RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C YFL019CP43576 117 aa-0.02□□□□□ -2.41
PCF11YDR228C GPI14P47088 403 aaKnown RBP-0.02□□□□□ -2.41
PCF11YDR228C UPS1Q05776 175 aa-0.02□□□□□ -2.41
PCF11YDR228C YLR031WQ07978 186 aa-0.02□□□□□ -2.41
PCF11YDR228C DAS2Q12084 232 aa-0.02□□□□□ -2.41
PCF11YDR228C YMR030W-AQ3E760 96 aa-0.02□□□□□ -2.41
PCF11YDR228C YLR422WQ06409 1932 aa-0.03□□□□□ -2.41
PCF11YDR228C MRS1P07266 363 aa-0.03□□□□□ -2.41
PCF11YDR228C RFA3P26755 122 aaKnown RBP-0.03□□□□□ -2.41
PCF11YDR228C YGL230CP53074 147 aa-0.03□□□□□ -2.41
PCF11YDR228C ATP20Q12233 115 aa-0.03□□□□□ -2.41
PCF11YDR228C PIR1Q03178 341 aa-0.03□□□□□ -2.41
PCF11YDR228C YLR036CQ07986 203 aa-0.03□□□□□ -2.41
PCF11YDR228C YOR342CQ12182 319 aa-0.03□□□□□ -2.41
PCF11YDR228C YHR213W-BQ8TGK1 99 aa-0.03□□□□□ -2.41
PCF11YDR228C CCS1P40202 249 aaKnown RBP-0.04□□□□□ -2.42
PCF11YDR228C RFC4P40339 323 aaKnown RBP-0.04□□□□□ -2.42
PCF11YDR228C DML1Q03652 475 aa-0.04□□□□□ -2.42
PCF11YDR228C DGK1Q12382 290 aa-0.04□□□□□ -2.42
PCF11YDR228C COQ1P18900 473 aa-0.05□□□□□ -2.42
PCF11YDR228C MSS2P40990 351 aa-0.05□□□□□ -2.42
PCF11YDR228C RRT1P38192 103 aa-0.06□□□□□ -2.42
PCF11YDR228C YNL184CP53876 108 aa-0.06□□□□□ -2.42
PCF11YDR228C ATG41Q12048 136 aa-0.06□□□□□ -2.42
PCF11YDR228C RPS24AP0CX31 135 aaKnown RBP-0.07□□□□□ -2.42
PCF11YDR228C RPS24BP0CX32 135 aaKnown RBP-0.07□□□□□ -2.42
PCF11YDR228C NTG1P31378 399 aa-0.07□□□□□ -2.42
PCF11YDR228C NSA2P40078 261 aaKnown RBP-0.07□□□□□ -2.42
PCF11YDR228C NRK1P53915 240 aa-0.07□□□□□ -2.42
PCF11YDR228C YKR005CQ02203 525 aa-0.07□□□□□ -2.42
PCF11YDR228C YLR412C-AQ3E742 68 aa-0.07□□□□□ -2.42
PCF11YDR228C YOR381W-AQ3E804 55 aa-0.07□□□□□ -2.42
PCF11YDR228C YRA2P36036 203 aaKnown RBP RIP-Chip data-0.08□□□□□ -2.42not detected
PCF11YDR228C RUD3Q12234 484 aaKnown RBP-0.08□□□□□ -2.42
PCF11YDR228C TMA22P47089 198 aaPredicted RBP-0.09□□□□□ -2.42
PCF11YDR228C ARO80Q04052 950 aa-0.09□□□□□ -2.42
PCF11YDR228C YCL012CQ8J0M4 134 aa-0.09□□□□□ -2.42
PCF11YDR228C NSG1P38837 291 aa-0.1□□□□□ -2.42
PCF11YDR228C AVO2Q04749 426 aa-0.1□□□□□ -2.42
PCF11YDR228C PRE1P22141 198 aaKnown RBP-0.1□□□□□ -2.43
PCF11YDR228C PTC1P35182 281 aa-0.1□□□□□ -2.43
PCF11YDR228C POG1P40473 351 aa-0.1□□□□□ -2.43
PCF11YDR228C FCY1Q12178 158 aa-0.1□□□□□ -2.43
PCF11YDR228C MMS2P53152 137 aa-0.11□□□□□ -2.43
PCF11YDR228C PGA1P53896 198 aa-0.11□□□□□ -2.43
PCF11YDR228C RIM9Q04734 239 aa-0.11□□□□□ -2.43
PCF11YDR228C YLR307C-AQ3E825 87 aa-0.11□□□□□ -2.43
PCF11YDR228C HTB1P02293 131 aaKnown RBP-0.12□□□□□ -2.43
PCF11YDR228C HTB2P02294 131 aa-0.12□□□□□ -2.43
PCF11YDR228C ARG80P07249 177 aa-0.12□□□□□ -2.43
PCF11YDR228C HHT1P61830 136 aa-0.12□□□□□ -2.43
PCF11YDR228C GAL83Q04739 417 aa-0.12□□□□□ -2.43
PCF11YDR228C KIN28P06242 306 aa-0.12□□□□□ -2.43
PCF11YDR228C SBH1P52870 82 aa-0.12□□□□□ -2.43
PCF11YDR228C GRX5Q02784 150 aa-0.12□□□□□ -2.43
PCF11YDR228C RIF1P29539 1916 aa-0.13□□□□□ -2.43
PCF11YDR228C ROM2P51862 1356 aaKnown RBP-0.13□□□□□ -2.43
PCF11YDR228C RPL43AP0CX25 92 aaKnown RBP-0.13□□□□□ -2.43
PCF11YDR228C RPL43BP0CX26 92 aa-0.13□□□□□ -2.43
PCF11YDR228C ADE1P27616 306 aa-0.14□□□□□ -2.43
PCF11YDR228C YNL200CP40165 246 aaKnown RBP-0.14□□□□□ -2.43
PCF11YDR228C CIN5P40917 295 aa-0.14□□□□□ -2.43
PCF11YDR228C APS3P47064 194 aa-0.14□□□□□ -2.43
PCF11YDR228C CCC1P47818 322 aa-0.14□□□□□ -2.43
PCF11YDR228C HSP30P25619 332 aa-0.14□□□□□ -2.43
PCF11YDR228C FYV4P38783 130 aaPredicted RBP-0.14□□□□□ -2.43
PCF11YDR228C YMR141CP40211 102 aa-0.14□□□□□ -2.43
PCF11YDR228C PGA2P53903 129 aa-0.14□□□□□ -2.43
PCF11YDR228C IGO2Q9P305 131 aa-0.14□□□□□ -2.43
PCF11YDR228C YLR157W-EP0CF00 54 aa-0.15□□□□□ -2.43
PCF11YDR228C CLG1P35190 452 aa-0.15□□□□□ -2.43
PCF11YDR228C PAC10P48363 199 aa-0.15□□□□□ -2.43
PCF11YDR228C GPI17Q04080 534 aa-0.15□□□□□ -2.43
PCF11YDR228C SEC14P24280 304 aaKnown RBP-0.16□□□□□ -2.43
PCF11YDR228C GLC8P41818 229 aa-0.16□□□□□ -2.43
PCF11YDR228C YPR127WQ06494 345 aa-0.16□□□□□ -2.43
PCF11YDR228C QCR7P00128 127 aa-0.16□□□□□ -2.44
PCF11YDR228C SEN15Q04675 128 aa-0.16□□□□□ -2.44
PCF11YDR228C YOL024WQ08172 172 aa-0.16□□□□□ -2.44
PCF11YDR228C MPD1Q12404 318 aaKnown RBP-0.16□□□□□ -2.44
PCF11YDR228C YDL085C-AQ3E7B7 68 aaKnown RBP-0.16□□□□□ -2.44
PCF11YDR228C YPR014CQ6B0W2 109 aa-0.16□□□□□ -2.44
PCF11YDR228C YBR027CP38220 110 aa-0.17□□□□□ -2.44
PCF11YDR228C GCY1P14065 312 aaKnown RBP RIP-Chip data-0.18□□□□□ -2.44not detected
PCF11YDR228C CPR5P35176 225 aa-0.18□□□□□ -2.44
PCF11YDR228C RTC4P53850 401 aa-0.18□□□□□ -2.44
PCF11YDR228C MGR2Q02889 113 aa-0.18□□□□□ -2.44
PCF11YDR228C MRPS17Q03246 237 aaPredicted RBP-0.18□□□□□ -2.44
PCF11YDR228C GIS3Q12418 502 aa-0.18□□□□□ -2.44
PCF11YDR228C RPS22AP0C0W1 130 aaKnown RBP-0.18□□□□□ -2.44
PCF11YDR228C YNL122CP53921 115 aaPredicted RBP-0.18□□□□□ -2.44
PCF11YDR228C YDL157CQ12082 118 aa-0.18□□□□□ -2.44
PCF11YDR228C RPS22BQ3E7Y3 130 aaKnown RBP-0.18□□□□□ -2.44
PCF11YDR228C RPS25BP0C0T4 108 aaKnown RBP-0.19□□□□□ -2.44
PCF11YDR228C YML079WQ03629 201 aa-0.19□□□□□ -2.44
PCF11YDR228C YOR072WQ08486 104 aa-0.19□□□□□ -2.44
PCF11YDR228C RPS25AQ3E792 108 aaPredicted RBP-0.19□□□□□ -2.44
PCF11YDR228C CBF1P17106 351 aa-0.2□□□□□ -2.44
PCF11YDR228C ATG8P38182 117 aaRIP-Chip data-0.2□□□□□ -2.44not detected
PCF11YDR228C YEL073CP39974 107 aa-0.2□□□□□ -2.44
Retrieved 100 of 5,963 RNA–protein pairs in 23.2 ms