RNA–Protein interactions for RNA: YDR312W

SSF2, Transcript of Protein required for ribosomal large subunit maturation, yeast

Gene SSF2, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSF2	YDR312W	SFT2	P38166	215 aa		1.04	□□□□□ -2.24
SSF2	YDR312W	LSM2	P38203	95 aa	Known RBP	1.04	□□□□□ -2.24
SSF2	YDR312W	SCP1	Q08873	200 aa		1.04	□□□□□ -2.24
SSF2	YDR312W	POC4	Q12245	148 aa	Predicted RBP	1.04	□□□□□ -2.24
SSF2	YDR312W	KTI11	Q3E840	82 aa		1.04	□□□□□ -2.24
SSF2	YDR312W	YPR010C-A	A5Z2X5	72 aa		1.03	□□□□□ -2.24
SSF2	YDR312W	LSM1	P47017	172 aa	Known RBP	1.03	□□□□□ -2.24
SSF2	YDR312W	SPG1	P50088	95 aa		1.03	□□□□□ -2.24
SSF2	YDR312W	YGR039W	P53225	103 aa		1.03	□□□□□ -2.24
SSF2	YDR312W	YOR072W	Q08486	104 aa		1.03	□□□□□ -2.24
SSF2	YDR312W	YER188C-A	P0C0V2	99 aa		1.02	□□□□□ -2.25
SSF2	YDR312W	NHP6A	P11632	93 aa	Known RBP	1.02	□□□□□ -2.25
SSF2	YDR312W	RPL14A	P36105	138 aa	Known RBP	1.02	□□□□□ -2.25
SSF2	YDR312W	RPL14B	P38754	138 aa	Known RBP	1.02	□□□□□ -2.25
SSF2	YDR312W	SPI1	P40092	148 aa		1.02	□□□□□ -2.25
SSF2	YDR312W	LSM8	P47093	109 aa	Known RBP	1.02	□□□□□ -2.25
SSF2	YDR312W	BRP1	P53194	125 aa		1.02	□□□□□ -2.25
SSF2	YDR312W	SNA2	P56508	79 aa		1.02	□□□□□ -2.25
SSF2	YDR312W	ERI1	P62651	68 aa	Known RBP	1.02	□□□□□ -2.25
SSF2	YDR312W	SPC24	Q04477	213 aa		1.02	□□□□□ -2.25
SSF2	YDR312W	YLR194C	Q05777	254 aa		1.02	□□□□□ -2.25
SSF2	YDR312W	YPR153W	Q06537	140 aa		1.02	□□□□□ -2.25
SSF2	YDR312W	RPL37B	P51402	88 aa	Known RBP	1.01	□□□□□ -2.25
SSF2	YDR312W	YCL001W-A	P87012	153 aa		1.01	□□□□□ -2.25
SSF2	YDR312W	COF1	Q03048	143 aa	Known RBP	1.01	□□□□□ -2.25
SSF2	YDR312W	IRC21	Q04772	201 aa		1.01	□□□□□ -2.25
SSF2	YDR312W	UBC4	P15731	148 aa		1	□□□□□ -2.25
SSF2	YDR312W	HHO1	P53551	258 aa		1	□□□□□ -2.25
SSF2	YDR312W	YBR200W-A	Q3E755	54 aa		1	□□□□□ -2.25
SSF2	YDR312W	YMR122W-A	Q3E842	84 aa		1	□□□□□ -2.25
SSF2	YDR312W	MRP17	P28778	131 aa		0.99	□□□□□ -2.25
SSF2	YDR312W	YAL064W	P39711	94 aa		0.99	□□□□□ -2.25
SSF2	YDR312W	MIC27	P50945	234 aa		0.99	□□□□□ -2.25
SSF2	YDR312W	SEN15	Q04675	128 aa		0.99	□□□□□ -2.25
SSF2	YDR312W	NAT5	Q08689	176 aa		0.99	□□□□□ -2.25
SSF2	YDR312W	ATP14	Q12349	124 aa		0.99	□□□□□ -2.25
SSF2	YDR312W	UBC5	P15732	148 aa		0.98	□□□□□ -2.25
SSF2	YDR312W	FUN14	P18411	198 aa		0.98	□□□□□ -2.25
SSF2	YDR312W	MRPL44	P19956	98 aa		0.98	□□□□□ -2.25
SSF2	YDR312W	PMP3	P87284	55 aa		0.98	□□□□□ -2.25
SSF2	YDR312W	RPS22A	P0C0W1	130 aa	Known RBP	0.97	□□□□□ -2.25
SSF2	YDR312W	YOL013W-A	P0C272	63 aa	Predicted RBP	0.97	□□□□□ -2.25
SSF2	YDR312W	SWM2	P40342	146 aa		0.97	□□□□□ -2.25
SSF2	YDR312W	RPC10	P40422	70 aa		0.97	□□□□□ -2.25
SSF2	YDR312W	YMR090W	Q04304	227 aa	Known RBP	0.97	□□□□□ -2.25
SSF2	YDR312W	YOR385W	Q08909	290 aa		0.97	□□□□□ -2.25
SSF2	YDR312W	RPS22B	Q3E7Y3	130 aa	Known RBP	0.97	□□□□□ -2.25
SSF2	YDR312W	COA2	Q3E823	68 aa		0.97	□□□□□ -2.25
SSF2	YDR312W	KSH1	Q8TGJ3	72 aa		0.97	□□□□□ -2.25
SSF2	YDR312W	YHR213W-B	Q8TGK1	99 aa		0.97	□□□□□ -2.25
SSF2	YDR312W	MED11	Q99278	115 aa		0.97	□□□□□ -2.25
SSF2	YDR312W	ECM12	O13529	151 aa		0.96	□□□□□ -2.26
SSF2	YDR312W	SEC59	P20048	519 aa		0.96	□□□□□ -2.26
SSF2	YDR312W	FYV5	P25585	152 aa		0.96	□□□□□ -2.26
SSF2	YDR312W	YMR141C	P40211	102 aa		0.96	□□□□□ -2.26
SSF2	YDR312W	RPS29A	P41057	56 aa	Known RBP	0.96	□□□□□ -2.26
SSF2	YDR312W	YNL122C	P53921	115 aa	Predicted RBP	0.96	□□□□□ -2.26
SSF2	YDR312W	PCC1	Q3E833	88 aa		0.96	□□□□□ -2.26
SSF2	YDR312W	YJL009W	P47078	108 aa		0.96	□□□□□ -2.26
SSF2	YDR312W	SOM1	Q05676	74 aa		0.96	□□□□□ -2.26
SSF2	YDR312W	HAP3	P13434	144 aa		0.95	□□□□□ -2.26
SSF2	YDR312W	HHY1	P39982	102 aa		0.95	□□□□□ -2.26
SSF2	YDR312W	YIL163C	P40448	117 aa		0.95	□□□□□ -2.26
SSF2	YDR312W	YGL041C-B	Q3E750	60 aa		0.95	□□□□□ -2.26
SSF2	YDR312W	COA6	Q3E846	104 aa		0.95	□□□□□ -2.26
SSF2	YDR312W	YGL014C-A	P0C5N1	53 aa		0.94	□□□□□ -2.26
SSF2	YDR312W	MRP49	P32388	137 aa		0.94	□□□□□ -2.26
SSF2	YDR312W	MGR2	Q02889	113 aa		0.94	□□□□□ -2.26
SSF2	YDR312W	YMR122C	Q03879	124 aa		0.94	□□□□□ -2.26
SSF2	YDR312W	YLR342W-A	Q3E810	57 aa		0.94	□□□□□ -2.26
SSF2	YDR312W	SUS1	Q6WNK7	96 aa		0.94	□□□□□ -2.26
SSF2	YDR312W	YHR213W-A	Q8TGT4	77 aa		0.94	□□□□□ -2.26
SSF2	YDR312W	PFY1	P07274	126 aa		0.93	□□□□□ -2.26
SSF2	YDR312W	UTP11	P34247	250 aa	Predicted RBP	0.93	□□□□□ -2.26
SSF2	YDR312W	YHR140W	P38842	239 aa		0.93	□□□□□ -2.26
SSF2	YDR312W	YHR173C	P38864	112 aa		0.93	□□□□□ -2.26
SSF2	YDR312W	HSP10	P38910	106 aa		0.93	□□□□□ -2.26
SSF2	YDR312W	CWP2	P43497	92 aa		0.93	□□□□□ -2.26
SSF2	YDR312W	ELC1	Q03071	99 aa		0.93	□□□□□ -2.26
SSF2	YDR312W	DAD1	Q12248	94 aa		0.93	□□□□□ -2.26
SSF2	YDR312W	RPS29B	P41058	56 aa	Known RBP	0.92	□□□□□ -2.26
SSF2	YDR312W	YMR082C	Q04276	118 aa		0.92	□□□□□ -2.26
SSF2	YDR312W	ENV10	Q99382	181 aa		0.92	□□□□□ -2.26
SSF2	YDR312W	MRPL11	P36521	249 aa	Predicted RBP	0.91	□□□□□ -2.26
SSF2	YDR312W	YEA6	P39953	335 aa		0.91	□□□□□ -2.26
SSF2	YDR312W	MVB12	P42939	101 aa		0.91	□□□□□ -2.26
SSF2	YDR312W	YLR118C	Q12354	227 aa		0.91	□□□□□ -2.26
SSF2	YDR312W	MRPL31	P14063	131 aa	Predicted RBP	0.9	□□□□□ -2.27
SSF2	YDR312W	QCR9	P22289	66 aa		0.9	□□□□□ -2.27
SSF2	YDR312W	QCR10	P37299	77 aa		0.9	□□□□□ -2.27
SSF2	YDR312W	YLR296W	Q05898	108 aa		0.9	□□□□□ -2.27
SSF2	YDR312W	CNL1	Q06333	122 aa		0.9	□□□□□ -2.27
SSF2	YDR312W	YMR175W-A	Q3E766	64 aa		0.9	□□□□□ -2.27
SSF2	YDR312W	Q0032	Q9ZZX7	96 aa		0.9	□□□□□ -2.27
SSF2	YDR312W	YCR050C	P25630	102 aa		0.89	□□□□□ -2.27
SSF2	YDR312W	TVP18	Q04767	167 aa		0.89	□□□□□ -2.27
SSF2	YDR312W	YLR146W-A	Q2V2P1	62 aa		0.89	□□□□□ -2.27
SSF2	YDR312W	YAL065C	O13511	128 aa		0.88	□□□□□ -2.27
SSF2	YDR312W	FCF2	Q12035	217 aa	Predicted RBP	0.88	□□□□□ -2.27
SSF2	YDR312W	YNL277W-A	Q3E7Z0	62 aa		0.88	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 26.5 ms