RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC1	YFL008W	VAR1	P02381	398 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	MRS1	P07266	363 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	MRPL20	P22354	195 aa	Predicted RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	INO2	P26798	304 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	IES6	P32617	166 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	UTR5	P32630	166 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	EMP24	P32803	203 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	YKL044W	P36092	106 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	SHB17	P36136	271 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	NRG2	P38082	220 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	PAU24	P38155	120 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YBR090C	P38253	122 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YGP1	P38616	354 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	PEX22	P39718	180 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YER181C	P40097	107 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YNL208W	P40159	199 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	COA1	P40452	197 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	BAT2	P47176	376 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	PAU4	P53427	120 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	COF1	Q03048	143 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	GAS3	Q03655	524 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	SHH3	Q04487	196 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YDR115W	Q04598	105 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	RNH202	Q05635	350 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	ARC18	Q05933	178 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	YOR105W	Q08504	108 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	NAT5	Q08689	176 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	RAD28	Q12021	506 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YDL180W	Q12301	547 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	PST1	Q12355	444 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YKL023C-A	Q2V2P3	75 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YGL194C-A	Q2V2P6	80 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YPL119C-A	Q3E751	87 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	FMP49	A0A023PZB3	126 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YDR157W	A0A023PZE8	133 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	CUP2	P15315	225 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	CKS1	P20486	150 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	PPH21	P23594	369 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	TRX3	P25372	127 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	ERG24	P32462	438 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	APS1	P35181	156 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YOR062C	P36025	268 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	OSW5	P40219	148 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YJR111C	P47148	283 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	YPL080C	Q02826	108 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	SDC1	Q03323	175 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	MZM1	Q03429	123 aa	Predicted RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	YDR102C	Q03864	110 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	COX19	Q3E731	98 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YLR412C-A	Q3E742	68 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	ODC2	Q99297	307 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	COX2	P00410	251 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	Q0255	P03881	472 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	YKR104W	P0CE69	306 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	SCO1	P23833	295 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	RPA12	P32529	125 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	YKL070W	P36087	169 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	ECM33	P38248	429 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	SLM6	P38343	150 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	HTD2	P38790	280 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	PAU7	P39545	55 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	CCS1	P40202	249 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	PAM16	P42949	149 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	GPI2	P46961	280 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	TDA4	P47153	279 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	SPG1	P50088	95 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	RSM19	P53733	91 aa	Predicted RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	YPL039W	Q03080	316 aa		0.79	□□□□□ -2.28
SMC1	YFL008W	SPG3	Q04398	127 aa	Predicted RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	GRH1	Q04410	372 aa	Known RBP	0.79	□□□□□ -2.28
SMC1	YFL008W	YPR170W-B	P0C5R9	85 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YOL162W	P0CF19	215 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	SEC11	P15367	167 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	FPR1	P20081	114 aa	Known RBP	0.78	□□□□□ -2.28
SMC1	YFL008W	HSP12	P22943	109 aa	Known RBP	0.78	□□□□□ -2.28
SMC1	YFL008W	SPO13	P23624	291 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YPS1	P32329	569 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	SPS18	P32572	300 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	ZRT1	P32804	376 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YHL026C	P38740	315 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	SNF11	P38956	169 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YEL028W	P39989	153 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YNL217W	P40152	326 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	OST2	P46964	130 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	UBC13	P52490	153 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YGL230C	P53074	147 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	ATG41	Q12048	136 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	EMC6	Q12431	108 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	BOL1	Q3E793	110 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	TIM9	O74700	87 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	RPL16B	P26785	198 aa	Known RBP	0.78	□□□□□ -2.28
SMC1	YFL008W	TOM6	P33448	61 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YHL042W	P38729	150 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	GLE2	P40066	365 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	MPM1	P40364	252 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YFL065C	P43539	102 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YGR164W	P53291	111 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	COQ10	Q08058	207 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YPR203W	Q08994	102 aa		0.78	□□□□□ -2.28
SMC1	YFL008W	YOR015W	Q12169	119 aa		0.78	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 61.7 ms