RNA–Protein interactions for RNA: YDR073W

SNF11, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SNF11, Length 510 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNF11	YDR073W	IPT1	P38954	527 aa		3.37	□□□□□ -1.87
SNF11	YDR073W	RPS12	P48589	143 aa	Known RBP	3.37	□□□□□ -1.87
SNF11	YDR073W	YMR252C	Q04814	134 aa		3.37	□□□□□ -1.87
SNF11	YDR073W	NAT5	Q08689	176 aa		3.37	□□□□□ -1.87
SNF11	YDR073W	FYV7	Q12247	151 aa		3.37	□□□□□ -1.87
SNF11	YDR073W	CMC4	Q3E7A9	73 aa		3.37	□□□□□ -1.87
SNF11	YDR073W	HSP150	P32478	413 aa		3.36	□□□□□ -1.87
SNF11	YDR073W	YGL230C	P53074	147 aa		3.36	□□□□□ -1.87
SNF11	YDR073W	QCR8	P08525	94 aa		3.35	□□□□□ -1.87
SNF11	YDR073W	CWC27	Q02770	301 aa		3.35	□□□□□ -1.87
SNF11	YDR073W	GPI11	Q06636	219 aa		3.35	□□□□□ -1.87
SNF11	YDR073W	RTR2	Q12378	196 aa		3.35	□□□□□ -1.87
SNF11	YDR073W	YOR376W-A	Q3E805	51 aa		3.35	□□□□□ -1.87
SNF11	YDR073W	TSC11	P40061	1430 aa		3.35	□□□□□ -1.87
SNF11	YDR073W	UTP11	P34247	250 aa	Predicted RBP	3.34	□□□□□ -1.87
SNF11	YDR073W	YAE1	P47118	141 aa	Predicted RBP	3.34	□□□□□ -1.87
SNF11	YDR073W	TOP2	P06786	1428 aa	Known RBP	3.34	□□□□□ -1.88
SNF11	YDR073W	YCR099C	P25657	155 aa		3.33	□□□□□ -1.88
SNF11	YDR073W	YAR029W	P39549	74 aa		3.33	□□□□□ -1.88
SNF11	YDR073W	BRP1	P53194	125 aa		3.33	□□□□□ -1.88
SNF11	YDR073W	GTT2	Q12390	233 aa		3.33	□□□□□ -1.88
SNF11	YDR073W	PAU21	P0CE86	164 aa		3.32	□□□□□ -1.88
SNF11	YDR073W	PAU22	P0CE87	164 aa		3.32	□□□□□ -1.88
SNF11	YDR073W	RPL13B	P40212	199 aa	Known RBP	3.32	□□□□□ -1.88
SNF11	YDR073W	DCV1	P43595	202 aa		3.32	□□□□□ -1.88
SNF11	YDR073W	ERV14	P53173	138 aa		3.32	□□□□□ -1.88
SNF11	YDR073W	RPL13A	Q12690	199 aa	Predicted RBP	3.32	□□□□□ -1.88
SNF11	YDR073W	YNL146C-A	Q3E7Z1	64 aa		3.32	□□□□□ -1.88
SNF11	YDR073W	TAR1	Q8TGM6	124 aa		3.32	□□□□□ -1.88
SNF11	YDR073W	SEC59	P20048	519 aa		3.31	□□□□□ -1.88
SNF11	YDR073W	YKL044W	P36092	106 aa		3.31	□□□□□ -1.88
SNF11	YDR073W	HSP10	P38910	106 aa		3.31	□□□□□ -1.88
SNF11	YDR073W	YPL225W	Q08971	146 aa	Known RBP	3.31	□□□□□ -1.88
SNF11	YDR073W	TY1B-H	O13535	1793 aa		3.3	□□□□□ -1.88
SNF11	YDR073W	SRL3	P36167	246 aa		3.3	□□□□□ -1.88
SNF11	YDR073W	PAM16	P42949	149 aa		3.3	□□□□□ -1.88
SNF11	YDR073W	RIF1	P29539	1916 aa		3.3	□□□□□ -1.88
SNF11	YDR073W	FUN14	P18411	198 aa		3.29	□□□□□ -1.88
SNF11	YDR073W	PRE1	P22141	198 aa	Known RBP	3.29	□□□□□ -1.88
SNF11	YDR073W	YEL008W	P40001	126 aa		3.29	□□□□□ -1.88
SNF11	YDR073W	YFR035C	P43608	114 aa		3.29	□□□□□ -1.88
SNF11	YDR073W	HYP2	P23301	157 aa	Known RBP	3.28	□□□□□ -1.88
SNF11	YDR073W	YCR101C	P25607	182 aa		3.28	□□□□□ -1.88
SNF11	YDR073W	SNF11	P38956	169 aa		3.28	□□□□□ -1.88
SNF11	YDR073W	BAT2	P47176	376 aa	Known RBP	3.28	□□□□□ -1.88
SNF11	YDR073W	YGL149W	P53116	101 aa		3.28	□□□□□ -1.88
SNF11	YDR073W	YPL067C	Q02754	198 aa		3.28	□□□□□ -1.88
SNF11	YDR073W	YOR289W	Q12012	251 aa	Predicted RBP	3.28	□□□□□ -1.88
SNF11	YDR073W	YGR164W	P53291	111 aa		3.27	□□□□□ -1.89
SNF11	YDR073W	GPI19	Q04082	140 aa		3.27	□□□□□ -1.89
SNF11	YDR073W	TRM732	Q03496	1420 aa		3.27	□□□□□ -1.89
SNF11	YDR073W	VAR1	P02381	398 aa		3.26	□□□□□ -1.89
SNF11	YDR073W	HAP3	P13434	144 aa		3.26	□□□□□ -1.89
SNF11	YDR073W	YFL051C	P43552	160 aa		3.26	□□□□□ -1.89
SNF11	YDR073W	GNA1	P43577	159 aa	Predicted RBP	3.26	□□□□□ -1.89
SNF11	YDR073W	OCA6	Q12454	224 aa		3.26	□□□□□ -1.89
SNF11	YDR073W	BUD4	P47136	1447 aa		3.26	□□□□□ -1.89
SNF11	YDR073W	YCL042W	P25572	119 aa		3.25	□□□□□ -1.89
SNF11	YDR073W	TDA2	P40045	126 aa		3.25	□□□□□ -1.89
SNF11	YDR073W	YGL010W	P25338	174 aa		3.24	□□□□□ -1.89
SNF11	YDR073W	VAM10	Q08474	114 aa		3.24	□□□□□ -1.89
SNF11	YDR073W	COA3	Q3E7B2	85 aa		3.23	□□□□□ -1.89
SNF11	YDR073W	MHF1	Q3E835	90 aa		3.23	□□□□□ -1.89
SNF11	YDR073W	YBR090C	P38253	122 aa		3.22	□□□□□ -1.89
SNF11	YDR073W	RTC6	O14464	93 aa		3.21	□□□□□ -1.9
SNF11	YDR073W	FPR1	P20081	114 aa	Known RBP	3.21	□□□□□ -1.9
SNF11	YDR073W	MRPL11	P36521	249 aa	Predicted RBP	3.21	□□□□□ -1.9
SNF11	YDR073W	EMP24	P32803	203 aa	Known RBP	3.2	□□□□□ -1.9
SNF11	YDR073W	SED1	Q01589	338 aa		3.2	□□□□□ -1.9
SNF11	YDR073W	ZEO1	Q08245	113 aa		3.2	□□□□□ -1.9
SNF11	YDR073W	MED11	Q99278	115 aa		3.2	□□□□□ -1.9
SNF11	YDR073W	CYR1	P08678	2026 aa	Known RBP	3.19	□□□□□ -1.9
SNF11	YDR073W	UBC5	P15732	148 aa		3.19	□□□□□ -1.9
SNF11	YDR073W	BUD23	P25627	275 aa	Predicted RBP	3.19	□□□□□ -1.9
SNF11	YDR073W	YBR027C	P38220	110 aa		3.19	□□□□□ -1.9
SNF11	YDR073W	YBR242W	P38331	238 aa		3.19	□□□□□ -1.9
SNF11	YDR073W	YEA6	P39953	335 aa		3.19	□□□□□ -1.9
SNF11	YDR073W	YLR296W	Q05898	108 aa		3.19	□□□□□ -1.9
SNF11	YDR073W	YLR365W	Q7LIF2	110 aa		3.19	□□□□□ -1.9
SNF11	YDR073W	SKI3	P17883	1432 aa	Known RBP	3.19	□□□□□ -1.9
SNF11	YDR073W	YHR213W	P0CI67	198 aa		3.17	□□□□□ -1.9
SNF11	YDR073W	AIM18	P38884	321 aa		3.17	□□□□□ -1.9
SNF11	YDR073W	YFL065C	P43539	102 aa		3.17	□□□□□ -1.9
SNF11	YDR073W	IGO1	P53897	168 aa		3.17	□□□□□ -1.9
SNF11	YDR073W	FIT1	Q04433	528 aa		3.17	□□□□□ -1.9
SNF11	YDR073W	KRE5	P22023	1365 aa		3.16	□□□□□ -1.9
SNF11	YDR073W	RPL36B	O14455	100 aa	Known RBP	3.16	□□□□□ -1.9
SNF11	YDR073W	RPL33A	P05744	107 aa	Known RBP	3.16	□□□□□ -1.9
SNF11	YDR073W	RPL36A	P05745	100 aa	Predicted RBP	3.16	□□□□□ -1.9
SNF11	YDR073W	YGL014C-A	P0C5N1	53 aa		3.16	□□□□□ -1.9
SNF11	YDR073W	YMR103C	Q04436	120 aa		3.16	□□□□□ -1.9
SNF11	YDR073W	YPL261C	Q08976	102 aa		3.16	□□□□□ -1.9
SNF11	YDR073W	HAP2	P06774	265 aa		3.15	□□□□□ -1.91
SNF11	YDR073W	RPL40A	P0CH08	128 aa	Known RBP	3.15	□□□□□ -1.91
SNF11	YDR073W	RPL40B	P0CH09	128 aa	Known RBP	3.15	□□□□□ -1.91
SNF11	YDR073W	YER187W	P40102	141 aa		3.15	□□□□□ -1.91
SNF11	YDR073W	PDR11	P40550	1411 aa		3.15	□□□□□ -1.91
SNF11	YDR073W	PFY1	P07274	126 aa		3.14	□□□□□ -1.91
SNF11	YDR073W	YJL197C-A	P0C5P0	93 aa		3.14	□□□□□ -1.91
SNF11	YDR073W	ATG8	P38182	117 aa	RIP-Chip data	3.14	□□□□□ -1.91	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 94.6 ms