RNA–Protein interactions for RNA: YAR007C

RFA1, Transcript of Subunit of heterotrimeric Replication Protein A (RPA), yeast

Gene RFA1, Length 1,866 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RFA1	YAR007C	YNL190W	P53872	204 aa		4.3	□□□□□ -1.72
RFA1	YAR007C	YHR139C-A	O13536	103 aa		4.29	□□□□□ -1.72
RFA1	YAR007C	VMA11	P32842	164 aa		4.29	□□□□□ -1.72
RFA1	YAR007C	YOL160W	Q08321	113 aa		4.29	□□□□□ -1.72
RFA1	YAR007C	YOR008C-A	Q3E7B9	74 aa		4.29	□□□□□ -1.72
RFA1	YAR007C	UTH1	P36135	365 aa		4.28	□□□□□ -1.72
RFA1	YAR007C	MRPL24	P36525	258 aa	Predicted RBP	4.28	□□□□□ -1.72
RFA1	YAR007C	ADH5	P38113	351 aa	Known RBP	4.28	□□□□□ -1.72
RFA1	YAR007C	CTR2	P38865	189 aa		4.28	□□□□□ -1.72
RFA1	YAR007C	COX12	Q01519	83 aa		4.28	□□□□□ -1.72
RFA1	YAR007C	RPS23A	P0CX29	145 aa	Known RBP	4.28	□□□□□ -1.72
RFA1	YAR007C	RPS23B	P0CX30	145 aa		4.28	□□□□□ -1.72
RFA1	YAR007C	YIL059C	P40520	121 aa		4.28	□□□□□ -1.72
RFA1	YAR007C	URM1	P40554	99 aa	Predicted RBP	4.28	□□□□□ -1.72
RFA1	YAR007C	LCB3	P47013	409 aa		4.28	□□□□□ -1.72
RFA1	YAR007C	KNH1	P50112	268 aa		4.28	□□□□□ -1.72
RFA1	YAR007C	COF1	Q03048	143 aa	Known RBP	4.28	□□□□□ -1.72
RFA1	YAR007C	RAD6	P06104	172 aa		4.27	□□□□□ -1.73
RFA1	YAR007C	INO2	P26798	304 aa		4.27	□□□□□ -1.73
RFA1	YAR007C	DUO1	P53168	247 aa	Known RBP	4.27	□□□□□ -1.73
RFA1	YAR007C	YGR025W	P53216	100 aa		4.27	□□□□□ -1.73
RFA1	YAR007C	MRPS12	P53732	153 aa		4.27	□□□□□ -1.73
RFA1	YAR007C	HFA1	P32874	2273 aa		4.27	□□□□□ -1.73
RFA1	YAR007C	MRPL38	P35996	138 aa	Predicted RBP	4.26	□□□□□ -1.73
RFA1	YAR007C	CAX4	P53223	239 aa		4.26	□□□□□ -1.73
RFA1	YAR007C	PBI2	P0CT04	75 aa	Known RBP	4.26	□□□□□ -1.73
RFA1	YAR007C	RPL18A	P0CX49	186 aa	Known RBP	4.26	□□□□□ -1.73
RFA1	YAR007C	RPL18B	P0CX50	186 aa	Known RBP	4.26	□□□□□ -1.73
RFA1	YAR007C	SMP1	P38128	452 aa		4.26	□□□□□ -1.73
RFA1	YAR007C	AIM19	P40502	157 aa		4.26	□□□□□ -1.73
RFA1	YAR007C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	not detected
RFA1	YAR007C	NRM1	P53718	249 aa		4.26	□□□□□ -1.73
RFA1	YAR007C	PBP4	Q07362	185 aa	Known RBP	4.26	□□□□□ -1.73
RFA1	YAR007C	YDR029W	Q12111	104 aa		4.26	□□□□□ -1.73
RFA1	YAR007C	YDR381C-A	Q3E6R5	114 aa		4.26	□□□□□ -1.73
RFA1	YAR007C	YER039C-A	P0CD97	72 aa		4.25	□□□□□ -1.73
RFA1	YAR007C	RPL42A	P0CX27	106 aa	Known RBP	4.25	□□□□□ -1.73
RFA1	YAR007C	RPL42B	P0CX28	106 aa	Known RBP	4.25	□□□□□ -1.73
RFA1	YAR007C	ECM12	O13529	151 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	LDB16	P25587	256 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	YHL042W	P38729	150 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	WWM1	P43582	211 aa	Known RBP	4.24	□□□□□ -1.73
RFA1	YAR007C	DCV1	P43595	202 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	YGR045C	P53229	120 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	YDL009C	Q12210	107 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	YOL085C	Q99345	113 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	CCW14	O13547	238 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	YER121W	P40076	114 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	SED1	Q01589	338 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	PBA1	Q05778	276 aa		4.24	□□□□□ -1.73
RFA1	YAR007C	RPL16A	P26784	199 aa	Known RBP	4.23	□□□□□ -1.73
RFA1	YAR007C	YJR146W	P47174	117 aa		4.23	□□□□□ -1.73
RFA1	YAR007C	YGR219W	P53307	113 aa		4.23	□□□□□ -1.73
RFA1	YAR007C	BPH1	P25356	2167 aa		4.23	□□□□□ -1.73
RFA1	YAR007C	DAP1	Q12091	152 aa		4.22	□□□□□ -1.73
RFA1	YAR007C	TRP1	P00912	224 aa		4.22	□□□□□ -1.73
RFA1	YAR007C	RPL15A	P05748	204 aa	Known RBP	4.22	□□□□□ -1.73
RFA1	YAR007C	UBC5	P15732	148 aa		4.22	□□□□□ -1.73
RFA1	YAR007C	PEX17	P40155	199 aa		4.22	□□□□□ -1.73
RFA1	YAR007C	POR2	P40478	281 aa		4.22	□□□□□ -1.73
RFA1	YAR007C	YBR200W-A	Q3E755	54 aa		4.22	□□□□□ -1.73
RFA1	YAR007C	YPL038W-A	Q3E7B4	63 aa		4.22	□□□□□ -1.73
RFA1	YAR007C	STF1	P01098	86 aa		4.21	□□□□□ -1.74
RFA1	YAR007C	YDR034W-B	Q6Q5X2	51 aa		4.21	□□□□□ -1.74
RFA1	YAR007C	HUR1	P45820	110 aa		4.2	□□□□□ -1.74
RFA1	YAR007C	SBH2	P52871	88 aa		4.2	□□□□□ -1.74
RFA1	YAR007C	RPL2A	P0CX45	254 aa	Known RBP	4.2	□□□□□ -1.74
RFA1	YAR007C	RPL2B	P0CX46	254 aa	Known RBP	4.2	□□□□□ -1.74
RFA1	YAR007C	TOM6	P33448	61 aa		4.2	□□□□□ -1.74
RFA1	YAR007C	SHU1	P38751	150 aa		4.2	□□□□□ -1.74
RFA1	YAR007C	YHR022C	P38763	256 aa		4.2	□□□□□ -1.74
RFA1	YAR007C	MPC2	P38857	129 aa		4.2	□□□□□ -1.74
RFA1	YAR007C	YNL046W	P53956	172 aa		4.2	□□□□□ -1.74
RFA1	YAR007C	YCL048W-A	Q2V2Q2	79 aa		4.2	□□□□□ -1.74
RFA1	YAR007C	YHL018W	P38744	120 aa	Predicted RBP	4.19	□□□□□ -1.74
RFA1	YAR007C	KEG1	P43614	200 aa		4.19	□□□□□ -1.74
RFA1	YAR007C	MSA2	P36157	363 aa		4.18	□□□□□ -1.74
RFA1	YAR007C	YGL088W	P53151	121 aa		4.18	□□□□□ -1.74
RFA1	YAR007C	SHH4	Q06236	168 aa		4.18	□□□□□ -1.74
RFA1	YAR007C	EMC6	Q12431	108 aa		4.18	□□□□□ -1.74
RFA1	YAR007C	IES6	P32617	166 aa		4.18	□□□□□ -1.74
RFA1	YAR007C	YBR209W	P38311	105 aa		4.18	□□□□□ -1.74
RFA1	YAR007C	KRE9	P39005	276 aa		4.18	□□□□□ -1.74
RFA1	YAR007C	SIM1	P40472	476 aa		4.18	□□□□□ -1.74
RFA1	YAR007C	YLR042C	Q07990	161 aa		4.18	□□□□□ -1.74
RFA1	YAR007C	RPL16B	P26785	198 aa	Known RBP	4.17	□□□□□ -1.74
RFA1	YAR007C	YHL037C	P38733	133 aa		4.17	□□□□□ -1.74
RFA1	YAR007C	SVP26	P38869	228 aa		4.17	□□□□□ -1.74
RFA1	YAR007C	RRT13	P40042	185 aa		4.17	□□□□□ -1.74
RFA1	YAR007C	PPT2	Q12036	173 aa		4.17	□□□□□ -1.74
RFA1	YAR007C	YOR034C-A	Q3E735	80 aa		4.17	□□□□□ -1.74
RFA1	YAR007C	IRA1	P18963	3092 aa		4.16	□□□□□ -1.74
RFA1	YAR007C	YCR050C	P25630	102 aa		4.16	□□□□□ -1.74
RFA1	YAR007C	YSY6	P38374	65 aa		4.16	□□□□□ -1.74
RFA1	YAR007C	QCR8	P08525	94 aa		4.15	□□□□□ -1.74
RFA1	YAR007C	YEL008W	P40001	126 aa		4.15	□□□□□ -1.74
RFA1	YAR007C	YNL194C	P40169	301 aa		4.15	□□□□□ -1.74
RFA1	YAR007C	UBC11	P52492	156 aa		4.15	□□□□□ -1.74
RFA1	YAR007C	CCW12	Q12127	133 aa		4.15	□□□□□ -1.74
RFA1	YAR007C	YML122C	Q03207	126 aa		4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 41.9 ms