RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS41YDR080W LST8P41318 303 aa1.8□□□□□ -2.12
VPS41YDR080W CPD1P53314 239 aa1.8□□□□□ -2.12
VPS41YDR080W ERV25P54837 211 aaKnown RBP1.8□□□□□ -2.12
VPS41YDR080W YOS1Q3E834 85 aa1.8□□□□□ -2.12
VPS41YDR080W TRP1P00912 224 aa1.8□□□□□ -2.12
VPS41YDR080W RIB5P38145 238 aa1.8□□□□□ -2.12
VPS41YDR080W RPA34P47006 233 aaPredicted RBP1.8□□□□□ -2.12
VPS41YDR080W HAL1Q01766 294 aa1.8□□□□□ -2.12
VPS41YDR080W RCF1Q03713 159 aa1.8□□□□□ -2.12
VPS41YDR080W ATG31Q12421 196 aa1.8□□□□□ -2.12
VPS41YDR080W YOR192C-CQ3E736 78 aa1.8□□□□□ -2.12
VPS41YDR080W MET17P06106 444 aa1.79□□□□□ -2.12
VPS41YDR080W CDC31P06704 161 aaKnown RBP1.79□□□□□ -2.12
VPS41YDR080W FUN26P31381 517 aa1.79□□□□□ -2.12
VPS41YDR080W VMA5P31412 392 aaKnown RBP1.79□□□□□ -2.12
VPS41YDR080W ERG24P32462 438 aaKnown RBP1.79□□□□□ -2.12
VPS41YDR080W VAM7P32912 316 aa1.79□□□□□ -2.12
VPS41YDR080W RIB7P33312 244 aa1.79□□□□□ -2.12
VPS41YDR080W RTC3P38804 111 aaPredicted RBP1.79□□□□□ -2.12
VPS41YDR080W POR2P40478 281 aa1.79□□□□□ -2.12
VPS41YDR080W HXT14P42833 540 aa1.79□□□□□ -2.12
VPS41YDR080W SNX4P47057 423 aa1.79□□□□□ -2.12
VPS41YDR080W GPI14P47088 403 aaKnown RBP1.79□□□□□ -2.12
VPS41YDR080W ORM1P53224 222 aa1.79□□□□□ -2.12
VPS41YDR080W SWT21P53873 357 aaPredicted RBP1.79□□□□□ -2.12
VPS41YDR080W CTF19Q02732 369 aa1.79□□□□□ -2.12
VPS41YDR080W ASR1Q06834 288 aa1.79□□□□□ -2.12
VPS41YDR080W DTD1Q07648 150 aaKnown RBP1.79□□□□□ -2.12
VPS41YDR080W TIM18Q08749 192 aa1.79□□□□□ -2.12
VPS41YDR080W MED4Q12343 284 aa1.79□□□□□ -2.12
VPS41YDR080W VMA22P38784 181 aa1.79□□□□□ -2.12
VPS41YDR080W SNF11P38956 169 aa1.79□□□□□ -2.12
VPS41YDR080W MIC26P50087 233 aa1.79□□□□□ -2.12
VPS41YDR080W SLX9P53251 210 aaPredicted RBP1.79□□□□□ -2.12
VPS41YDR080W SPO19Q03029 223 aa1.79□□□□□ -2.12
VPS41YDR080W LDS2Q08218 356 aa1.79□□□□□ -2.12
VPS41YDR080W TRM10Q12400 293 aa1.79□□□□□ -2.12
VPS41YDR080W VMA8P32610 256 aaKnown RBP1.78□□□□□ -2.12
VPS41YDR080W PDX3P38075 228 aaKnown RBP1.78□□□□□ -2.12
VPS41YDR080W NVJ1P38881 321 aa1.78□□□□□ -2.12
VPS41YDR080W SNL1P40548 159 aa1.78□□□□□ -2.12
VPS41YDR080W YJR011CP47086 261 aaPredicted RBP1.78□□□□□ -2.12
VPS41YDR080W YMR181CQ03231 154 aa1.78□□□□□ -2.12
VPS41YDR080W YPR063CQ12160 140 aa1.78□□□□□ -2.12
VPS41YDR080W YGL258W-AQ3E740 77 aa1.78□□□□□ -2.12
VPS41YDR080W RPS11AP0CX47 156 aaKnown RBP1.78□□□□□ -2.12
VPS41YDR080W RPS11BP0CX48 156 aaKnown RBP1.78□□□□□ -2.12
VPS41YDR080W MIR1P23641 311 aaKnown RBP1.78□□□□□ -2.12
VPS41YDR080W FPR2P32472 135 aa1.78□□□□□ -2.12
VPS41YDR080W MIG3P39943 394 aa1.78□□□□□ -2.12
VPS41YDR080W IRC18P47056 224 aa1.78□□□□□ -2.12
VPS41YDR080W CAX4P53223 239 aa1.78□□□□□ -2.12
VPS41YDR080W YOL118CQ08259 102 aa1.78□□□□□ -2.12
VPS41YDR080W YPR013CQ12145 317 aa1.78□□□□□ -2.12
VPS41YDR080W SHE2P36068 246 aaKnown RBP RIP-Chip data1.77□□□□□ -2.13not detected
VPS41YDR080W RTT105P40063 208 aa1.77□□□□□ -2.13
VPS41YDR080W MSS2P40990 351 aa1.77□□□□□ -2.13
VPS41YDR080W BXI1P48558 297 aa1.77□□□□□ -2.13
VPS41YDR080W YNL146C-AQ3E7Z1 64 aa1.77□□□□□ -2.13
VPS41YDR080W RRT1P38192 103 aa1.77□□□□□ -2.13
VPS41YDR080W SSO2P39926 295 aa1.77□□□□□ -2.13
VPS41YDR080W PCL7P40186 285 aa1.77□□□□□ -2.13
VPS41YDR080W YMR252CQ04814 134 aa1.77□□□□□ -2.13
VPS41YDR080W AEP3Q12089 606 aa1.77□□□□□ -2.13
VPS41YDR080W AGC1Q12482 902 aa1.77□□□□□ -2.13
VPS41YDR080W DCP1Q12517 231 aaPredicted RBP1.77□□□□□ -2.13
VPS41YDR080W YBL010CP32788 280 aa1.77□□□□□ -2.13
VPS41YDR080W AST1P35183 429 aa1.77□□□□□ -2.13
VPS41YDR080W ATP3P38077 311 aaKnown RBP1.77□□□□□ -2.13
VPS41YDR080W FMC1P40491 155 aa1.77□□□□□ -2.13
VPS41YDR080W LSM1P47017 172 aaKnown RBP1.77□□□□□ -2.13
VPS41YDR080W YAE1P47118 141 aaPredicted RBP1.77□□□□□ -2.13
VPS41YDR080W HAM1P47119 197 aaKnown RBP1.77□□□□□ -2.13
VPS41YDR080W MRPS8Q03799 155 aa1.77□□□□□ -2.13
VPS41YDR080W FEX1Q08913 375 aa1.77□□□□□ -2.13
VPS41YDR080W FEX2Q08991 375 aa1.77□□□□□ -2.13
VPS41YDR080W YGK3Q12222 375 aaPredicted RBP1.77□□□□□ -2.13
VPS41YDR080W RPL2AP0CX45 254 aaKnown RBP1.76□□□□□ -2.13
VPS41YDR080W RPL2BP0CX46 254 aaKnown RBP1.76□□□□□ -2.13
VPS41YDR080W URA6P15700 204 aa1.76□□□□□ -2.13
VPS41YDR080W MRS4P23500 304 aa1.76□□□□□ -2.13
VPS41YDR080W NPL6P32832 435 aa1.76□□□□□ -2.13
VPS41YDR080W YPT31P38555 223 aaKnown RBP1.76□□□□□ -2.13
VPS41YDR080W FMP33P46998 180 aa1.76□□□□□ -2.13
VPS41YDR080W YJR085CP47131 105 aaKnown RBP1.76□□□□□ -2.13
VPS41YDR080W CWC25P53854 179 aaKnown RBP1.76□□□□□ -2.13
VPS41YDR080W GRX3Q03835 250 aa1.76□□□□□ -2.13
VPS41YDR080W YMR244WQ04018 355 aa1.76□□□□□ -2.13
VPS41YDR080W UBA3Q99344 299 aa1.76□□□□□ -2.13
VPS41YDR080W JLP2P40206 208 aa1.76□□□□□ -2.13
VPS41YDR080W YCR075W-AQ3E830 75 aa1.76□□□□□ -2.13
VPS41YDR080W YBL071CP38185 102 aa1.75□□□□□ -2.13
VPS41YDR080W SIM1P40472 476 aa1.75□□□□□ -2.13
VPS41YDR080W YJL027CP47063 138 aaPredicted RBP1.75□□□□□ -2.13
VPS41YDR080W FMP48P53233 369 aa1.75□□□□□ -2.13
VPS41YDR080W YIP3P53633 176 aa1.75□□□□□ -2.13
VPS41YDR080W YIF1P53845 314 aaKnown RBP1.75□□□□□ -2.13
VPS41YDR080W OCA2P53949 197 aa1.75□□□□□ -2.13
VPS41YDR080W MEH1Q02205 184 aa1.75□□□□□ -2.13
VPS41YDR080W SNO1Q03144 224 aa1.75□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 22.5 ms