RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeastyeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB4YOR171C NAT5Q08689 176 aa2.37□□□□□ -2.03
LCB4YOR171C UBR1P19812 1950 aa2.37□□□□□ -2.03
LCB4YOR171C TY2B-LR1P0C2J3 1770 aa2.37□□□□□ -2.03
LCB4YOR171C TY2B-FP0CX63 1770 aa2.37□□□□□ -2.03
LCB4YOR171C TY2B-GR2P0CX64 1770 aa2.37□□□□□ -2.03
LCB4YOR171C TY2B-CP25384 1770 aa2.37□□□□□ -2.03
LCB4YOR171C TY2B-DR2Q03494 1770 aa2.37□□□□□ -2.03
LCB4YOR171C TY2B-DR3Q07791 1770 aaKnown RBP2.37□□□□□ -2.03
LCB4YOR171C TY2B-OR1Q12113 1770 aa2.37□□□□□ -2.03
LCB4YOR171C TY2B-DR1Q12472 1770 aa2.37□□□□□ -2.03
LCB4YOR171C TY2B-BQ12491 1770 aa2.37□□□□□ -2.03
LCB4YOR171C TY2B-OR2Q12501 1770 aa2.37□□□□□ -2.03
LCB4YOR171C ATG2P53855 1592 aa2.37□□□□□ -2.03
LCB4YOR171C YHR213WP0CI67 198 aa2.37□□□□□ -2.03
LCB4YOR171C ECM34P38728 170 aa2.37□□□□□ -2.03
LCB4YOR171C IGO1P53897 168 aa2.37□□□□□ -2.03
LCB4YOR171C YDL241WQ07738 123 aa2.37□□□□□ -2.03
LCB4YOR171C DAD1Q12248 94 aa2.37□□□□□ -2.03
LCB4YOR171C YIL134C-AQ45U18 67 aa2.37□□□□□ -2.03
LCB4YOR171C UFD4P33202 1483 aa2.36□□□□□ -2.03
LCB4YOR171C PAU21P0CE86 164 aa2.36□□□□□ -2.03
LCB4YOR171C PAU22P0CE87 164 aa2.36□□□□□ -2.03
LCB4YOR171C HSP26P15992 214 aaKnown RBP RIP-Chip data2.36□□□□□ -2.03not detected
LCB4YOR171C UTR5P32630 166 aa2.36□□□□□ -2.03
LCB4YOR171C GIS2P53849 153 aaKnown RBP RIP-Chip data2.36□□□□□ -2.03not detected
LCB4YOR171C PAU23Q07987 124 aa2.36□□□□□ -2.03
LCB4YOR171C PAU17Q12370 124 aa2.36□□□□□ -2.03
LCB4YOR171C YDR119W-AQ2V2P9 66 aa2.36□□□□□ -2.03
LCB4YOR171C RPS25AQ3E792 108 aaPredicted RBP2.36□□□□□ -2.03
LCB4YOR171C YNR034W-AQ3E841 98 aa2.36□□□□□ -2.03
LCB4YOR171C BPT1P14772 1559 aa2.36□□□□□ -2.03
LCB4YOR171C FAS2P19097 1887 aaKnown RBP2.35□□□□□ -2.03
LCB4YOR171C TOM6P33448 61 aa2.35□□□□□ -2.03
LCB4YOR171C ATX1P38636 73 aa2.35□□□□□ -2.03
LCB4YOR171C PAU12P53343 120 aa2.35□□□□□ -2.03
LCB4YOR171C POP3P53833 195 aaPredicted RBP2.35□□□□□ -2.03
LCB4YOR171C AVO2Q04749 426 aa2.35□□□□□ -2.03
LCB4YOR171C IRC19Q07843 230 aa2.35□□□□□ -2.03
LCB4YOR171C YPL261CQ08976 102 aa2.35□□□□□ -2.03
LCB4YOR171C MSB2P32334 1306 aa2.35□□□□□ -2.03
LCB4YOR171C YHR032W-AP0C5N6 59 aa2.35□□□□□ -2.03
LCB4YOR171C PAU2P32612 120 aa2.35□□□□□ -2.03
LCB4YOR171C IGD1P43598 195 aa2.35□□□□□ -2.03
LCB4YOR171C GRX5Q02784 150 aa2.35□□□□□ -2.03
LCB4YOR171C IRC23Q08416 157 aa2.35□□□□□ -2.03
LCB4YOR171C YOR015WQ12169 119 aa2.35□□□□□ -2.03
LCB4YOR171C PCC1Q3E833 88 aa2.35□□□□□ -2.03
LCB4YOR171C YAL067W-AQ8TGK6 75 aa2.35□□□□□ -2.03
LCB4YOR171C TY1B-JR2P47100 1755 aaKnown RBP2.34□□□□□ -2.03
LCB4YOR171C TY1B-ER2Q03619 1755 aa2.34□□□□□ -2.03
LCB4YOR171C TY1B-MR1Q04214 1755 aa2.34□□□□□ -2.03
LCB4YOR171C TY1B-MR2Q04670 1755 aaKnown RBP2.34□□□□□ -2.03
LCB4YOR171C TY1B-LR1Q12088 1755 aaKnown RBP2.34□□□□□ -2.03
LCB4YOR171C TY1B-NL1Q12112 1755 aa2.34□□□□□ -2.03
LCB4YOR171C TY1B-GR1Q12141 1755 aa2.34□□□□□ -2.03
LCB4YOR171C TY1B-BLQ12490 1755 aa2.34□□□□□ -2.03
LCB4YOR171C NUP170P38181 1502 aa2.34□□□□□ -2.03
LCB4YOR171C PEP1P32319 1579 aa2.34□□□□□ -2.03
LCB4YOR171C HSP10P38910 106 aa2.34□□□□□ -2.03
LCB4YOR171C RRT13P40042 185 aa2.34□□□□□ -2.03
LCB4YOR171C ICY1Q04329 127 aa2.34□□□□□ -2.03
LCB4YOR171C PAU19P0CE85 124 aa2.33□□□□□ -2.04
LCB4YOR171C RPL40AP0CH08 128 aaKnown RBP2.33□□□□□ -2.04
LCB4YOR171C RPL40BP0CH09 128 aaKnown RBP2.33□□□□□ -2.04
LCB4YOR171C PAU3P25610 124 aa2.33□□□□□ -2.04
LCB4YOR171C MIG3P39943 394 aa2.33□□□□□ -2.04
LCB4YOR171C RSM18P40033 138 aa2.33□□□□□ -2.04
LCB4YOR171C CYT2Q00873 224 aa2.33□□□□□ -2.04
LCB4YOR171C RPL22AP05749 121 aaKnown RBP2.33□□□□□ -2.04
LCB4YOR171C GCV3P39726 170 aaPredicted RBP2.33□□□□□ -2.04
LCB4YOR171C YEL067CP39978 195 aa2.33□□□□□ -2.04
LCB4YOR171C YNL198CP40166 100 aa2.33□□□□□ -2.04
LCB4YOR171C BOL2P53082 120 aa2.33□□□□□ -2.04
LCB4YOR171C PIR1Q03178 341 aa2.33□□□□□ -2.04
LCB4YOR171C ATG41Q12048 136 aa2.33□□□□□ -2.04
LCB4YOR171C VMA9Q3E7B6 73 aa2.33□□□□□ -2.04
LCB4YOR171C FLO11P08640 1367 aa2.32□□□□□ -2.04
LCB4YOR171C PAU24P38155 120 aa2.32□□□□□ -2.04
LCB4YOR171C RPL22BP56628 122 aaKnown RBP2.32□□□□□ -2.04
LCB4YOR171C YML079WQ03629 201 aa2.32□□□□□ -2.04
LCB4YOR171C TMC1Q08422 150 aaPredicted RBP2.32□□□□□ -2.04
LCB4YOR171C OST5Q92316 86 aa2.32□□□□□ -2.04
LCB4YOR171C RKR1Q04781 1562 aa2.32□□□□□ -2.04
LCB4YOR171C ATG8P38182 117 aaRIP-Chip data2.31□□□□□ -2.04not detected
LCB4YOR171C YBR292CP38357 123 aa2.31□□□□□ -2.04
LCB4YOR171C YHL005CP38752 130 aa2.31□□□□□ -2.04
LCB4YOR171C DCV1P43595 202 aa2.31□□□□□ -2.04
LCB4YOR171C ICS3P47034 131 aa2.31□□□□□ -2.04
LCB4YOR171C YOR268CQ08734 132 aa2.31□□□□□ -2.04
LCB4YOR171C YLR422WQ06409 1932 aa2.31□□□□□ -2.04
LCB4YOR171C YIR020CP40575 100 aa2.31□□□□□ -2.04
LCB4YOR171C MIC27P50945 234 aa2.31□□□□□ -2.04
LCB4YOR171C YGL149WP53116 101 aa2.31□□□□□ -2.04
LCB4YOR171C BRP1P53194 125 aa2.31□□□□□ -2.04
LCB4YOR171C YNR077CP53758 84 aa2.31□□□□□ -2.04
LCB4YOR171C YOL085CQ99345 113 aa2.31□□□□□ -2.04
LCB4YOR171C KOG1P38873 1557 aa2.3□□□□□ -2.04
LCB4YOR171C SOD1P00445 154 aaKnown RBP2.3□□□□□ -2.04
LCB4YOR171C RPB7P34087 171 aa2.3□□□□□ -2.04
LCB4YOR171C YGR269WP40326 108 aa2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms