2.38
NCL1	YBL024W	EDC1	P53080	175 aa	Predicted RBP	0.19	□□□□□ -2.38
NCL1	YBL024W	YOR105W	Q08504	108 aa		0.19	□□□□□ -2.38
NCL1	YBL024W	POC4	Q12245	148 aa	Predicted RBP	0.19	□□□□□ -2.38
NCL1	YBL024W	YKL065W-A	Q2V2P2	73 aa		0.19	□□□□□ -2.38
NCL1	YBL024W	YPR108W-A	Q3E7B3	70 aa		0.19	□□□□□ -2.38
NCL1	YBL024W	YBR032W	P38223	100 aa		0.18	□□□□□ -2.38
NCL1	YBL024W	YPR145C-A	Q2V2P0	78 aa		0.18	□□□□□ -2.38
NCL1	YBL024W	RPL39	P04650	51 aa		0.18	□□□□□ -2.38
NCL1	YBL024W	YGR025W	P53216	100 aa		0.18	□□□□□ -2.38
NCL1	YBL024W	YOR314W	Q12506	109 aa		0.17	□□□□□ -2.38
NCL1	YBL024W	YDR381C-A	Q3E6R5	114 aa		0.17	□□□□□ -2.38
NCL1	YBL024W	HOR7	Q05827	59 aa		0.15	□□□□□ -2.38
NCL1	YBL024W	YCR108C	Q3E819	63 aa		0.15	□□□□□ -2.39
NCL1	YBL024W	YDL022C-A	P0C5L6	82 aa		0.14	□□□□□ -2.39

Retrieved 100 of 5,963 RNA–protein pairs in 28.1 ms