RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	BCLAF3	A2AJT9	711 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	CCDC169	A6NNP5	214 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	XPOT	O43592	962 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	TOM1L1	O75674	476 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	FDPS	P14324	419 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	TYMP	P19971	482 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	DDX6	P26196	483 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	TUFM	P49411	452 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	PEX3	P56589	373 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	FOXC1	Q12948	553 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	RUNX3	Q13761	415 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	TCEAL6	Q6IPX3	200 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	FSTL4	Q6MZW2	842 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	PKN3	Q6P5Z2	889 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	SYT13	Q7L8C5	426 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	GATA6	Q92908	595 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	TCEAL3	Q969E4	200 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	TSPAN18	Q96SJ8	248 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	TIPIN	Q9BVW5	301 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	TARS2	Q9BW92	718 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	KMT5A	Q9NQR1	393 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	KCNG1	Q9UIX4	513 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	UBQLN1	Q9UMX0	589 aa	Known RBP	13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	EML5	Q05BV3	1969 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	ATRX	P46100	2492 aa		13.52	□□□□□ -0.25
CAPN1-223	ENST00000533079	C4orf47	A7E2U8	309 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	SOBP	A7XYQ1	873 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	MEFV	O15553	781 aa	Predicted RBP	13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	RNF40	O75150	1001 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	APBB3	O95704	486 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	OR4Q2	P0C623	313 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	ODC1	P11926	461 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	CCT6A	P40227	531 aa	Known RBP	13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	CREB5	Q02930	508 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	STRN3	Q13033	797 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	BECN1	Q14457	450 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	SLC10A6	Q3KNW5	377 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	SH3PXD2A	Q5TCZ1	1133 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	OVOS1	Q6IE37	1185 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	ARMCX5	Q6P1M9	558 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	ZPBP2	Q6X784	338 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	TAS1R3	Q7RTX0	852 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	CMTM8	Q8IZV2	173 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	CCDC26	Q8TAB7	109 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	C2orf15	Q8WU43	125 aa	Known RBP	13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	FAM83C	Q9BQN1	747 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	TMEM9B	Q9NQ34	198 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	SPAG17	Q6Q759	2223 aa		13.51	□□□□□ -0.25
CAPN1-223	ENST00000533079	KIAA1549L	Q6ZVL6	1849 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	SRRM3	A6NNA2	597 aa	Predicted RBP	13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	HOXC13	P31276	330 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	AVPR1A	P37288	418 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	FXR2	P51116	673 aa	Known RBP eCLIP	13.5	□□□□□ -0.25	6e-7	■□□□□ 9
CAPN1-223	ENST00000533079	PPP2R3A	Q06190	1150 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	MCL1	Q07820	350 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	SMARCB1	Q12824	385 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	KYAT1	Q16773	422 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	DSTYK	Q6XUX3	929 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	ZCCHC14	Q8WYQ9	949 aa	Known RBP	13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	GTF3C6	Q969F1	213 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	CHFR	Q96EP1	664 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	HHIP	Q96QV1	700 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	RAB34	Q9BZG1	259 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	ANKFY1	Q9P2R3	1169 aa		13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.5	□□□□□ -0.25
CAPN1-223	ENST00000533079	TTC26	A0AVF1	554 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	GIPC1	O14908	333 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	KHNYN	O15037	678 aa	Known RBP	13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	CLDN3	O15551	220 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	HIP1R	O75146	1068 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	LARGE1	O95461	756 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	EGF	P01133	1207 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	CLTA	P09496	248 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	HARS	P12081	509 aa	Known RBP	13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	HOXB3	P14651	431 aa	Predicted RBP	13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	CYP4F8	P98187	520 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	BFSP1	Q12934	665 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	PDGFRL	Q15198	375 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	SAFB	Q15424	915 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	ZBTB6	Q15916	424 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	PMS2CL	Q68D20	193 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	DAW1	Q8N136	415 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	ATAD1	Q8NBU5	361 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	SNX21	Q969T3	373 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	NTPCR	Q9BSD7	190 aa	Known RBP	13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	SCNM1	Q9BWG6	230 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	IL21	Q9HBE4	155 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	HPS4	Q9NQG7	708 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	GKN1	Q9NS71	199 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	DDX19A	Q9NUU7	478 aa	Known RBP	13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	DSE	Q9UL01	958 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	KIAA1024	Q9UPX6	916 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	SLC27A5	Q9Y2P5	690 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	NEUROG3	Q9Y4Z2	214 aa		13.49	□□□□□ -0.25
CAPN1-223	ENST00000533079	CYP11A1	P05108	521 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	CXCL8	P10145	99 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	ATF6	P18850	670 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	MAPK7	Q13164	816 aa		13.48	□□□□□ -0.25
CAPN1-223	ENST00000533079	DMC1	Q14565	340 aa		13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms