RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 USP46P62068 366 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 TAF10Q12962 218 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 ZNF268Q14587 947 aaPredicted RBP13.73□□□□□ -0.21
CLK3-224ENST00000568605 ANO6Q4KMQ2 910 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 FKBP15Q5T1M5 1219 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 CDKAL1Q5VV42 579 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 VITQ6UXI7 678 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 BMP8AQ7Z5Y6 402 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 TMEM150AQ86TG1 271 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 MFSD6LQ8IWD5 586 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 PIAS4Q8N2W9 510 aaPredicted RBP13.73□□□□□ -0.21
CLK3-224ENST00000568605 RBBP8NLQ8NC74 664 aaPredicted RBP13.73□□□□□ -0.21
CLK3-224ENST00000568605 BPIFB1Q8TDL5 484 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 SHDQ96IW2 340 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 SMOQ99835 787 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 BPIFA3Q9BQP9 254 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 SMOC2Q9H3U7 446 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 UBE2TQ9NPD8 197 aaPredicted RBP13.73□□□□□ -0.21
CLK3-224ENST00000568605 ARHGEF3Q9NR81 526 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 TLR8Q9NR97 1041 aaKnown RBP13.73□□□□□ -0.21
CLK3-224ENST00000568605 TSPAN16Q9UKR8 245 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 MYOFQ9NZM1 2061 aa13.73□□□□□ -0.21
CLK3-224ENST00000568605 SMTNL1A8MU46 457 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 NRG2O14511 850 aaPredicted RBP13.72□□□□□ -0.21
CLK3-224ENST00000568605 ZNF263O14978 683 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 ABL1P00519 1130 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 SETSIPP0DME0 302 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 CDK11BP21127 795 aaKnown RBP13.72□□□□□ -0.21
CLK3-224ENST00000568605 GDI1P31150 447 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 PLCB2Q00722 1185 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 BST2Q10589 180 aaKnown RBP13.72□□□□□ -0.21
CLK3-224ENST00000568605 GRM2Q14416 872 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 GOLGA7BQ2TAP0 167 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 ARHGAP29Q52LW3 1261 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 MIIPQ5JXC2 388 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 TXNDC8Q6A555 127 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 PHLDB3Q6NSJ2 640 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 CC2D1AQ6P1N0 951 aaPredicted RBP13.72□□□□□ -0.21
CLK3-224ENST00000568605 AOPEPQ8N6M6 819 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 ANKRD52Q8NB46 1076 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 ZMIZ2Q8NF64 920 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 ST13P5Q8NFI4 369 aaPredicted RBP13.72□□□□□ -0.21
CLK3-224ENST00000568605 PBXIP1Q96AQ6 731 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 ASIC4Q96FT7 647 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 RPP25Q9BUL9 199 aaKnown RBP13.72□□□□□ -0.21
CLK3-224ENST00000568605 SLC46A2Q9BY10 475 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 C11orf16Q9NQ32 467 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 TDP1Q9NUW8 608 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 THG1LQ9NWX6 298 aaKnown RBP13.72□□□□□ -0.21
CLK3-224ENST00000568605 TAB2Q9NYJ8 693 aa13.72□□□□□ -0.21
CLK3-224ENST00000568605 SYCE3A1L190 88 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 FAM92AA1XBS5 289 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 BECN2A8MW95 431 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 TNFRSF10BO14763 440 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 XPO1O14980 1071 aaKnown RBP13.71□□□□□ -0.21
CLK3-224ENST00000568605 MED7O43513 233 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 BEST1O76090 585 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 PRAMEF12O95522 483 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 SLC9A1P19634 815 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 ACO1P21399 889 aaKnown RBP13.71□□□□□ -0.21
CLK3-224ENST00000568605 PON1P27169 355 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 VIPR2P41587 438 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 PSEN1P49768 467 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 TUBP50607 506 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 TPM4P67936 248 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 GPC5P78333 572 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 FCHO2Q0JRZ9 810 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 KRT31Q15323 416 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 TADA2BQ86TJ2 420 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 DDX42Q86XP3 938 aaKnown RBP eCLIP13.71□□□□□ -0.21
CLK3-224ENST00000568605 SIX5Q8N196 739 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 FBXL6Q8N531 539 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 CSGALNACT1Q8TDX6 532 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 KAT5Q92993 513 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 MSANTD3Q96H12 275 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 KREMEN1Q96MU8 473 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 LRFN3Q9BTN0 628 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 NACA2Q9H009 215 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 FANCLQ9NW38 375 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 IL37Q9NZH6 218 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 CA14Q9ULX7 337 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 DAAM1Q9Y4D1 1078 aa13.71□□□□□ -0.21
CLK3-224ENST00000568605 ZNF840PA6NDX5 716 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 M0QYV0 167 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 O00370 1275 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 CHADO15335 359 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 CAVIN2O95810 425 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 HDCP19113 662 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 GNA15P30679 374 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 ZNF165P49910 485 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 ZNF132P52740 706 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 PRKCQQ04759 706 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 GOLGA8FQ08AF8 430 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 GOLGA8DPQ0D2H9 430 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 MLF2Q15773 248 aaPredicted RBP13.7□□□□□ -0.22
CLK3-224ENST00000568605 ARHGAP44Q17R89 818 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 HECTD3Q5T447 861 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 C1orf228Q6PIY5 440 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 POTEHQ6S545 545 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 LCLAT1Q6UWP7 414 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms