RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C YDR010CQ12426 110 aa0.21□□□□□ -2.38
RUB1YDR139C YGL041C-BQ3E750 60 aa0.21□□□□□ -2.38
RUB1YDR139C HYM1P32464 399 aa0.2□□□□□ -2.38
RUB1YDR139C Q0144Q9ZZW2 109 aa0.19□□□□□ -2.38
RUB1YDR139C RPS20P38701 121 aaKnown RBP0.17□□□□□ -2.38
RUB1YDR139C MYO1P08964 1928 aa0.17□□□□□ -2.38
RUB1YDR139C FAS2P19097 1887 aaKnown RBP0.16□□□□□ -2.38
RUB1YDR139C YJL197C-AP0C5P0 93 aa0.16□□□□□ -2.38
RUB1YDR139C YKL044WP36092 106 aa0.16□□□□□ -2.38
RUB1YDR139C SFT1P43682 97 aa0.16□□□□□ -2.38
RUB1YDR139C SEC16P48415 2195 aaKnown RBP0.15□□□□□ -2.39
RUB1YDR139C CYC2P38909 366 aa0.15□□□□□ -2.39
RUB1YDR139C GAT4P40569 121 aa0.15□□□□□ -2.39
RUB1YDR139C YIL014C-AQ02598 104 aa0.15□□□□□ -2.39
RUB1YDR139C GPI19Q04082 140 aa0.14□□□□□ -2.39
RUB1YDR139C YDR278CQ05612 105 aa0.14□□□□□ -2.39
RUB1YDR139C CNL1Q06333 122 aa0.14□□□□□ -2.39
RUB1YDR139C YOL164W-AQ3E7A5 60 aa0.13□□□□□ -2.39
RUB1YDR139C YPK9Q12697 1472 aa0.13□□□□□ -2.39
RUB1YDR139C CYB5P40312 120 aa0.12□□□□□ -2.39
RUB1YDR139C SLO1Q3E784 85 aa0.12□□□□□ -2.39
RUB1YDR139C YHR173CP38864 112 aa0.11□□□□□ -2.39
RUB1YDR139C YLR285C-AQ3E771 56 aa0.11□□□□□ -2.39
RUB1YDR139C URB1P34241 1764 aaKnown RBP0.11□□□□□ -2.39
RUB1YDR139C SAE3P89114 91 aa0.1□□□□□ -2.39
RUB1YDR139C YBR072C-AQ3E794 53 aa0.1□□□□□ -2.39
RUB1YDR139C VPS55P47111 140 aa0.09□□□□□ -2.4
RUB1YDR139C TIM8P57744 87 aa0.09□□□□□ -2.4
RUB1YDR139C YOR376W-AQ3E805 51 aa0.09□□□□□ -2.4
RUB1YDR139C ECM5Q03214 1411 aa0.08□□□□□ -2.4
RUB1YDR139C SNF11P38956 169 aa0.08□□□□□ -2.4
RUB1YDR139C YLR361C-AQ3E795 98 aa0.08□□□□□ -2.4
RUB1YDR139C YGL204CP53089 101 aa0.07□□□□□ -2.4
RUB1YDR139C TY4B-HP0C2J7 1802 aa0.07□□□□□ -2.4
RUB1YDR139C YRF1-6P53819 1859 aa0.07□□□□□ -2.4
RUB1YDR139C PAU12P53343 120 aa0.06□□□□□ -2.4
RUB1YDR139C MRPS12P53732 153 aa0.06□□□□□ -2.4
RUB1YDR139C OST5Q92316 86 aa0.06□□□□□ -2.4
RUB1YDR139C BRR2P32639 2163 aaKnown RBP0.05□□□□□ -2.4
RUB1YDR139C DNA2P38859 1522 aa0.05□□□□□ -2.4
RUB1YDR139C YBR056W-AI2HB52 66 aa0.05□□□□□ -2.4
RUB1YDR139C COX23P38824 151 aa0.05□□□□□ -2.4
RUB1YDR139C YPL261CQ08976 102 aa0.05□□□□□ -2.4
RUB1YDR139C MYO2P19524 1574 aaKnown RBP0.05□□□□□ -2.4
RUB1YDR139C POP7P38291 140 aa0.04□□□□□ -2.4
RUB1YDR139C YGR042WP53227 271 aa0.04□□□□□ -2.4
RUB1YDR139C FRQ1Q06389 190 aa0.04□□□□□ -2.4
RUB1YDR139C PCC1Q3E833 88 aa0.04□□□□□ -2.4
RUB1YDR139C YHR130CP38834 111 aa0.03□□□□□ -2.4
RUB1YDR139C SPC24Q04477 213 aa0.03□□□□□ -2.4
RUB1YDR139C NKP2Q06162 153 aa0.03□□□□□ -2.4
RUB1YDR139C YLR363W-AQ3E747 85 aa0.03□□□□□ -2.4
RUB1YDR139C SEC7P11075 2009 aaKnown RBP0.03□□□□□ -2.41
RUB1YDR139C RPL22BP56628 122 aaKnown RBP0.02□□□□□ -2.41
RUB1YDR139C ACP1P32463 125 aa0.01□□□□□ -2.41
RUB1YDR139C TDA2P40045 126 aa0.01□□□□□ -2.41
RUB1YDR139C MRP49P32388 137 aa-0.01□□□□□ -2.41
RUB1YDR139C DYN2Q02647 92 aa-0.01□□□□□ -2.41
RUB1YDR139C SNN1P48232 102 aa-0.02□□□□□ -2.41
RUB1YDR139C TAO3P40468 2376 aa-0.02□□□□□ -2.41
RUB1YDR139C HMRA2P0CY13 119 aa-0.03□□□□□ -2.41
RUB1YDR139C GCV3P39726 170 aaPredicted RBP-0.03□□□□□ -2.41
RUB1YDR139C YER187WP40102 141 aa-0.03□□□□□ -2.41
RUB1YDR139C YIR020CP40575 100 aa-0.04□□□□□ -2.42
RUB1YDR139C RPA12P32529 125 aaKnown RBP-0.05□□□□□ -2.42
RUB1YDR139C DAD1Q12248 94 aa-0.05□□□□□ -2.42
RUB1YDR139C PAU24P38155 120 aa-0.06□□□□□ -2.42
RUB1YDR139C AIM11P87275 137 aa-0.06□□□□□ -2.42
RUB1YDR139C ADK1P07170 222 aaKnown RBP-0.07□□□□□ -2.42
RUB1YDR139C YIL086CP40503 102 aa-0.07□□□□□ -2.42
RUB1YDR139C YNL190WP53872 204 aa-0.07□□□□□ -2.42
RUB1YDR139C YLR118CQ12354 227 aa-0.07□□□□□ -2.42
RUB1YDR139C YLR255CO13574 117 aa-0.08□□□□□ -2.42
RUB1YDR139C RPB11P38902 120 aa-0.08□□□□□ -2.42
RUB1YDR139C YCL048W-AQ2V2Q2 79 aa-0.08□□□□□ -2.42
RUB1YDR139C YCR099CP25657 155 aa-0.09□□□□□ -2.42
RUB1YDR139C PAU2P32612 120 aa-0.09□□□□□ -2.42
RUB1YDR139C SHU1P38751 150 aa-0.09□□□□□ -2.42
RUB1YDR139C SPC2Q04969 178 aa-0.09□□□□□ -2.42
RUB1YDR139C RAD50P12753 1312 aa-0.1□□□□□ -2.42
RUB1YDR139C YLR099W-AQ3E798 87 aa-0.1□□□□□ -2.43
RUB1YDR139C CCW14O13547 238 aa-0.11□□□□□ -2.43
RUB1YDR139C VMA7P39111 118 aa-0.11□□□□□ -2.43
RUB1YDR139C YOR097CQ12274 175 aaPredicted RBP-0.11□□□□□ -2.43
RUB1YDR139C GTT1P40582 234 aa-0.12□□□□□ -2.43
RUB1YDR139C LSM6Q06406 86 aaKnown RBP-0.12□□□□□ -2.43
RUB1YDR139C PAU19P0CE85 124 aa-0.13□□□□□ -2.43
RUB1YDR139C PAU3P25610 124 aa-0.13□□□□□ -2.43
RUB1YDR139C IMP2P46972 177 aa-0.13□□□□□ -2.43
RUB1YDR139C ATX1P38636 73 aa-0.14□□□□□ -2.43
RUB1YDR139C TOP2P06786 1428 aaKnown RBP-0.14□□□□□ -2.43
RUB1YDR139C YAR029WP39549 74 aa-0.15□□□□□ -2.43
RUB1YDR139C COX19Q3E731 98 aa-0.15□□□□□ -2.43
RUB1YDR139C YOL118CQ08259 102 aa-0.16□□□□□ -2.44
RUB1YDR139C YLR365WQ7LIF2 110 aa-0.16□□□□□ -2.44
RUB1YDR139C MPC2P38857 129 aa-0.17□□□□□ -2.44
RUB1YDR139C PAM16P42949 149 aa-0.17□□□□□ -2.44
RUB1YDR139C RIM15P43565 1770 aa-0.18□□□□□ -2.44
RUB1YDR139C POL2P21951 2222 aaKnown RBP-0.19□□□□□ -2.44
RUB1YDR139C RUB1Q03919 77 aa-0.19□□□□□ -2.44
Retrieved 100 of 5,963 RNA–protein pairs in 43.2 ms