RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB5	YLR260W	SWD3	P38123	315 aa		2.67	□□□□□ -1.98
LCB5	YLR260W	YER135C	P40082	130 aa		2.67	□□□□□ -1.98
LCB5	YLR260W	SRL1	Q08673	210 aa		2.67	□□□□□ -1.98
LCB5	YLR260W	ATP20	Q12233	115 aa		2.67	□□□□□ -1.98
LCB5	YLR260W	KSH1	Q8TGJ3	72 aa		2.67	□□□□□ -1.98
LCB5	YLR260W	YCL021W-A	Q96VH3	125 aa		2.67	□□□□□ -1.98
LCB5	YLR260W	RAD6	P06104	172 aa		2.67	□□□□□ -1.98
LCB5	YLR260W	YCR050C	P25630	102 aa		2.67	□□□□□ -1.98
LCB5	YLR260W	SUS1	Q6WNK7	96 aa		2.67	□□□□□ -1.98
LCB5	YLR260W	PAI3	P01094	68 aa		2.66	□□□□□ -1.98
LCB5	YLR260W	MRPL11	P36521	249 aa	Predicted RBP	2.66	□□□□□ -1.98
LCB5	YLR260W	NSA2	P40078	261 aa	Known RBP	2.66	□□□□□ -1.98
LCB5	YLR260W	ARC15	P40518	154 aa	RIP-Chip data	2.66	□□□□□ -1.98	not detected
LCB5	YLR260W	IGD1	P43598	195 aa		2.66	□□□□□ -1.98
LCB5	YLR260W	DSK2	P48510	373 aa		2.66	□□□□□ -1.98
LCB5	YLR260W	YGR164W	P53291	111 aa		2.66	□□□□□ -1.98
LCB5	YLR260W	YML122C	Q03207	126 aa		2.66	□□□□□ -1.98
LCB5	YLR260W	PRM3	Q08931	133 aa		2.66	□□□□□ -1.98
LCB5	YLR260W	ATG41	Q12048	136 aa		2.66	□□□□□ -1.98
LCB5	YLR260W	YIL134C-A	Q45U18	67 aa		2.66	□□□□□ -1.98
LCB5	YLR260W	MIG3	P39943	394 aa		2.65	□□□□□ -1.98
LCB5	YLR260W	MIX17	Q03667	156 aa		2.65	□□□□□ -1.98
LCB5	YLR260W	CUE4	Q04201	117 aa	Predicted RBP	2.65	□□□□□ -1.98
LCB5	YLR260W	FIT1	Q04433	528 aa		2.65	□□□□□ -1.98
LCB5	YLR260W	PBA1	Q05778	276 aa		2.65	□□□□□ -1.98
LCB5	YLR260W	YLR281C	Q05863	155 aa		2.65	□□□□□ -1.98
LCB5	YLR260W	PCC1	Q3E833	88 aa		2.65	□□□□□ -1.98
LCB5	YLR260W	YAL067W-A	Q8TGK6	75 aa		2.65	□□□□□ -1.98
LCB5	YLR260W	POR1	P04840	283 aa	Known RBP	2.65	□□□□□ -1.99
LCB5	YLR260W	YHR125W	P38831	101 aa		2.65	□□□□□ -1.99
LCB5	YLR260W	MRPS8	Q03799	155 aa		2.65	□□□□□ -1.99
LCB5	YLR260W	ECM12	O13529	151 aa		2.64	□□□□□ -1.99
LCB5	YLR260W	YGL010W	P25338	174 aa		2.64	□□□□□ -1.99
LCB5	YLR260W	RRT13	P40042	185 aa		2.64	□□□□□ -1.99
LCB5	YLR260W	CAX4	P53223	239 aa		2.64	□□□□□ -1.99
LCB5	YLR260W	RRT7	Q07829	113 aa		2.64	□□□□□ -1.99
LCB5	YLR260W	ATG40	Q99325	256 aa		2.64	□□□□□ -1.99
LCB5	YLR260W	YAL064W	P39711	94 aa		2.64	□□□□□ -1.99
LCB5	YLR260W	SPG1	P50088	95 aa		2.64	□□□□□ -1.99
LCB5	YLR260W	NAT5	Q08689	176 aa		2.64	□□□□□ -1.99
LCB5	YLR260W	YNR034W-A	Q3E841	98 aa		2.64	□□□□□ -1.99
LCB5	YLR260W	RPB7	P34087	171 aa		2.63	□□□□□ -1.99
LCB5	YLR260W	RRT1	P38192	103 aa		2.63	□□□□□ -1.99
LCB5	YLR260W	SMD3	P43321	101 aa	Known RBP	2.63	□□□□□ -1.99
LCB5	YLR260W	THG1	P53215	237 aa	Known RBP	2.63	□□□□□ -1.99
LCB5	YLR260W	GPI19	Q04082	140 aa		2.63	□□□□□ -1.99
LCB5	YLR260W	MIC10	Q96VH5	97 aa		2.63	□□□□□ -1.99
LCB5	YLR260W	MDN1	Q12019	4910 aa	Known RBP	2.62	□□□□□ -1.99
LCB5	YLR260W	YCR043C	P25361	127 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	CYB5	P40312	120 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	MPC3	P53311	146 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	HAL1	Q01766	294 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	YMR090W	Q04304	227 aa	Known RBP	2.62	□□□□□ -1.99
LCB5	YLR260W	POC4	Q12245	148 aa	Predicted RBP	2.62	□□□□□ -1.99
LCB5	YLR260W	YPR145C-A	Q2V2P0	78 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	RRT15	Q3E811	62 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	YGR035W-A	Q45U48	73 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	UBC4	P15731	148 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	YKR045C	P36138	183 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	MRPS16	Q02608	121 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	YMR295C	Q03559	197 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	LIP1	Q03579	150 aa		2.62	□□□□□ -1.99
LCB5	YLR260W	YCR085W	P25650	117 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	UTR5	P32630	166 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	YBL059W	P34224	193 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	MID2	P36027	376 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	EMC5	P40540	141 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	MSL1	P40567	111 aa	Predicted RBP	2.61	□□□□□ -1.99
LCB5	YLR260W	KNH1	P50112	268 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	YOL085C	Q99345	113 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	YHR032W-A	P0C5N6	59 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	ATG8	P38182	117 aa	RIP-Chip data	2.61	□□□□□ -1.99	not detected
LCB5	YLR260W	YHL042W	P38729	150 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	YFR035C	P43608	114 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	CYT2	Q00873	224 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	YOR385W	Q08909	290 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	YPR108W-A	Q3E7B3	70 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	COA6	Q3E846	104 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	SCS22	Q6Q595	175 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	YLR365W	Q7LIF2	110 aa		2.61	□□□□□ -1.99
LCB5	YLR260W	YHR138C	P38841	114 aa	Predicted RBP	2.6	□□□□□ -1.99
LCB5	YLR260W	YNL217W	P40152	326 aa		2.6	□□□□□ -1.99
LCB5	YLR260W	SWM2	P40342	146 aa		2.6	□□□□□ -1.99
LCB5	YLR260W	HUG1	Q6Q5K6	68 aa		2.6	□□□□□ -1.99
LCB5	YLR260W	RPS25B	P0C0T4	108 aa	Known RBP	2.59	□□□□□ -1.99
LCB5	YLR260W	ROX3	P25046	220 aa		2.59	□□□□□ -1.99
LCB5	YLR260W	MRPL27	P36526	146 aa	Predicted RBP	2.59	□□□□□ -1.99
LCB5	YLR260W	RPS25A	Q3E792	108 aa	Predicted RBP	2.59	□□□□□ -1.99
LCB5	YLR260W	YNL198C	P40166	100 aa		2.59	□□□□□ -2
LCB5	YLR260W	VPS55	P47111	140 aa		2.59	□□□□□ -2
LCB5	YLR260W	IRC23	Q08416	157 aa		2.59	□□□□□ -2
LCB5	YLR260W	YOR381W-A	Q3E804	55 aa		2.59	□□□□□ -2
LCB5	YLR260W	YHR212W-A	P0CX91	67 aa		2.58	□□□□□ -2
LCB5	YLR260W	YKL044W	P36092	106 aa		2.58	□□□□□ -2
LCB5	YLR260W	YHL018W	P38744	120 aa	Predicted RBP	2.58	□□□□□ -2
LCB5	YLR260W	PAU23	Q07987	124 aa		2.58	□□□□□ -2
LCB5	YLR260W	PAU17	Q12370	124 aa		2.58	□□□□□ -2
LCB5	YLR260W	FZF1	P32805	299 aa		2.57	□□□□□ -2
LCB5	YLR260W	SNF11	P38956	169 aa		2.57	□□□□□ -2
LCB5	YLR260W	HOR7	Q05827	59 aa		2.57	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 17.7 ms