RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TMEM140Q9NV12 185 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 ARPP21Q9UBL0 812 aaPredicted RBP4.93□□□□□ -1.62
VPS29-202ENST00000447578 PCDHA3Q9Y5H8 950 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 ERCC6Q03468 1493 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 EPRSP07814 1512 aaKnown RBP4.92□□□□□ -1.62
VPS29-202ENST00000447578 TONSLQ96HA7 1378 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 SUPT6HQ7KZ85 1726 aaKnown RBP4.92□□□□□ -1.62
VPS29-202ENST00000447578 UACAQ9BZF9 1416 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 A0A1W2PPL8 197 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 LRRC14BA6NHZ5 514 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 AMY1AP04745 511 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 ABCB4P21439 1286 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 PPM1AP35813 382 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 RENBPP51606 427 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 CASP5P51878 434 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 HK3P52790 923 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 SRSF4Q08170 494 aaKnown RBP4.92□□□□□ -1.62
VPS29-202ENST00000447578 MGAT2Q10469 447 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 NOGQ13253 232 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 ALFQ53S48 1182 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 DGKKQ5KSL6 1271 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 IZUMO3Q5VZ72 239 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 ZNF788Q6ZQV5 615 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 COLGALT2Q8IYK4 626 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 ZGPATQ8N5A5 531 aaKnown RBP4.92□□□□□ -1.62
VPS29-202ENST00000447578 NKAPQ8N5F7 415 aaKnown RBP4.92□□□□□ -1.62
VPS29-202ENST00000447578 Q8NA96 180 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 SPATA5Q8NB90 893 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.92□□□□□ -1.62
VPS29-202ENST00000447578 TBC1D15Q8TC07 691 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 NSUN6Q8TEA1 469 aaKnown RBP4.92□□□□□ -1.62
VPS29-202ENST00000447578 ANKS1AQ92625 1134 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 SLC35A4Q96G79 324 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 BTBD1Q9H0C5 482 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 ZMAT3Q9HA38 289 aaKnown RBP4.92□□□□□ -1.62
VPS29-202ENST00000447578 ATP6V0A4Q9HBG4 840 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 ZNF287Q9HBT7 754 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 STARD7Q9NQZ5 370 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 RRP7BPQ9NSQ0 103 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 LMBRD1Q9NUN5 540 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 TDP1Q9NUW8 608 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 TERF2IPQ9NYB0 399 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 STAP2Q9UGK3 403 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 CDC23Q9UJX2 597 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 GTF2A1LQ9UNN4 478 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 ARHGEF11O15085 1522 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 CDK13Q14004 1512 aaKnown RBP4.92□□□□□ -1.62
VPS29-202ENST00000447578 KIAA0586Q9BVV6 1533 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 LRRIQ1Q96JM4 1722 aa4.92□□□□□ -1.62
VPS29-202ENST00000447578 NAIPQ13075 1403 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 PTPN23Q9H3S7 1636 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 FOXN3O00409 490 aaPredicted RBP4.91□□□□□ -1.62
VPS29-202ENST00000447578 PHGDHO43175 533 aaKnown RBP4.91□□□□□ -1.62
VPS29-202ENST00000447578 FRS3O43559 492 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 NCK2O43639 380 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 SGTAO43765 313 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 PEX1O43933 1283 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 CHKAP35790 457 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 STT3AP46977 705 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 NKX6-1P78426 367 aaPredicted RBP4.91□□□□□ -1.62
VPS29-202ENST00000447578 TNFAIP2Q03169 654 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 SLFN5Q08AF3 891 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 ZNF543Q08ER8 600 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 ELF2Q15723 593 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 KHDC1Q4VXA5 237 aaKnown RBP4.91□□□□□ -1.62
VPS29-202ENST00000447578 CCDC70Q6NSX1 233 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 HEATR3Q7Z4Q2 680 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 RSPH3Q86UC2 560 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 FITM2Q8N6M3 262 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 CASKIN2Q8WXE0 1202 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 KIAA1191Q96A73 305 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 PNKPQ96T60 521 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 VRK1Q99986 396 aaPredicted RBP4.91□□□□□ -1.62
VPS29-202ENST00000447578 PNPOQ9NVS9 261 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 OGDHLQ9ULD0 1010 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 PADI4Q9UM07 663 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 TCOF1Q13428 1488 aaKnown RBP4.91□□□□□ -1.62
VPS29-202ENST00000447578 USP19O94966 1318 aa4.91□□□□□ -1.62
VPS29-202ENST00000447578 MIA2Q96PC5 1412 aa4.9□□□□□ -1.62
VPS29-202ENST00000447578 GRIN2AQ12879 1464 aa4.9□□□□□ -1.62
VPS29-202ENST00000447578 TRGV11A0A075B6L2 103 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 POM121BA6NF01 834 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 PROB1E7EW31 1015 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 KIAA0391O15091 583 aaKnown RBP4.9□□□□□ -1.63
VPS29-202ENST00000447578 YY2O15391 372 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 PROP1O75360 226 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 GPR32O75388 356 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 ENDOD1O94919 500 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 ARIH2O95376 493 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 KITP10721 976 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 FCER1AP12319 257 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 SMARCA1P28370 1054 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 IL6STP40189 918 aaPredicted RBP4.9□□□□□ -1.63
VPS29-202ENST00000447578 FOLR3P41439 243 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 CCT5P48643 541 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 MAPK10P53779 464 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 CDC42EP1Q00587 391 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 DDX10Q13206 875 aaKnown RBP4.9□□□□□ -1.63
VPS29-202ENST00000447578 MTM1Q13496 603 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 PLS1Q14651 629 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms