RNA–Protein interactions for RNA: YLR223C

IFH1, Transcript of Coactivator, regulates transcription of ribosomal protein (RP) genes, yeast

Gene IFH1, Length 3,258 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
IFH1	YLR223C	ATX1	P38636	73 aa		0.71	□□□□□ -2.3
IFH1	YLR223C	YHL042W	P38729	150 aa		0.71	□□□□□ -2.3
IFH1	YLR223C	YEL028W	P39989	153 aa		0.71	□□□□□ -2.3
IFH1	YLR223C	SPI1	P40092	148 aa		0.71	□□□□□ -2.3
IFH1	YLR223C	PAU5	P43575	122 aa		0.71	□□□□□ -2.3
IFH1	YLR223C	KNH1	P50112	268 aa		0.71	□□□□□ -2.3
IFH1	YLR223C	MET31	Q03081	177 aa		0.71	□□□□□ -2.3
IFH1	YLR223C	YMR252C	Q04814	134 aa		0.71	□□□□□ -2.3
IFH1	YLR223C	MSA1	Q08471	629 aa		0.71	□□□□□ -2.3
IFH1	YLR223C	HSP12	P22943	109 aa	Known RBP	0.7	□□□□□ -2.3
IFH1	YLR223C	YER181C	P40097	107 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	MPM1	P40364	252 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	YJL027C	P47063	138 aa	Predicted RBP	0.7	□□□□□ -2.3
IFH1	YLR223C	YOR186W	Q08560	144 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	SMT3	Q12306	101 aa	Known RBP	0.7	□□□□□ -2.3
IFH1	YLR223C	YDR246W-A	Q3E763	66 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	SCS22	Q6Q595	175 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	MIC10	Q96VH5	97 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	YAL065C	O13511	128 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	SEC11	P15367	167 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	YGL010W	P25338	174 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	TVP23	P38962	199 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	YER134C	P40081	178 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	EMC5	P40540	141 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	SKI6	P46948	246 aa	Predicted RBP	0.7	□□□□□ -2.3
IFH1	YLR223C	YOL118C	Q08259	102 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	FYV12	Q08559	129 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	YOR343C	Q12484	108 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	YDR381C-A	Q3E6R5	114 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	YLR363W-A	Q3E747	85 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	YLR365W	Q7LIF2	110 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	BET1	P22804	142 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	LSM2	P38203	95 aa	Known RBP	0.7	□□□□□ -2.3
IFH1	YLR223C	YER187W	P40102	141 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	CWP2	P43497	92 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	LPP1	Q04396	274 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	CSI2	Q08054	341 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	COA3	Q3E7B2	85 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	FIG2	P25653	1609 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	HKR1	P41809	1802 aa		0.7	□□□□□ -2.3
IFH1	YLR223C	YAR023C	D6VPM8	179 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	MSA2	P36157	363 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YBR292C	P38357	123 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	CTR2	P38865	189 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	BRP1	P53194	125 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YNR064C	P53750	290 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	GRX5	Q02784	150 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	LIP1	Q03579	150 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YML079W	Q03629	201 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	GPI19	Q04082	140 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YLR162W	Q06235	118 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	NIP7	Q08962	181 aa	Known RBP	0.69	□□□□□ -2.3
IFH1	YLR223C	YPL229W	Q99395	206 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YHR214C-D	P0CX93	97 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	ROX3	P25046	220 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	CIS3	P47001	227 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	EAF6	P47128	113 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	SPG3	Q04398	127 aa	Predicted RBP	0.69	□□□□□ -2.3
IFH1	YLR223C	LSM6	Q06406	86 aa	Known RBP	0.69	□□□□□ -2.3
IFH1	YLR223C	EMC6	Q12431	108 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YOR314W	Q12506	109 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YKL065W-A	Q2V2P2	73 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YGR121W-A	Q3E816	71 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	FLO1	P32768	1537 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	MDM35	O60200	86 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	RPL40A	P0CH08	128 aa	Known RBP	0.69	□□□□□ -2.3
IFH1	YLR223C	RPL40B	P0CH09	128 aa	Known RBP	0.69	□□□□□ -2.3
IFH1	YLR223C	URA5	P13298	226 aa	Known RBP	0.69	□□□□□ -2.3
IFH1	YLR223C	FYV5	P25585	152 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	RSM18	P40033	138 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	DCV1	P43595	202 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	ATP19	P81451	68 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YMR295C	Q03559	197 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	MRPS8	Q03799	155 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	ICY1	Q04329	127 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	ATG41	Q12048	136 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YOR020W-A	Q3E824	90 aa		0.69	□□□□□ -2.3
IFH1	YLR223C	YLR156W	P0CE96	114 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	YLR159W	P0CE97	114 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	YLR161W	P0CE98	114 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	NHP2	P32495	156 aa	Predicted RBP	0.68	□□□□□ -2.3
IFH1	YLR223C	YKL044W	P36092	106 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	YIR020C	P40575	100 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	YDR274C	P87283	123 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	PIR1	Q03178	341 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	RPS22B	Q3E7Y3	130 aa	Known RBP	0.68	□□□□□ -2.3
IFH1	YLR223C	YHR139C-A	O13536	103 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	QCR10	P37299	77 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	VTC1	P40046	129 aa	RIP-Chip data	0.68	□□□□□ -2.3	not detected
IFH1	YLR223C	ARC15	P40518	154 aa	RIP-Chip data	0.68	□□□□□ -2.3	not detected
IFH1	YLR223C	YFL019C	P43576	117 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	ICS3	P47034	131 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	MZM1	Q03429	123 aa	Predicted RBP	0.68	□□□□□ -2.3
IFH1	YLR223C	HPA2	Q06592	156 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	IRC23	Q08416	157 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	YOR105W	Q08504	108 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	YDR182W-A	Q3E796	67 aa		0.68	□□□□□ -2.3
IFH1	YLR223C	SEC7	P11075	2009 aa	Known RBP	0.67	□□□□□ -2.3
IFH1	YLR223C	TIM9	O74700	87 aa		0.67	□□□□□ -2.3
IFH1	YLR223C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.67	□□□□□ -2.3	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 37.1 ms