RNA–Protein interactions for RNA: ENST00000559397.5

TPM1-219, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 1,655 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-219ENST00000559397 ZNF667Q5HYK9 610 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 C10orf76Q5T2E6 689 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 PRPF38BQ5VTL8 546 aaKnown RBP17.66■□□□□ 0.42
TPM1-219ENST00000559397 LIMS2Q7Z4I7 341 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 PPM1KQ8N3J5 372 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 TXLNBQ8N3L3 684 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 SLC30A5Q8TAD4 765 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 FAXDC2Q96IV6 333 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 SUSD3Q96L08 255 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 SENP8Q96LD8 212 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 NKX2-4Q9H2Z4 354 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 SPG21Q9NZD8 308 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 POLIQ9UNA4 740 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 RWDD3Q9Y3V2 267 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 SNX9Q9Y5X1 595 aa17.66■□□□□ 0.42
TPM1-219ENST00000559397 I3L4J1 428 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 M0QZQ0 153 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 CASQ1P31415 396 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 BMS1Q14692 1282 aaKnown RBP17.65■□□□□ 0.42
TPM1-219ENST00000559397 LRIT3Q3SXY7 679 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 ZNF569Q5MCW4 686 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 FUT10Q6P4F1 479 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 RNF168Q8IYW5 571 aaPredicted RBP17.65■□□□□ 0.42
TPM1-219ENST00000559397 VN1R3Q9BXE9 311 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 GPR62Q9BZJ7 368 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 NIF3L1Q9GZT8 377 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 L2HGDHQ9H9P8 463 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 LUC7LQ9NQ29 371 aaKnown RBP17.65■□□□□ 0.42
TPM1-219ENST00000559397 NXF1Q9UBU9 619 aaKnown RBP17.65■□□□□ 0.42
TPM1-219ENST00000559397 GUCA1BQ9UMX6 200 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 VWA8A3KMH1 1905 aa17.65■□□□□ 0.42
TPM1-219ENST00000559397 C5orf67F2Z3F1 127 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 DDX3XO00571 662 aaKnown RBP eCLIP17.64■□□□□ 0.422e-8■■■■□ 19.9
TPM1-219ENST00000559397 CYB561D2O14569 222 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 RIOK3O14730 519 aaKnown RBP17.64■□□□□ 0.42
TPM1-219ENST00000559397 PPM1AP35813 382 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 ASPAP45381 313 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 ERVK-21P61565 698 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 PLCB3Q01970 1234 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 DSTYKQ6XUX3 929 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 VPS36Q86VN1 386 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 MYRIPQ8NFW9 859 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.64■□□□□ 0.42
TPM1-219ENST00000559397 PLVAPQ9BX97 442 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 NAGPAQ9UK23 515 aa17.64■□□□□ 0.42
TPM1-219ENST00000559397 SF3B1O75533 1304 aaKnown RBP eCLIP17.64■□□□□ 0.419e-6■■■■■ 68.9
TPM1-219ENST00000559397 P4HA1P13674 534 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 CTNNB1P35222 781 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 TNNC1P63316 161 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 CUL2Q13617 745 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 SOWAHAQ2M3V2 549 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 SLC35F6Q8N357 371 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 TOP6BLQ8N6T0 577 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 KLHL23Q8NBE8 558 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 TMEM169Q96HH4 297 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 SAMD11Q96NU1 681 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 TGS1Q96RS0 853 aaKnown RBP17.64■□□□□ 0.41
TPM1-219ENST00000559397 BCO2Q9BYV7 579 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 SDCBP2Q9H190 292 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 L1RE1Q9UN81 338 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 DUSP10Q9Y6W6 482 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 PLXNA4Q9HCM2 1894 aa17.64■□□□□ 0.41
TPM1-219ENST00000559397 TSC2P49815 1807 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 TRAPPC3O43617 180 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 FGF18O76093 207 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 CLSTN1O94985 981 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 RB1P06400 928 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 DNAJB2P25686 324 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 SMYD5Q6GMV2 418 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 DPH6Q7L8W6 267 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 TAS1R1Q7RTX1 841 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 LNX1Q8TBB1 728 aaPredicted RBP17.63■□□□□ 0.41
TPM1-219ENST00000559397 TIFAQ96CG3 184 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 ARID3AQ99856 593 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 SMYD3Q9H7B4 428 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 PCDHB8Q9UN66 801 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 CDH23Q9H251 3354 aa17.63■□□□□ 0.41
TPM1-219ENST00000559397 SYN3O14994 580 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 CYP11A1P05108 521 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 ODC1P11926 461 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 RAP1GAPP47736 663 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 CDH8P55286 799 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 ELAVL2Q12926 359 aaKnown RBP17.62■□□□□ 0.41
TPM1-219ENST00000559397 FAM171A1Q5VUB5 890 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 PPP2R2DQ66LE6 453 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 ALKBH5Q6P6C2 394 aaKnown RBP17.62■□□□□ 0.41
TPM1-219ENST00000559397 SCARA5Q6ZMJ2 495 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 DDX53Q86TM3 631 aaKnown RBP17.62■□□□□ 0.41
TPM1-219ENST00000559397 PDCL2Q8N4E4 241 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 MMS19Q96T76 1030 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 AGPAT1Q99943 283 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 CYP3A43Q9HB55 503 aa17.62■□□□□ 0.41
TPM1-219ENST00000559397 BTNL10A8MVZ5 291 aa17.61■□□□□ 0.41
TPM1-219ENST00000559397 HUS1O60921 280 aa17.61■□□□□ 0.41
TPM1-219ENST00000559397 TACC1O75410 805 aa17.61■□□□□ 0.41
TPM1-219ENST00000559397 SOD2P04179 222 aa17.61■□□□□ 0.41
TPM1-219ENST00000559397 FAM163BP0C2L3 166 aa17.61■□□□□ 0.41
TPM1-219ENST00000559397 TYMPP19971 482 aa17.61■□□□□ 0.41
TPM1-219ENST00000559397 FGFR3P22607 806 aa17.61■□□□□ 0.41
TPM1-219ENST00000559397 TBXAS1P24557 533 aaPredicted RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms