RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C BPH1P25356 2167 aa1.66□□□□□ -2.14
UFD4YKL010C RPL35AP0CX84 120 aaKnown RBP1.65□□□□□ -2.14
UFD4YKL010C RPL35BP0CX85 120 aaKnown RBP1.65□□□□□ -2.14
UFD4YKL010C YHR022CP38763 256 aa1.65□□□□□ -2.14
UFD4YKL010C YEL067CP39978 195 aa1.65□□□□□ -2.14
UFD4YKL010C YCH1P42937 148 aa1.65□□□□□ -2.14
UFD4YKL010C YOL160WQ08321 113 aa1.65□□□□□ -2.14
UFD4YKL010C DFM1Q12743 341 aaKnown RBP1.65□□□□□ -2.14
UFD4YKL010C YCL048W-AQ2V2Q2 79 aa1.65□□□□□ -2.14
UFD4YKL010C AGA1P32323 725 aa1.65□□□□□ -2.15
UFD4YKL010C YHR140WP38842 239 aa1.65□□□□□ -2.15
UFD4YKL010C NOP16P40007 231 aaKnown RBP1.65□□□□□ -2.15
UFD4YKL010C YNL198CP40166 100 aa1.65□□□□□ -2.15
UFD4YKL010C YMR141CP40211 102 aa1.65□□□□□ -2.15
UFD4YKL010C GTO3Q04806 366 aa1.65□□□□□ -2.15
UFD4YKL010C RDS3Q06835 107 aaPredicted RBP1.65□□□□□ -2.15
UFD4YKL010C PRE1P22141 198 aaKnown RBP1.65□□□□□ -2.15
UFD4YKL010C PHD1P36093 366 aa1.65□□□□□ -2.15
UFD4YKL010C CTR2P38865 189 aa1.65□□□□□ -2.15
UFD4YKL010C SNF11P38956 169 aa1.65□□□□□ -2.15
UFD4YKL010C TDA4P47153 279 aa1.65□□□□□ -2.15
UFD4YKL010C YNR077CP53758 84 aa1.65□□□□□ -2.15
UFD4YKL010C YLR194CQ05777 254 aa1.65□□□□□ -2.15
UFD4YKL010C YPR013CQ12145 317 aa1.65□□□□□ -2.15
UFD4YKL010C YLR363W-AQ3E747 85 aa1.65□□□□□ -2.15
UFD4YKL010C YOS1Q3E834 85 aa1.65□□□□□ -2.15
UFD4YKL010C YPR014CQ6B0W2 109 aa1.65□□□□□ -2.15
UFD4YKL010C Q0297Q9ZZV8 51 aa1.65□□□□□ -2.15
UFD4YKL010C TRP1P00912 224 aa1.64□□□□□ -2.15
UFD4YKL010C MSL1P40567 111 aaPredicted RBP1.64□□□□□ -2.15
UFD4YKL010C WWM1P43582 211 aaKnown RBP1.64□□□□□ -2.15
UFD4YKL010C THG1P53215 237 aaKnown RBP1.64□□□□□ -2.15
UFD4YKL010C YDR366CP87287 132 aa1.64□□□□□ -2.15
UFD4YKL010C TIM22Q12328 207 aa1.64□□□□□ -2.15
UFD4YKL010C YBR200W-AQ3E755 54 aa1.64□□□□□ -2.15
UFD4YKL010C PHO85P17157 305 aa1.64□□□□□ -2.15
UFD4YKL010C MRPL38P35996 138 aaPredicted RBP1.64□□□□□ -2.15
UFD4YKL010C ECM14P38836 430 aa1.64□□□□□ -2.15
UFD4YKL010C GLC8P41818 229 aa1.64□□□□□ -2.15
UFD4YKL010C YJR146WP47174 117 aa1.64□□□□□ -2.15
UFD4YKL010C YIP3P53633 176 aa1.64□□□□□ -2.15
UFD4YKL010C DAD4P69851 72 aa1.64□□□□□ -2.15
UFD4YKL010C AIM34Q03673 198 aa1.64□□□□□ -2.15
UFD4YKL010C DAD2P36162 133 aa1.64□□□□□ -2.15
UFD4YKL010C YNL217WP40152 326 aa1.64□□□□□ -2.15
UFD4YKL010C MSA1Q08471 629 aa1.64□□□□□ -2.15
UFD4YKL010C GEP3Q08622 556 aa1.64□□□□□ -2.15
UFD4YKL010C YDL022C-AP0C5L6 82 aa1.64□□□□□ -2.15
UFD4YKL010C RPL42AP0CX27 106 aaKnown RBP1.64□□□□□ -2.15
UFD4YKL010C RPL42BP0CX28 106 aaKnown RBP1.64□□□□□ -2.15
UFD4YKL010C VMA11P32842 164 aa1.64□□□□□ -2.15
UFD4YKL010C RNH203Q12338 110 aa1.64□□□□□ -2.15
UFD4YKL010C COX10P21592 462 aa1.63□□□□□ -2.15
UFD4YKL010C MST28P39552 234 aa1.63□□□□□ -2.15
UFD4YKL010C YLR042CQ07990 161 aa1.63□□□□□ -2.15
UFD4YKL010C YDL009CQ12210 107 aa1.63□□□□□ -2.15
UFD4YKL010C DAD1Q12248 94 aa1.63□□□□□ -2.15
UFD4YKL010C RPS8AP0CX39 200 aaKnown RBP1.63□□□□□ -2.15
UFD4YKL010C RPS8BP0CX40 200 aaKnown RBP1.63□□□□□ -2.15
UFD4YKL010C UBC5P15732 148 aa1.63□□□□□ -2.15
UFD4YKL010C TIR2P33890 251 aa1.63□□□□□ -2.15
UFD4YKL010C YML079WQ03629 201 aa1.63□□□□□ -2.15
UFD4YKL010C SPO24Q3E752 67 aa1.63□□□□□ -2.15
UFD4YKL010C AIM29P36154 155 aa1.63□□□□□ -2.15
UFD4YKL010C YAR029WP39549 74 aa1.63□□□□□ -2.15
UFD4YKL010C YMR103CQ04436 120 aa1.63□□□□□ -2.15
UFD4YKL010C HOR7Q05827 59 aa1.63□□□□□ -2.15
UFD4YKL010C DGA1Q08650 418 aa1.63□□□□□ -2.15
UFD4YKL010C PRM3Q08931 133 aa1.63□□□□□ -2.15
UFD4YKL010C YLR302CO13544 120 aa1.62□□□□□ -2.15
UFD4YKL010C APS1P35181 156 aa1.62□□□□□ -2.15
UFD4YKL010C YNL092WP53934 400 aa1.62□□□□□ -2.15
UFD4YKL010C MRPS8Q03799 155 aa1.62□□□□□ -2.15
UFD4YKL010C IRC23Q08416 157 aa1.62□□□□□ -2.15
UFD4YKL010C YHL044WP38727 235 aa1.62□□□□□ -2.15
UFD4YKL010C VPS55P47111 140 aa1.62□□□□□ -2.15
UFD4YKL010C KRE1P17260 313 aa1.62□□□□□ -2.15
UFD4YKL010C COX12Q01519 83 aa1.62□□□□□ -2.15
UFD4YKL010C IGO2Q9P305 131 aa1.62□□□□□ -2.15
UFD4YKL010C GAT4P40569 121 aa1.62□□□□□ -2.15
UFD4YKL010C CAB4P53332 305 aa1.62□□□□□ -2.15
UFD4YKL010C YMR244WQ04018 355 aa1.62□□□□□ -2.15
UFD4YKL010C SPG4Q04438 115 aa1.62□□□□□ -2.15
UFD4YKL010C YOR097CQ12274 175 aaPredicted RBP1.62□□□□□ -2.15
UFD4YKL010C PCL2P25693 308 aa1.61□□□□□ -2.15
UFD4YKL010C SEC72P39742 193 aaKnown RBP1.61□□□□□ -2.15
UFD4YKL010C VHS2P40463 436 aa1.61□□□□□ -2.15
UFD4YKL010C YGL260WP53056 76 aa1.61□□□□□ -2.15
UFD4YKL010C SAL1D6W196 494 aa1.61□□□□□ -2.15
UFD4YKL010C PAI3P01094 68 aa1.61□□□□□ -2.15
UFD4YKL010C RPS11AP0CX47 156 aaKnown RBP1.6□□□□□ -2.15
UFD4YKL010C RPS11BP0CX48 156 aaKnown RBP1.6□□□□□ -2.15
UFD4YKL010C KTI12P34253 313 aaKnown RBP1.6□□□□□ -2.15
UFD4YKL010C PEX17P40155 199 aa1.6□□□□□ -2.15
UFD4YKL010C CIN5P40917 295 aa1.6□□□□□ -2.15
UFD4YKL010C AIM11P87275 137 aa1.6□□□□□ -2.15
UFD4YKL010C UBC7Q02159 165 aa1.6□□□□□ -2.15
UFD4YKL010C CUP1-1P0CX80 61 aa1.6□□□□□ -2.15
UFD4YKL010C CUP1-2P0CX81 61 aa1.6□□□□□ -2.15
UFD4YKL010C RPF1P38805 295 aaKnown RBP1.6□□□□□ -2.15
Retrieved 100 of 5,963 RNA–protein pairs in 49.7 ms