RNA–Protein interactions for RNA: YDL084W

SUB2, Transcript of Component of the TREX complex required for nuclear mRNA export, yeast

Gene SUB2, Length 1,341 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SUB2	YDL084W	RPL26A	P05743	127 aa	Known RBP	4.55	□□□□□ -1.68
SUB2	YDL084W	YOL118C	Q08259	102 aa		4.55	□□□□□ -1.68
SUB2	YDL084W	YOR268C	Q08734	132 aa		4.55	□□□□□ -1.68
SUB2	YDL084W	YOR343C	Q12484	108 aa		4.55	□□□□□ -1.68
SUB2	YDL084W	HHF1	P02309	103 aa	Known RBP	4.54	□□□□□ -1.68
SUB2	YDL084W	RPL23A	P0CX41	137 aa	Known RBP	4.54	□□□□□ -1.68
SUB2	YDL084W	RPL23B	P0CX42	137 aa	Known RBP	4.54	□□□□□ -1.68
SUB2	YDL084W	ROX3	P25046	220 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	FPR2	P32472	135 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	YBL059W	P34224	193 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	QCR10	P37299	77 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	YSY6	P38374	65 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	VTC1	P40046	129 aa	RIP-Chip data	4.54	□□□□□ -1.68	not detected
SUB2	YDL084W	PAU12	P53343	120 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	ATP19	P81451	68 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	EMI1	Q04406	187 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	FSH2	Q05015	223 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	YLR122C	Q12312	125 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	PCL9	Q12477	304 aa		4.54	□□□□□ -1.68
SUB2	YDL084W	MRP10	O75012	95 aa		4.53	□□□□□ -1.68
SUB2	YDL084W	RPL42A	P0CX27	106 aa	Known RBP	4.53	□□□□□ -1.68
SUB2	YDL084W	RPL42B	P0CX28	106 aa	Known RBP	4.53	□□□□□ -1.68
SUB2	YDL084W	FLO5	P38894	1075 aa		4.53	□□□□□ -1.68
SUB2	YDL084W	BRP1	P53194	125 aa		4.53	□□□□□ -1.68
SUB2	YDL084W	LIP1	Q03579	150 aa		4.53	□□□□□ -1.68
SUB2	YDL084W	MIM1	Q08176	113 aa		4.53	□□□□□ -1.68
SUB2	YDL084W	FYV12	Q08559	129 aa		4.53	□□□□□ -1.68
SUB2	YDL084W	YPR011C	Q12251	326 aa		4.53	□□□□□ -1.68
SUB2	YDL084W	CRC1	Q12289	327 aa		4.53	□□□□□ -1.68
SUB2	YDL084W	RPS14A	P06367	137 aa	Known RBP	4.52	□□□□□ -1.69
SUB2	YDL084W	TIM12	P32830	109 aa		4.52	□□□□□ -1.69
SUB2	YDL084W	ASK1	P35734	292 aa		4.52	□□□□□ -1.69
SUB2	YDL084W	MTC6	P38849	526 aa		4.52	□□□□□ -1.69
SUB2	YDL084W	RPS14B	P39516	138 aa	Known RBP	4.52	□□□□□ -1.69
SUB2	YDL084W	MRPS8	Q03799	155 aa		4.52	□□□□□ -1.69
SUB2	YDL084W	YPL278C	Q08990	100 aa		4.52	□□□□□ -1.69
SUB2	YDL084W	YAR023C	D6VPM8	179 aa		4.51	□□□□□ -1.69
SUB2	YDL084W	PAU24	P38155	120 aa		4.51	□□□□□ -1.69
SUB2	YDL084W	YPL261C	Q08976	102 aa		4.51	□□□□□ -1.69
SUB2	YDL084W	PPT2	Q12036	173 aa		4.51	□□□□□ -1.69
SUB2	YDL084W	YOR314W	Q12506	109 aa		4.51	□□□□□ -1.69
SUB2	YDL084W	YAL065C	O13511	128 aa		4.5	□□□□□ -1.69
SUB2	YDL084W	YLR156W	P0CE96	114 aa		4.5	□□□□□ -1.69
SUB2	YDL084W	YLR159W	P0CE97	114 aa		4.5	□□□□□ -1.69
SUB2	YDL084W	YLR161W	P0CE98	114 aa		4.5	□□□□□ -1.69
SUB2	YDL084W	ATP15	P21306	62 aa		4.5	□□□□□ -1.69
SUB2	YDL084W	ECO1	P43605	281 aa		4.5	□□□□□ -1.69
SUB2	YDL084W	IMP2	P46972	177 aa		4.5	□□□□□ -1.69
SUB2	YDL084W	IRC23	Q08416	157 aa		4.5	□□□□□ -1.69
SUB2	YDL084W	TMC1	Q08422	150 aa	Predicted RBP	4.5	□□□□□ -1.69
SUB2	YDL084W	AGA1	P32323	725 aa		4.49	□□□□□ -1.69
SUB2	YDL084W	YHR173C	P38864	112 aa		4.49	□□□□□ -1.69
SUB2	YDL084W	SPI1	P40092	148 aa		4.49	□□□□□ -1.69
SUB2	YDL084W	LST8	P41318	303 aa		4.49	□□□□□ -1.69
SUB2	YDL084W	PIR3	Q03180	325 aa		4.49	□□□□□ -1.69
SUB2	YDL084W	TIM22	Q12328	207 aa		4.49	□□□□□ -1.69
SUB2	YDL084W	YOR381W-A	Q3E804	55 aa		4.49	□□□□□ -1.69
SUB2	YDL084W	PIS1	P06197	220 aa	Known RBP	4.48	□□□□□ -1.69
SUB2	YDL084W	CTR2	P38865	189 aa		4.48	□□□□□ -1.69
SUB2	YDL084W	PTH1	P38876	190 aa	Known RBP	4.48	□□□□□ -1.69
SUB2	YDL084W	YEL073C	P39974	107 aa		4.48	□□□□□ -1.69
SUB2	YDL084W	YIL014C-A	Q02598	104 aa		4.48	□□□□□ -1.69
SUB2	YDL084W	TRS23	Q03784	219 aa		4.48	□□□□□ -1.69
SUB2	YDL084W	SOM1	Q05676	74 aa		4.48	□□□□□ -1.69
SUB2	YDL084W	YKL065W-A	Q2V2P2	73 aa		4.48	□□□□□ -1.69
SUB2	YDL084W	PFY1	P07274	126 aa		4.47	□□□□□ -1.69
SUB2	YDL084W	RPS22A	P0C0W1	130 aa	Known RBP	4.47	□□□□□ -1.69
SUB2	YDL084W	YCR025C	P25352	136 aa		4.47	□□□□□ -1.69
SUB2	YDL084W	ERG2	P32352	222 aa		4.47	□□□□□ -1.69
SUB2	YDL084W	AIM19	P40502	157 aa		4.47	□□□□□ -1.69
SUB2	YDL084W	URM1	P40554	99 aa	Predicted RBP	4.47	□□□□□ -1.69
SUB2	YDL084W	ATP20	Q12233	115 aa		4.47	□□□□□ -1.69
SUB2	YDL084W	YER145C-A	A0A023PYF4	145 aa		4.46	□□□□□ -1.69
SUB2	YDL084W	UTH1	P36135	365 aa		4.46	□□□□□ -1.69
SUB2	YDL084W	MRPL27	P36526	146 aa	Predicted RBP	4.46	□□□□□ -1.69
SUB2	YDL084W	AIM4	P38305	123 aa	Predicted RBP	4.46	□□□□□ -1.69
SUB2	YDL084W	TVP23	P38962	199 aa		4.46	□□□□□ -1.69
SUB2	YDL084W	IRC19	Q07843	230 aa		4.46	□□□□□ -1.69
SUB2	YDL084W	YMR030W-A	Q3E760	96 aa		4.46	□□□□□ -1.69
SUB2	YDL084W	YKL018C-A	Q3E7A7	99 aa		4.46	□□□□□ -1.69
SUB2	YDL084W	HKR1	P41809	1802 aa		4.46	□□□□□ -1.7
SUB2	YDL084W	MSA2	P36157	363 aa		4.46	□□□□□ -1.7
SUB2	YDL084W	COX14	P39103	70 aa		4.46	□□□□□ -1.7
SUB2	YDL084W	MPC3	P53311	146 aa		4.46	□□□□□ -1.7
SUB2	YDL084W	RGM1	Q00453	211 aa		4.46	□□□□□ -1.7
SUB2	YDL084W	OST5	Q92316	86 aa		4.46	□□□□□ -1.7
SUB2	YDL084W	AGA2	P32781	87 aa		4.45	□□□□□ -1.7
SUB2	YDL084W	DSE2	P38844	325 aa		4.45	□□□□□ -1.7
SUB2	YDL084W	YFL015C	P43578	164 aa		4.45	□□□□□ -1.7
SUB2	YDL084W	YLR162W	Q06235	118 aa		4.45	□□□□□ -1.7
SUB2	YDL084W	YDR246W-A	Q3E763	66 aa		4.45	□□□□□ -1.7
SUB2	YDL084W	RRT1	P38192	103 aa		4.44	□□□□□ -1.7
SUB2	YDL084W	ARC15	P40518	154 aa	RIP-Chip data	4.44	□□□□□ -1.7	not detected
SUB2	YDL084W	STT4	P37297	1900 aa		4.43	□□□□□ -1.7
SUB2	YDL084W	QCR9	P22289	66 aa		4.43	□□□□□ -1.7
SUB2	YDL084W	SRL1	Q08673	210 aa		4.43	□□□□□ -1.7
SUB2	YDL084W	YGR121W-A	Q3E816	71 aa		4.43	□□□□□ -1.7
SUB2	YDL084W	YER188C-A	P0C0V2	99 aa		4.42	□□□□□ -1.7
SUB2	YDL084W	ERI1	P62651	68 aa	Known RBP	4.42	□□□□□ -1.7
SUB2	YDL084W	BSC1	Q12140	328 aa		4.42	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 39.4 ms