RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W ANT1Q06497 328 aa3.31□□□□□ -1.88
SSH4YKL124W YDR029WQ12111 104 aa3.31□□□□□ -1.88
SSH4YKL124W FUN14P18411 198 aa3.3□□□□□ -1.88
SSH4YKL124W AGA1P32323 725 aa3.3□□□□□ -1.88
SSH4YKL124W NRG2P38082 220 aa3.3□□□□□ -1.88
SSH4YKL124W EDC2P40023 145 aaPredicted RBP3.3□□□□□ -1.88
SSH4YKL124W YNL200CP40165 246 aaKnown RBP3.3□□□□□ -1.88
SSH4YKL124W YGL193CP53097 103 aa3.3□□□□□ -1.88
SSH4YKL124W MRPS8Q03799 155 aa3.3□□□□□ -1.88
SSH4YKL124W YMR244WQ04018 355 aa3.3□□□□□ -1.88
SSH4YKL124W YOR011W-AQ3E807 68 aa3.3□□□□□ -1.88
SSH4YKL124W TDA8Q6B2U8 126 aa3.3□□□□□ -1.88
SSH4YKL124W SSS1P35179 80 aa3.3□□□□□ -1.88
SSH4YKL124W YBR292CP38357 123 aa3.3□□□□□ -1.88
SSH4YKL124W ASP1P38986 381 aaPredicted RBP3.3□□□□□ -1.88
SSH4YKL124W SMD1Q02260 146 aaPredicted RBP3.3□□□□□ -1.88
SSH4YKL124W YMR007WQ03675 126 aa3.3□□□□□ -1.88
SSH4YKL124W INO4P13902 151 aa3.29□□□□□ -1.88
SSH4YKL124W CDC43P18898 376 aa3.29□□□□□ -1.88
SSH4YKL124W SMP1P38128 452 aa3.29□□□□□ -1.88
SSH4YKL124W GCV3P39726 170 aaPredicted RBP3.29□□□□□ -1.88
SSH4YKL124W SNN1P48232 102 aa3.29□□□□□ -1.88
SSH4YKL124W AVO2Q04749 426 aa3.29□□□□□ -1.88
SSH4YKL124W RDS3Q06835 107 aaPredicted RBP3.29□□□□□ -1.88
SSH4YKL124W PRM7Q12459 698 aa3.29□□□□□ -1.88
SSH4YKL124W YPR145C-AQ2V2P0 78 aa3.29□□□□□ -1.88
SSH4YKL124W RAD6P06104 172 aa3.28□□□□□ -1.88
SSH4YKL124W HSP12P22943 109 aaKnown RBP3.28□□□□□ -1.88
SSH4YKL124W YGR164WP53291 111 aa3.28□□□□□ -1.88
SSH4YKL124W CCW12Q12127 133 aa3.28□□□□□ -1.88
SSH4YKL124W YFL019CP43576 117 aa3.27□□□□□ -1.89
SSH4YKL124W YBL008W-AQ3E821 79 aa3.27□□□□□ -1.89
SSH4YKL124W KSH1Q8TGJ3 72 aa3.27□□□□□ -1.89
SSH4YKL124W RPS11AP0CX47 156 aaKnown RBP3.27□□□□□ -1.89
SSH4YKL124W RPS11BP0CX48 156 aaKnown RBP3.27□□□□□ -1.89
SSH4YKL124W MRPL11P36521 249 aaPredicted RBP3.27□□□□□ -1.89
SSH4YKL124W FYV4P38783 130 aaPredicted RBP3.27□□□□□ -1.89
SSH4YKL124W MIG3P39943 394 aa3.27□□□□□ -1.89
SSH4YKL124W YER135CP40082 130 aa3.27□□□□□ -1.89
SSH4YKL124W SMD3P43321 101 aaKnown RBP3.27□□□□□ -1.89
SSH4YKL124W YFL065CP43539 102 aa3.27□□□□□ -1.89
SSH4YKL124W YGR025WP53216 100 aa3.27□□□□□ -1.89
SSH4YKL124W FIT2Q08906 153 aa3.27□□□□□ -1.89
SSH4YKL124W YPR203WQ08994 102 aa3.27□□□□□ -1.89
SSH4YKL124W YPR170W-BP0C5R9 85 aa3.26□□□□□ -1.89
SSH4YKL124W DDR48P18899 430 aaKnown RBP3.26□□□□□ -1.89
SSH4YKL124W YCR050CP25630 102 aa3.26□□□□□ -1.89
SSH4YKL124W YHR022CP38763 256 aa3.26□□□□□ -1.89
SSH4YKL124W CWP2P43497 92 aa3.26□□□□□ -1.89
SSH4YKL124W VAM10Q08474 114 aa3.26□□□□□ -1.89
SSH4YKL124W ECM12O13529 151 aa3.25□□□□□ -1.89
SSH4YKL124W YGL010WP25338 174 aa3.25□□□□□ -1.89
SSH4YKL124W SPI1P40092 148 aa3.25□□□□□ -1.89
SSH4YKL124W DSK2P48510 373 aa3.25□□□□□ -1.89
SSH4YKL124W YOL014WQ08110 124 aa3.25□□□□□ -1.89
SSH4YKL124W YLR112WQ12130 139 aa3.25□□□□□ -1.89
SSH4YKL124W SDS23P53172 527 aa3.24□□□□□ -1.89
SSH4YKL124W SGF11Q03067 99 aa3.24□□□□□ -1.89
SSH4YKL124W YML100W-AQ8TGT0 57 aa3.24□□□□□ -1.89
SSH4YKL124W TRP1P00912 224 aa3.24□□□□□ -1.89
SSH4YKL124W PAI3P01094 68 aa3.24□□□□□ -1.89
SSH4YKL124W YHR173CP38864 112 aa3.24□□□□□ -1.89
SSH4YKL124W HAL1Q01766 294 aa3.24□□□□□ -1.89
SSH4YKL124W YOR015WQ12169 119 aa3.24□□□□□ -1.89
SSH4YKL124W TIM22Q12328 207 aa3.24□□□□□ -1.89
SSH4YKL124W COX19Q3E731 98 aa3.24□□□□□ -1.89
SSH4YKL124W YAL063C-AQ3E791 96 aa3.24□□□□□ -1.89
SSH4YKL124W YAL064WP39711 94 aa3.23□□□□□ -1.89
SSH4YKL124W VTC1P40046 129 aaRIP-Chip data3.23□□□□□ -1.89not detected
SSH4YKL124W EMC5P40540 141 aa3.23□□□□□ -1.89
SSH4YKL124W ADD37Q03233 198 aa3.23□□□□□ -1.89
SSH4YKL124W FYV12Q08559 129 aa3.23□□□□□ -1.89
SSH4YKL124W UBC4P15731 148 aa3.22□□□□□ -1.89
SSH4YKL124W ATP15P21306 62 aa3.22□□□□□ -1.89
SSH4YKL124W COX14P39103 70 aa3.22□□□□□ -1.89
SSH4YKL124W MSL1P40567 111 aaPredicted RBP3.22□□□□□ -1.89
SSH4YKL124W PAU4P53427 120 aa3.22□□□□□ -1.89
SSH4YKL124W MSA2P36157 363 aa3.22□□□□□ -1.89
SSH4YKL124W CYB5P40312 120 aa3.22□□□□□ -1.89
SSH4YKL124W MIC10Q96VH5 97 aa3.22□□□□□ -1.89
SSH4YKL124W RPS22AP0C0W1 130 aaKnown RBP3.21□□□□□ -1.9
SSH4YKL124W PAU1P0CE88 120 aa3.21□□□□□ -1.9
SSH4YKL124W PAU14P0CE89 120 aa3.21□□□□□ -1.9
SSH4YKL124W PAU6P0CE90 120 aa3.21□□□□□ -1.9
SSH4YKL124W PAU18P0CE91 120 aa3.21□□□□□ -1.9
SSH4YKL124W PAU8P0CE92 120 aa3.21□□□□□ -1.9
SSH4YKL124W PAU11P0CE93 120 aa3.21□□□□□ -1.9
SSH4YKL124W YCR001WP25347 104 aa3.21□□□□□ -1.9
SSH4YKL124W PAU13P38725 120 aa3.21□□□□□ -1.9
SSH4YKL124W PAU10Q03050 120 aa3.21□□□□□ -1.9
SSH4YKL124W PAU20Q08322 120 aa3.21□□□□□ -1.9
SSH4YKL124W PAU9Q3E770 120 aa3.21□□□□□ -1.9
SSH4YKL124W YLR342W-AQ3E810 57 aa3.21□□□□□ -1.9
SSH4YKL124W ADH3P07246 375 aaKnown RBP3.2□□□□□ -1.9
SSH4YKL124W BET1P22804 142 aa3.2□□□□□ -1.9
SSH4YKL124W TOM7P53507 60 aa3.2□□□□□ -1.9
SSH4YKL124W GPI19Q04082 140 aa3.2□□□□□ -1.9
SSH4YKL124W RRT15Q3E811 62 aa3.2□□□□□ -1.9
SSH4YKL124W YLR156WP0CE96 114 aa3.19□□□□□ -1.9
SSH4YKL124W YLR159WP0CE97 114 aa3.19□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 17.7 ms