RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C TOM6P33448 61 aa0.33□□□□□ -2.36
RTR1YER139C ATX1P38636 73 aa0.33□□□□□ -2.36
RTR1YER139C YKL065W-AQ2V2P2 73 aa0.33□□□□□ -2.36
RTR1YER139C YOL164W-AQ3E7A5 60 aa0.33□□□□□ -2.36
RTR1YER139C YOL097W-AQ3E7Y9 61 aa0.33□□□□□ -2.36
RTR1YER139C POL1P13382 1468 aa0.33□□□□□ -2.36
RTR1YER139C YRF1-6P53819 1859 aa0.33□□□□□ -2.36
RTR1YER139C SWR1Q05471 1514 aa0.33□□□□□ -2.36
RTR1YER139C YSP2Q06681 1438 aa0.32□□□□□ -2.36
RTR1YER139C TY4B-HP0C2J7 1802 aa0.32□□□□□ -2.36
RTR1YER139C SEC7P11075 2009 aaKnown RBP0.32□□□□□ -2.36
RTR1YER139C YAL065CO13511 128 aa0.32□□□□□ -2.36
RTR1YER139C YNL198CP40166 100 aa0.32□□□□□ -2.36
RTR1YER139C BLM10P43583 2143 aa0.31□□□□□ -2.36
RTR1YER139C YCR085WP25650 117 aa0.31□□□□□ -2.36
RTR1YER139C YBR016WP38216 128 aa0.31□□□□□ -2.36
RTR1YER139C YGL194C-AQ2V2P6 80 aa0.31□□□□□ -2.36
RTR1YER139C YBR201C-AQ2V2Q3 67 aa0.31□□□□□ -2.36
RTR1YER139C YMR122W-AQ3E842 84 aa0.31□□□□□ -2.36
RTR1YER139C Q0032Q9ZZX7 96 aa0.31□□□□□ -2.36
RTR1YER139C RPC10P40422 70 aa0.3□□□□□ -2.36
RTR1YER139C EDC1P53080 175 aaPredicted RBP0.3□□□□□ -2.36
RTR1YER139C YGR025WP53216 100 aa0.3□□□□□ -2.36
RTR1YER139C POC4Q12245 148 aaPredicted RBP0.3□□□□□ -2.36
RTR1YER139C YOR314WQ12506 109 aa0.3□□□□□ -2.36
RTR1YER139C BNI1P41832 1953 aa0.3□□□□□ -2.36
RTR1YER139C RPA190P10964 1664 aaKnown RBP0.3□□□□□ -2.36
RTR1YER139C URB1P34241 1764 aaKnown RBP0.29□□□□□ -2.36
RTR1YER139C YHR214C-DP0CX93 97 aa0.29□□□□□ -2.36
RTR1YER139C FPR2P32472 135 aa0.29□□□□□ -2.36
RTR1YER139C YBR032WP38223 100 aa0.29□□□□□ -2.36
RTR1YER139C ATP18P81450 59 aa0.29□□□□□ -2.36
RTR1YER139C ESP1Q03018 1630 aa0.28□□□□□ -2.36
RTR1YER139C MMS22Q06164 1454 aa0.28□□□□□ -2.37
RTR1YER139C YJR107C-AP0CT86 78 aa0.27□□□□□ -2.37
RTR1YER139C PAU23Q07987 124 aa0.27□□□□□ -2.37
RTR1YER139C YOR105WQ08504 108 aa0.27□□□□□ -2.37
RTR1YER139C PAU17Q12370 124 aa0.27□□□□□ -2.37
RTR1YER139C SDH6Q3E785 79 aa0.27□□□□□ -2.37
RTR1YER139C NOP10Q6Q547 58 aaPredicted RBP0.27□□□□□ -2.37
RTR1YER139C DNF3Q12674 1656 aa0.27□□□□□ -2.37
RTR1YER139C RIM15P43565 1770 aa0.27□□□□□ -2.37
RTR1YER139C TAO3P40468 2376 aa0.26□□□□□ -2.37
RTR1YER139C SWM2P40342 146 aa0.26□□□□□ -2.37
RTR1YER139C CWP2P43497 92 aa0.26□□□□□ -2.37
RTR1YER139C YDR381C-AQ3E6R5 114 aa0.26□□□□□ -2.37
RTR1YER139C YRF1-2P40105 1681 aa0.26□□□□□ -2.37
RTR1YER139C XRN1P22147 1528 aaKnown RBP0.25□□□□□ -2.37
RTR1YER139C YFR009W-AP0C5M9 85 aa0.25□□□□□ -2.37
RTR1YER139C YPR108W-AQ3E7B3 70 aa0.25□□□□□ -2.37
RTR1YER139C YRF1-1P0CX20 1796 aa0.24□□□□□ -2.37
RTR1YER139C YRF1-5P0CX21 1796 aa0.24□□□□□ -2.37
RTR1YER139C YRF1-8P0CX22 1796 aa0.24□□□□□ -2.37
RTR1YER139C TY1B-BLQ12490 1755 aa0.24□□□□□ -2.37
RTR1YER139C YIL156W-BQ2V2P4 73 aa0.24□□□□□ -2.37
RTR1YER139C YDR119W-AQ2V2P9 66 aa0.24□□□□□ -2.37
RTR1YER139C SNF2P22082 1703 aa0.24□□□□□ -2.37
RTR1YER139C QCR9P22289 66 aa0.23□□□□□ -2.37
RTR1YER139C YPR145C-AQ2V2P0 78 aa0.23□□□□□ -2.37
RTR1YER139C YGR121W-AQ3E816 71 aa0.23□□□□□ -2.37
RTR1YER139C ESC1Q03661 1658 aaKnown RBP0.22□□□□□ -2.37
RTR1YER139C LSM2P38203 95 aaKnown RBP0.22□□□□□ -2.37
RTR1YER139C SGF11Q03067 99 aa0.22□□□□□ -2.37
RTR1YER139C ATP17Q06405 101 aa0.22□□□□□ -2.37
RTR1YER139C YIL134C-AQ45U18 67 aa0.22□□□□□ -2.37
RTR1YER139C YHR213W-AQ8TGT4 77 aa0.22□□□□□ -2.37
RTR1YER139C MYO1P08964 1928 aa0.22□□□□□ -2.37
RTR1YER139C YDL022C-AP0C5L6 82 aa0.21□□□□□ -2.38
RTR1YER139C SPI1P40092 148 aa0.21□□□□□ -2.38
RTR1YER139C YGR035W-AQ45U48 73 aa0.21□□□□□ -2.38
RTR1YER139C MMS1Q06211 1407 aa0.21□□□□□ -2.38
RTR1YER139C YBL044WP38194 122 aa0.2□□□□□ -2.38
RTR1YER139C FAS2P19097 1887 aaKnown RBP0.19□□□□□ -2.38
RTR1YER139C PAU7P39545 55 aa0.19□□□□□ -2.38
RTR1YER139C YOR011W-AQ3E807 68 aa0.19□□□□□ -2.38
RTR1YER139C TY1B-BRQ12193 1756 aa0.19□□□□□ -2.38
RTR1YER139C NUP159P40477 1460 aa0.18□□□□□ -2.38
RTR1YER139C YFL041W-AQ3E817 63 aa0.18□□□□□ -2.38
RTR1YER139C HUB1Q6Q546 73 aa0.17□□□□□ -2.38
RTR1YER139C UFD4P33202 1483 aa0.16□□□□□ -2.38
RTR1YER139C BCK1Q01389 1478 aa0.16□□□□□ -2.38
RTR1YER139C SMC4Q12267 1418 aa0.16□□□□□ -2.38
RTR1YER139C SEN1Q00416 2231 aaKnown RBP0.16□□□□□ -2.38
RTR1YER139C PAI3P01094 68 aa0.16□□□□□ -2.38
RTR1YER139C RPS27AP35997 82 aaKnown RBP0.16□□□□□ -2.38
RTR1YER139C RPS29AP41057 56 aaKnown RBP0.16□□□□□ -2.38
RTR1YER139C OLI1P61829 76 aa0.16□□□□□ -2.38
RTR1YER139C YBR200W-AQ3E755 54 aa0.16□□□□□ -2.38
RTR1YER139C YDR246W-AQ3E763 66 aa0.16□□□□□ -2.38
RTR1YER139C YDR182W-AQ3E796 67 aa0.16□□□□□ -2.38
RTR1YER139C YKL018C-AQ3E7A7 99 aa0.16□□□□□ -2.38
RTR1YER139C YOR394C-AQ8TGJ0 55 aa0.16□□□□□ -2.38
RTR1YER139C TY1B-PR2P0C2J0 1756 aa0.15□□□□□ -2.39
RTR1YER139C SIN3P22579 1536 aa0.15□□□□□ -2.39
RTR1YER139C TIM12P32830 109 aa0.15□□□□□ -2.39
RTR1YER139C SSS1P35179 80 aa0.15□□□□□ -2.39
RTR1YER139C YLR146W-AQ2V2P1 62 aa0.15□□□□□ -2.39
RTR1YER139C YCR108CQ3E819 63 aa0.15□□□□□ -2.39
RTR1YER139C MOT1P32333 1867 aa0.15□□□□□ -2.39
RTR1YER139C HKR1P41809 1802 aa0.15□□□□□ -2.39
Retrieved 100 of 5,963 RNA–protein pairs in 22.5 ms