RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeast

Gene CTK3, Length 891 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK3	YML112W	YDR366C	P87287	132 aa		0.92	□□□□□ -2.26
CTK3	YML112W	SPG3	Q04398	127 aa	Predicted RBP	0.92	□□□□□ -2.26
CTK3	YML112W	RIM9	Q04734	239 aa		0.92	□□□□□ -2.26
CTK3	YML112W	YMR252C	Q04814	134 aa		0.92	□□□□□ -2.26
CTK3	YML112W	RNH202	Q05635	350 aa		0.92	□□□□□ -2.26
CTK3	YML112W	NKP2	Q06162	153 aa		0.92	□□□□□ -2.26
CTK3	YML112W	YLR042C	Q07990	161 aa		0.92	□□□□□ -2.26
CTK3	YML112W	ATP14	Q12349	124 aa		0.92	□□□□□ -2.26
CTK3	YML112W	YGL194C-A	Q2V2P6	80 aa		0.92	□□□□□ -2.26
CTK3	YML112W	YLR412C-A	Q3E742	68 aa		0.92	□□□□□ -2.26
CTK3	YML112W	YCR075W-A	Q3E830	75 aa		0.92	□□□□□ -2.26
CTK3	YML112W	KRE5	P22023	1365 aa		0.92	□□□□□ -2.26
CTK3	YML112W	SPA2	P23201	1466 aa	Known RBP	0.92	□□□□□ -2.26
CTK3	YML112W	TIM9	O74700	87 aa		0.91	□□□□□ -2.26
CTK3	YML112W	CPA1	P07258	411 aa	Known RBP	0.91	□□□□□ -2.26
CTK3	YML112W	BET1	P22804	142 aa		0.91	□□□□□ -2.26
CTK3	YML112W	PAM17	P36147	197 aa		0.91	□□□□□ -2.26
CTK3	YML112W	MRPL15	P36523	253 aa		0.91	□□□□□ -2.26
CTK3	YML112W	SFT2	P38166	215 aa		0.91	□□□□□ -2.26
CTK3	YML112W	YBR090C	P38253	122 aa		0.91	□□□□□ -2.26
CTK3	YML112W	NSG1	P38837	291 aa		0.91	□□□□□ -2.26
CTK3	YML112W	AIM2	P39721	246 aa		0.91	□□□□□ -2.26
CTK3	YML112W	YEA6	P39953	335 aa		0.91	□□□□□ -2.26
CTK3	YML112W	NSA2	P40078	261 aa	Known RBP	0.91	□□□□□ -2.26
CTK3	YML112W	YNL200C	P40165	246 aa	Known RBP	0.91	□□□□□ -2.26
CTK3	YML112W	MPM1	P40364	252 aa		0.91	□□□□□ -2.26
CTK3	YML112W	PHS1	P40857	217 aa		0.91	□□□□□ -2.26
CTK3	YML112W	CUP9	P41817	306 aa		0.91	□□□□□ -2.26
CTK3	YML112W	SKI6	P46948	246 aa	Predicted RBP	0.91	□□□□□ -2.26
CTK3	YML112W	BOL2	P53082	120 aa		0.91	□□□□□ -2.26
CTK3	YML112W	RCE1	Q03530	315 aa		0.91	□□□□□ -2.26
CTK3	YML112W	TVP18	Q04767	167 aa		0.91	□□□□□ -2.26
CTK3	YML112W	ANT1	Q06497	328 aa		0.91	□□□□□ -2.26
CTK3	YML112W	YOR097C	Q12274	175 aa	Predicted RBP	0.91	□□□□□ -2.26
CTK3	YML112W	MYO2	P19524	1574 aa	Known RBP	0.91	□□□□□ -2.26
CTK3	YML112W	PDR10	P51533	1564 aa		0.91	□□□□□ -2.26
CTK3	YML112W	PDR11	P40550	1411 aa		0.9	□□□□□ -2.26
CTK3	YML112W	POR1	P04840	283 aa	Known RBP	0.9	□□□□□ -2.27
CTK3	YML112W	SPS2	P08459	502 aa		0.9	□□□□□ -2.27
CTK3	YML112W	DDR48	P18899	430 aa	Known RBP	0.9	□□□□□ -2.27
CTK3	YML112W	HSP12	P22943	109 aa	Known RBP	0.9	□□□□□ -2.27
CTK3	YML112W	YCR050C	P25630	102 aa		0.9	□□□□□ -2.27
CTK3	YML112W	SKG1	P36169	355 aa		0.9	□□□□□ -2.27
CTK3	YML112W	YAR029W	P39549	74 aa		0.9	□□□□□ -2.27
CTK3	YML112W	YFR035C	P43608	114 aa		0.9	□□□□□ -2.27
CTK3	YML112W	EAF6	P47128	113 aa		0.9	□□□□□ -2.27
CTK3	YML112W	TDA4	P47153	279 aa		0.9	□□□□□ -2.27
CTK3	YML112W	XPT1	P47165	209 aa		0.9	□□□□□ -2.27
CTK3	YML112W	EMC4	P53073	190 aa		0.9	□□□□□ -2.27
CTK3	YML112W	MPC3	P53311	146 aa		0.9	□□□□□ -2.27
CTK3	YML112W	VPS28	Q02767	242 aa		0.9	□□□□□ -2.27
CTK3	YML112W	ZEO1	Q08245	113 aa		0.9	□□□□□ -2.27
CTK3	YML112W	GTT2	Q12390	233 aa		0.9	□□□□□ -2.27
CTK3	YML112W	ADE6	P38972	1358 aa	Known RBP	0.9	□□□□□ -2.27
CTK3	YML112W	RSF2	P46974	1380 aa		0.9	□□□□□ -2.27
CTK3	YML112W	TY1B-PR2	P0C2J0	1756 aa		0.9	□□□□□ -2.27
CTK3	YML112W	TRM3	Q07527	1436 aa		0.89	□□□□□ -2.27
CTK3	YML112W	RPO31	P04051	1460 aa		0.89	□□□□□ -2.27
CTK3	YML112W	YAR023C	D6VPM8	179 aa		0.89	□□□□□ -2.27
CTK3	YML112W	YGL041W-A	P0C5N3	154 aa		0.89	□□□□□ -2.27
CTK3	YML112W	PRE1	P22141	198 aa	Known RBP	0.89	□□□□□ -2.27
CTK3	YML112W	ECM31	P38122	312 aa		0.89	□□□□□ -2.27
CTK3	YML112W	GAA1	P39012	614 aa		0.89	□□□□□ -2.27
CTK3	YML112W	YER134C	P40081	178 aa		0.89	□□□□□ -2.27
CTK3	YML112W	RIO2	P40160	425 aa	Known RBP	0.89	□□□□□ -2.27
CTK3	YML112W	NSE4	P43124	402 aa		0.89	□□□□□ -2.27
CTK3	YML112W	GNA1	P43577	159 aa	Predicted RBP	0.89	□□□□□ -2.27
CTK3	YML112W	YGR164W	P53291	111 aa		0.89	□□□□□ -2.27
CTK3	YML112W	YNR077C	P53758	84 aa		0.89	□□□□□ -2.27
CTK3	YML112W	YMR007W	Q03675	126 aa		0.89	□□□□□ -2.27
CTK3	YML112W	YMR103C	Q04436	120 aa		0.89	□□□□□ -2.27
CTK3	YML112W	SYM1	Q06563	197 aa		0.89	□□□□□ -2.27
CTK3	YML112W	ATP20	Q12233	115 aa		0.89	□□□□□ -2.27
CTK3	YML112W	DDP1	Q99321	188 aa	Known RBP	0.89	□□□□□ -2.27
CTK3	YML112W	LTE1	P07866	1435 aa		0.89	□□□□□ -2.27
CTK3	YML112W	ESC1	Q03661	1658 aa	Known RBP	0.88	□□□□□ -2.27
CTK3	YML112W	COX5B	P00425	151 aa		0.88	□□□□□ -2.27
CTK3	YML112W	URA5	P13298	226 aa	Known RBP	0.88	□□□□□ -2.27
CTK3	YML112W	HYP2	P23301	157 aa	Known RBP	0.88	□□□□□ -2.27
CTK3	YML112W	EMP24	P32803	203 aa	Known RBP	0.88	□□□□□ -2.27
CTK3	YML112W	RRT1	P38192	103 aa		0.88	□□□□□ -2.27
CTK3	YML112W	RPB11	P38902	120 aa		0.88	□□□□□ -2.27
CTK3	YML112W	YAL064W	P39711	94 aa		0.88	□□□□□ -2.27
CTK3	YML112W	SNU13	P39990	126 aa	Known RBP	0.88	□□□□□ -2.27
CTK3	YML112W	SPC25	P40014	221 aa		0.88	□□□□□ -2.27
CTK3	YML112W	PAM16	P42949	149 aa		0.88	□□□□□ -2.27
CTK3	YML112W	KNH1	P50112	268 aa		0.88	□□□□□ -2.27
CTK3	YML112W	ELC1	Q03071	99 aa		0.88	□□□□□ -2.27
CTK3	YML112W	YDR102C	Q03864	110 aa		0.88	□□□□□ -2.27
CTK3	YML112W	YMR082C	Q04276	118 aa		0.88	□□□□□ -2.27
CTK3	YML112W	YDL241W	Q07738	123 aa		0.88	□□□□□ -2.27
CTK3	YML112W	YOR385W	Q08909	290 aa		0.88	□□□□□ -2.27
CTK3	YML112W	RAD28	Q12021	506 aa		0.88	□□□□□ -2.27
CTK3	YML112W	KTI11	Q3E840	82 aa		0.88	□□□□□ -2.27
CTK3	YML112W	KSH1	Q8TGJ3	72 aa		0.88	□□□□□ -2.27
CTK3	YML112W	MSB2	P32334	1306 aa		0.88	□□□□□ -2.27
CTK3	YML112W	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.87	□□□□□ -2.27
CTK3	YML112W	LYS2	P07702	1392 aa		0.87	□□□□□ -2.27
CTK3	YML112W	RAD6	P06104	172 aa		0.87	□□□□□ -2.27
CTK3	YML112W	UBC4	P15731	148 aa		0.87	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 34.7 ms