RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	BET1	P22804	142 aa		3.04	□□□□□ -1.92
CAF16	YFL028C	AUA1	P32450	94 aa		3.04	□□□□□ -1.92
CAF16	YFL028C	YHR022C	P38763	256 aa		3.04	□□□□□ -1.92
CAF16	YFL028C	SPI1	P40092	148 aa		3.04	□□□□□ -1.92
CAF16	YFL028C	POG1	P40473	351 aa		3.04	□□□□□ -1.92
CAF16	YFL028C	MRPS8	Q03799	155 aa		3.04	□□□□□ -1.92
CAF16	YFL028C	GIM5	Q04493	163 aa		3.04	□□□□□ -1.92
CAF16	YFL028C	CCW12	Q12127	133 aa		3.04	□□□□□ -1.92
CAF16	YFL028C	CMC2	Q3E7A4	109 aa		3.04	□□□□□ -1.92
CAF16	YFL028C	SRP21	P32342	167 aa		3.03	□□□□□ -1.92
CAF16	YFL028C	NRG2	P38082	220 aa		3.03	□□□□□ -1.92
CAF16	YFL028C	AME1	P38313	324 aa		3.03	□□□□□ -1.92
CAF16	YFL028C	YNL184C	P53876	108 aa		3.03	□□□□□ -1.92
CAF16	YFL028C	DAD4	P69851	72 aa		3.03	□□□□□ -1.92
CAF16	YFL028C	ATP19	P81451	68 aa		3.03	□□□□□ -1.92
CAF16	YFL028C	NAT3	Q06504	195 aa		3.03	□□□□□ -1.92
CAF16	YFL028C	CNB1	P25296	175 aa		3.02	□□□□□ -1.93
CAF16	YFL028C	FZF1	P32805	299 aa		3.02	□□□□□ -1.93
CAF16	YFL028C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	3.02	□□□□□ -1.93	not detected
CAF16	YFL028C	SRP14	P38985	146 aa		3.02	□□□□□ -1.93
CAF16	YFL028C	YFR035C	P43608	114 aa		3.02	□□□□□ -1.93
CAF16	YFL028C	COX12	Q01519	83 aa		3.02	□□□□□ -1.93
CAF16	YFL028C	TSC3	Q3E790	80 aa		3.02	□□□□□ -1.93
CAF16	YFL028C	YLR342W-A	Q3E810	57 aa		3.02	□□□□□ -1.93
CAF16	YFL028C	MBF1	O14467	151 aa	Known RBP	3.01	□□□□□ -1.93
CAF16	YFL028C	TIR1	P10863	254 aa		3.01	□□□□□ -1.93
CAF16	YFL028C	DAD3	P69850	94 aa		3.01	□□□□□ -1.93
CAF16	YFL028C	YOR105W	Q08504	108 aa		3.01	□□□□□ -1.93
CAF16	YFL028C	DAD1	Q12248	94 aa		3.01	□□□□□ -1.93
CAF16	YFL028C	YLR118C	Q12354	227 aa		3.01	□□□□□ -1.93
CAF16	YFL028C	FMP49	A0A023PZB3	126 aa		3	□□□□□ -1.93
CAF16	YFL028C	VAR1	P02381	398 aa		3	□□□□□ -1.93
CAF16	YFL028C	RPS11A	P0CX47	156 aa	Known RBP	3	□□□□□ -1.93
CAF16	YFL028C	RPS11B	P0CX48	156 aa	Known RBP	3	□□□□□ -1.93
CAF16	YFL028C	PGD1	P40356	397 aa		3	□□□□□ -1.93
CAF16	YFL028C	YCL001W-B	Q96VH2	84 aa		3	□□□□□ -1.93
CAF16	YFL028C	RPL2A	P0CX45	254 aa	Known RBP	2.99	□□□□□ -1.93
CAF16	YFL028C	RPL2B	P0CX46	254 aa	Known RBP	2.99	□□□□□ -1.93
CAF16	YFL028C	ATG8	P38182	117 aa	RIP-Chip data	2.99	□□□□□ -1.93	not detected
CAF16	YFL028C	VMA21	P41806	77 aa		2.99	□□□□□ -1.93
CAF16	YFL028C	EMC6	Q12431	108 aa		2.99	□□□□□ -1.93
CAF16	YFL028C	NHP6A	P11632	93 aa	Known RBP	2.98	□□□□□ -1.93
CAF16	YFL028C	MRPL31	P14063	131 aa	Predicted RBP	2.98	□□□□□ -1.93
CAF16	YFL028C	YGL010W	P25338	174 aa		2.98	□□□□□ -1.93
CAF16	YFL028C	HSP10	P38910	106 aa		2.98	□□□□□ -1.93
CAF16	YFL028C	PAU15	P40585	124 aa		2.98	□□□□□ -1.93
CAF16	YFL028C	MOG1	P47123	218 aa		2.98	□□□□□ -1.93
CAF16	YFL028C	DAN1	P47178	298 aa		2.98	□□□□□ -1.93
CAF16	YFL028C	APS2	Q00381	147 aa		2.98	□□□□□ -1.93
CAF16	YFL028C	ATP15	P21306	62 aa		2.97	□□□□□ -1.93
CAF16	YFL028C	YCR001W	P25347	104 aa		2.97	□□□□□ -1.93
CAF16	YFL028C	PAM17	P36147	197 aa		2.97	□□□□□ -1.93
CAF16	YFL028C	RPB11	P38902	120 aa		2.97	□□□□□ -1.93
CAF16	YFL028C	YGR017W	P53210	297 aa		2.97	□□□□□ -1.93
CAF16	YFL028C	HHO1	P53551	258 aa		2.97	□□□□□ -1.93
CAF16	YFL028C	UPS3	Q04006	179 aa		2.97	□□□□□ -1.93
CAF16	YFL028C	YBR200W-A	Q3E755	54 aa		2.97	□□□□□ -1.93
CAF16	YFL028C	HMRA1	P0CY11	126 aa		2.96	□□□□□ -1.94
CAF16	YFL028C	YKR041W	P36134	250 aa		2.96	□□□□□ -1.94
CAF16	YFL028C	RPL33B	P41056	107 aa	Known RBP	2.96	□□□□□ -1.94
CAF16	YFL028C	NSE4	P43124	402 aa		2.96	□□□□□ -1.94
CAF16	YFL028C	PAU5	P43575	122 aa		2.96	□□□□□ -1.94
CAF16	YFL028C	BRP1	P53194	125 aa		2.96	□□□□□ -1.94
CAF16	YFL028C	RGM1	Q00453	211 aa		2.96	□□□□□ -1.94
CAF16	YFL028C	DGA1	Q08650	418 aa		2.96	□□□□□ -1.94
CAF16	YFL028C	YDL085C-A	Q3E7B7	68 aa	Known RBP	2.96	□□□□□ -1.94
CAF16	YFL028C	YNR034W-A	Q3E841	98 aa		2.96	□□□□□ -1.94
CAF16	YFL028C	YBR013C	P38215	129 aa		2.95	□□□□□ -1.94
CAF16	YFL028C	YER076C	P40049	302 aa		2.95	□□□□□ -1.94
CAF16	YFL028C	THG1	P53215	237 aa	Known RBP	2.95	□□□□□ -1.94
CAF16	YFL028C	YDR366C	P87287	132 aa		2.95	□□□□□ -1.94
CAF16	YFL028C	SGF11	Q03067	99 aa		2.95	□□□□□ -1.94
CAF16	YFL028C	VAM10	Q08474	114 aa		2.95	□□□□□ -1.94
CAF16	YFL028C	PAU7	P39545	55 aa		2.94	□□□□□ -1.94
CAF16	YFL028C	AIM34	Q03673	198 aa		2.94	□□□□□ -1.94
CAF16	YFL028C	GPI19	Q04082	140 aa		2.94	□□□□□ -1.94
CAF16	YFL028C	YCR075W-A	Q3E830	75 aa		2.94	□□□□□ -1.94
CAF16	YFL028C	PAU19	P0CE85	124 aa		2.93	□□□□□ -1.94
CAF16	YFL028C	PAU21	P0CE86	164 aa		2.93	□□□□□ -1.94
CAF16	YFL028C	PAU22	P0CE87	164 aa		2.93	□□□□□ -1.94
CAF16	YFL028C	YCR023C	P25351	611 aa		2.93	□□□□□ -1.94
CAF16	YFL028C	PAU3	P25610	124 aa		2.93	□□□□□ -1.94
CAF16	YFL028C	YHR140W	P38842	239 aa		2.93	□□□□□ -1.94
CAF16	YFL028C	YNL217W	P40152	326 aa		2.93	□□□□□ -1.94
CAF16	YFL028C	YLR042C	Q07990	161 aa		2.93	□□□□□ -1.94
CAF16	YFL028C	ZEO1	Q08245	113 aa		2.93	□□□□□ -1.94
CAF16	YFL028C	POR1	P04840	283 aa	Known RBP	2.92	□□□□□ -1.94
CAF16	YFL028C	GTT1	P40582	234 aa		2.92	□□□□□ -1.94
CAF16	YFL028C	SKI6	P46948	246 aa	Predicted RBP	2.92	□□□□□ -1.94
CAF16	YFL028C	YNR077C	P53758	84 aa		2.92	□□□□□ -1.94
CAF16	YFL028C	YOL014W	Q08110	124 aa		2.91	□□□□□ -1.94
CAF16	YFL028C	FSF1	Q12029	327 aa	Known RBP	2.91	□□□□□ -1.94
CAF16	YFL028C	YGR240C-A	Q3E786	66 aa		2.91	□□□□□ -1.94
CAF16	YFL028C	RPS22B	Q3E7Y3	130 aa	Known RBP	2.91	□□□□□ -1.94
CAF16	YFL028C	TVP18	Q04767	167 aa		2.9	□□□□□ -1.95
CAF16	YFL028C	SHH4	Q06236	168 aa		2.9	□□□□□ -1.95
CAF16	YFL028C	YML100W-A	Q8TGT0	57 aa		2.9	□□□□□ -1.95
CAF16	YFL028C	CYT2	Q00873	224 aa		2.89	□□□□□ -1.95
CAF16	YFL028C	WIP1	Q2V2P8	89 aa		2.89	□□□□□ -1.95
CAF16	YFL028C	YPR014C	Q6B0W2	109 aa		2.89	□□□□□ -1.95

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms