RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	CGR1	P53188	120 aa		2.97	□□□□□ -1.93
UBX5	YDR330W	HAL1	Q01766	294 aa		2.97	□□□□□ -1.93
UBX5	YDR330W	SHH3	Q04487	196 aa		2.97	□□□□□ -1.93
UBX5	YDR330W	RPS22A	P0C0W1	130 aa	Known RBP	2.96	□□□□□ -1.94
UBX5	YDR330W	PAU19	P0CE85	124 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	PAU21	P0CE86	164 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	PAU22	P0CE87	164 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	TOM40	P23644	387 aa	Known RBP	2.96	□□□□□ -1.94
UBX5	YDR330W	PAU3	P25610	124 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	QRI5	P32344	111 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	FPR2	P32472	135 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	ECM14	P38836	430 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	SUR2	P38992	349 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	PAU5	P43575	122 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	SSU72	P53538	206 aa	Predicted RBP	2.96	□□□□□ -1.94
UBX5	YDR330W	DAD3	P69850	94 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	ARL3	Q02804	198 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	YMR244W	Q04018	355 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	GTO3	Q04806	366 aa		2.96	□□□□□ -1.94
UBX5	YDR330W	TOR2	P32600	2474 aa	Known RBP	2.95	□□□□□ -1.94
UBX5	YDR330W	FMP49	A0A023PZB3	126 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	YBR056W-A	I2HB52	66 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	HTB1	P02293	131 aa	Known RBP	2.95	□□□□□ -1.94
UBX5	YDR330W	SSS1	P35179	80 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	YAR068W	P39564	161 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	YER121W	P40076	114 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	GPI2	P46961	280 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	YGL118C	P53132	145 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	APS2	Q00381	147 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	YHP1	Q04116	353 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	LOA1	Q06508	300 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	YPR063C	Q12160	140 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	YAL067W-A	Q8TGK6	75 aa		2.95	□□□□□ -1.94
UBX5	YDR330W	TRA1	P38811	3744 aa		2.94	□□□□□ -1.94
UBX5	YDR330W	MRPL28	P36527	147 aa		2.94	□□□□□ -1.94
UBX5	YDR330W	CSH1	P38287	376 aa		2.94	□□□□□ -1.94
UBX5	YDR330W	EDC2	P40023	145 aa	Predicted RBP	2.94	□□□□□ -1.94
UBX5	YDR330W	CYB5	P40312	120 aa		2.94	□□□□□ -1.94
UBX5	YDR330W	YIL012W	P40551	113 aa		2.94	□□□□□ -1.94
UBX5	YDR330W	LSM8	P47093	109 aa	Known RBP	2.94	□□□□□ -1.94
UBX5	YDR330W	DSK2	P48510	373 aa		2.94	□□□□□ -1.94
UBX5	YDR330W	YNR064C	P53750	290 aa		2.94	□□□□□ -1.94
UBX5	YDR330W	MIX17	Q03667	156 aa		2.94	□□□□□ -1.94
UBX5	YDR330W	SOD1	P00445	154 aa	Known RBP	2.93	□□□□□ -1.94
UBX5	YDR330W	SRP21	P32342	167 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	YKR045C	P36138	183 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	YBL071C	P38185	102 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	SRP14	P38985	146 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	BDH1	P39714	382 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	CYT2	Q00873	224 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	CUE4	Q04201	117 aa	Predicted RBP	2.93	□□□□□ -1.94
UBX5	YDR330W	NAT3	Q06504	195 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	ARR2	Q06597	130 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	GEP5	Q12393	293 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	DCN1	Q12395	269 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	DFM1	Q12743	341 aa	Known RBP	2.93	□□□□□ -1.94
UBX5	YDR330W	YCL048W-A	Q2V2Q2	79 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	YGL010W	P25338	174 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	TCA17	P32613	152 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	IRC22	P40006	225 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	YIL163C	P40448	117 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	LST8	P41318	303 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	YGR018C	P53211	109 aa		2.93	□□□□□ -1.94
UBX5	YDR330W	SMT3	Q12306	101 aa	Known RBP	2.93	□□□□□ -1.94
UBX5	YDR330W	HSP12	P22943	109 aa	Known RBP	2.92	□□□□□ -1.94
UBX5	YDR330W	SUA7	P29055	345 aa	Predicted RBP	2.92	□□□□□ -1.94
UBX5	YDR330W	DOG2	P38773	246 aa		2.92	□□□□□ -1.94
UBX5	YDR330W	DOG1	P38774	246 aa		2.92	□□□□□ -1.94
UBX5	YDR330W	YHR173C	P38864	112 aa		2.92	□□□□□ -1.94
UBX5	YDR330W	SBH2	P52871	88 aa		2.92	□□□□□ -1.94
UBX5	YDR330W	SEN15	Q04675	128 aa		2.92	□□□□□ -1.94
UBX5	YDR330W	YOR105W	Q08504	108 aa		2.92	□□□□□ -1.94
UBX5	YDR330W	FIT2	Q08906	153 aa		2.92	□□□□□ -1.94
UBX5	YDR330W	ATO3	Q12359	275 aa		2.92	□□□□□ -1.94
UBX5	YDR330W	LSO2	Q3E772	92 aa	Known RBP	2.92	□□□□□ -1.94
UBX5	YDR330W	ADH1	P00330	348 aa	Known RBP	2.91	□□□□□ -1.94
UBX5	YDR330W	POR1	P04840	283 aa	Known RBP	2.91	□□□□□ -1.94
UBX5	YDR330W	YKL075C	P36083	450 aa		2.91	□□□□□ -1.94
UBX5	YDR330W	SFT2	P38166	215 aa		2.91	□□□□□ -1.94
UBX5	YDR330W	LSM4	P40070	187 aa	Known RBP	2.91	□□□□□ -1.94
UBX5	YDR330W	ERV14	P53173	138 aa		2.91	□□□□□ -1.94
UBX5	YDR330W	ECM19	Q06011	112 aa		2.91	□□□□□ -1.94
UBX5	YDR330W	YNR034W-A	Q3E841	98 aa		2.91	□□□□□ -1.94
UBX5	YDR330W	YOL085C	Q99345	113 aa		2.91	□□□□□ -1.94
UBX5	YDR330W	TIR1	P10863	254 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	LSM2	P38203	95 aa	Known RBP	2.9	□□□□□ -1.95
UBX5	YDR330W	YBR090C	P38253	122 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	OST3	P48439	350 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	CAX4	P53223	239 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	HST4	P53688	370 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	ATP19	P81451	68 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	RAV2	Q03956	351 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	SDH7	Q04401	133 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	FCY1	Q12178	158 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	YAL063C-A	Q3E791	96 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	COA6	Q3E846	104 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	YCL001W-B	Q96VH2	84 aa		2.9	□□□□□ -1.95
UBX5	YDR330W	MRS1	P07266	363 aa		2.89	□□□□□ -1.95
UBX5	YDR330W	DDI2	P0CH63	225 aa		2.89	□□□□□ -1.95
UBX5	YDR330W	DDI3	P0CH64	225 aa		2.89	□□□□□ -1.95

Retrieved 100 of 5,963 RNA–protein pairs in 57.7 ms