RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS54	YDR027C	RPL33B	P41056	107 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	ARP3	P47117	449 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	YJR111C	P47148	283 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	MPC1	P53157	130 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	JAC1	P53193	184 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	YNR062C	P53748	327 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	ARL3	Q02804	198 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	NHP10	Q03435	203 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	PKR1	Q03880	122 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	FRQ1	Q06389	190 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	RFU1	Q08003	200 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	YPL225W	Q08971	146 aa	Known RBP	0.86	□□□□□ -2.27
VPS54	YDR027C	KTI11	Q3E840	82 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	YPR014C	Q6B0W2	109 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	YOR032W-A	Q8TGS1	66 aa		0.86	□□□□□ -2.27
VPS54	YDR027C	SPS2	P08459	502 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	URA5	P13298	226 aa	Known RBP	0.85	□□□□□ -2.27
VPS54	YDR027C	CNB1	P25296	175 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	UPS2	P35200	230 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	YKR041W	P36134	250 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	VMA7	P39111	118 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	RFC2	P40348	353 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	DOC1	P53068	250 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	YGR164W	P53291	111 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	APS2	Q00381	147 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	0.85	□□□□□ -2.27	not detected
VPS54	YDR027C	HRD1	Q08109	551 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	NSL1	Q12143	216 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	YHR086W-A	Q3E746	53 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	BOL1	Q3E793	110 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	FLO9	P39712	1322 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	ACP1	P32463	125 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	ERV15	P38312	142 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	AYR1	P40471	297 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	BOL2	P53082	120 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	ARO8	P53090	500 aa	Known RBP	0.85	□□□□□ -2.27
VPS54	YDR027C	NQM1	P53228	333 aa	Predicted RBP	0.85	□□□□□ -2.27
VPS54	YDR027C	YDR274C	P87283	123 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	YDR366C	P87287	132 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	CYT2	Q00873	224 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	UBC7	Q02159	165 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	GRX5	Q02784	150 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	FYV7	Q12247	151 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	ATP14	Q12349	124 aa		0.85	□□□□□ -2.27
VPS54	YDR027C	EFG1	Q3E705	233 aa	Known RBP	0.85	□□□□□ -2.27
VPS54	YDR027C	YDL085C-A	Q3E7B7	68 aa	Known RBP	0.85	□□□□□ -2.27
VPS54	YDR027C	NSP1	P14907	823 aa	Known RBP	0.84	□□□□□ -2.27
VPS54	YDR027C	STF2	P16965	84 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	MGT1	P26188	188 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	YER076C	P40049	302 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	YKE4	P40544	346 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	SER2	P42941	309 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	GPI14	P47088	403 aa	Known RBP	0.84	□□□□□ -2.27
VPS54	YDR027C	YLR460C	P54007	376 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	DAD3	P69850	94 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	AIM11	P87275	137 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	DYN2	Q02647	92 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	HNT1	Q04344	158 aa	Known RBP	0.84	□□□□□ -2.27
VPS54	YDR027C	UIP4	Q08926	304 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	YLR050C	Q12155	161 aa	Known RBP	0.84	□□□□□ -2.27
VPS54	YDR027C	SLH1	P53327	1967 aa	Known RBP	0.84	□□□□□ -2.27
VPS54	YDR027C	UBR1	P19812	1950 aa		0.84	□□□□□ -2.27
VPS54	YDR027C	ADK1	P07170	222 aa	Known RBP	0.84	□□□□□ -2.28
VPS54	YDR027C	CPA1	P07258	411 aa	Known RBP	0.84	□□□□□ -2.28
VPS54	YDR027C	DDI2	P0CH63	225 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	DDI3	P0CH64	225 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	SNF4	P12904	322 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	CKS1	P20486	150 aa	Known RBP	0.84	□□□□□ -2.28
VPS54	YDR027C	CLG1	P35190	452 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	UMP1	P38293	148 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	YBR220C	P38318	560 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	YHR022C	P38763	256 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	NVJ1	P38881	321 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	SKI6	P46948	246 aa	Predicted RBP	0.84	□□□□□ -2.28
VPS54	YDR027C	YJR015W	P47090	510 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	LSM8	P47093	109 aa	Known RBP	0.84	□□□□□ -2.28
VPS54	YDR027C	MPC3	P53311	146 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	YDR391C	Q04170	232 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	YPR114W	Q06107	315 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	YOR283W	Q12040	230 aa	Known RBP	0.84	□□□□□ -2.28
VPS54	YDR027C	YLR361C-A	Q3E795	98 aa		0.84	□□□□□ -2.28
VPS54	YDR027C	STP22	P25604	385 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	RPC19	P28000	142 aa	Known RBP	0.83	□□□□□ -2.28
VPS54	YDR027C	PAN3	P36102	679 aa	Predicted RBP	0.83	□□□□□ -2.28
VPS54	YDR027C	NRG2	P38082	220 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	YHL037C	P38733	133 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	AIM18	P38884	321 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	EDC3	P39998	551 aa	Known RBP	0.83	□□□□□ -2.28
VPS54	YDR027C	PAC10	P48363	199 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	AIM36	Q03798	255 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	YMR315W	Q04869	349 aa	Known RBP	0.83	□□□□□ -2.28
VPS54	YDR027C	YOL014W	Q08110	124 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	DGA1	Q08650	418 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	PST2	Q12335	198 aa	Known RBP	0.83	□□□□□ -2.28
VPS54	YDR027C	RAD6	P06104	172 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	SEC59	P20048	519 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	YBR285W	P38354	144 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	YEA4	P40004	342 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	YER121W	P40076	114 aa		0.83	□□□□□ -2.28
VPS54	YDR027C	TIR3	P40552	269 aa		0.83	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 25.8 ms