RNA–Protein interactions for RNA: YLR176C

RFX1, Transcript of Major transcriptional repressor of DNA-damage-regulated genes, yeast

Gene RFX1, Length 2,436 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RFX1	YLR176C	AIM2	P39721	246 aa		0.55	□□□□□ -2.32
RFX1	YLR176C	YMR252C	Q04814	134 aa		0.55	□□□□□ -2.32
RFX1	YLR176C	YAR023C	D6VPM8	179 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	MRS1	P07266	363 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	YEL008W	P40001	126 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	YER134C	P40081	178 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	RFC4	P40339	323 aa	Known RBP	0.54	□□□□□ -2.32
RFX1	YLR176C	SKI6	P46948	246 aa	Predicted RBP	0.54	□□□□□ -2.32
RFX1	YLR176C	ARP3	P47117	449 aa	Known RBP	0.54	□□□□□ -2.32
RFX1	YLR176C	TIM11	P81449	96 aa	Predicted RBP	0.54	□□□□□ -2.32
RFX1	YLR176C	YMR295C	Q03559	197 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	DYN3	Q04949	312 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	RNH202	Q05635	350 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	PRP11	Q07350	266 aa	Predicted RBP	0.54	□□□□□ -2.32
RFX1	YLR176C	YOL014W	Q08110	124 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	FIT2	Q08906	153 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	YCL012C	Q8J0M4	134 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	COX8	P04039	78 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	MATALPHA2	P0CY08	210 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	HMLALPHA2	P0CY09	210 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	RPL37B	P51402	88 aa	Known RBP	0.54	□□□□□ -2.32
RFX1	YLR176C	MMS2	P53152	137 aa		0.54	□□□□□ -2.32
RFX1	YLR176C	YPK2	P18961	677 aa		0.53	□□□□□ -2.32
RFX1	YLR176C	ASF2	P32448	525 aa	Predicted RBP	0.53	□□□□□ -2.32
RFX1	YLR176C	HPA3	P39979	161 aa		0.53	□□□□□ -2.32
RFX1	YLR176C	YJR111C	P47148	283 aa	Known RBP	0.53	□□□□□ -2.32
RFX1	YLR176C	DAD4	P69851	72 aa		0.53	□□□□□ -2.32
RFX1	YLR176C	YMR226C	Q05016	267 aa	Known RBP	0.53	□□□□□ -2.32
RFX1	YLR176C	YPR013C	Q12145	317 aa		0.53	□□□□□ -2.32
RFX1	YLR176C	YML100W-A	Q8TGT0	57 aa		0.53	□□□□□ -2.32
RFX1	YLR176C	RPB4	P20433	221 aa	Predicted RBP	0.53	□□□□□ -2.33
RFX1	YLR176C	MTW1	P39731	289 aa		0.53	□□□□□ -2.33
RFX1	YLR176C	NTG1	P31378	399 aa		0.52	□□□□□ -2.33
RFX1	YLR176C	RPB7	P34087	171 aa		0.52	□□□□□ -2.33
RFX1	YLR176C	PAM17	P36147	197 aa		0.52	□□□□□ -2.33
RFX1	YLR176C	SHH3	Q04487	196 aa		0.52	□□□□□ -2.33
RFX1	YLR176C	YER188C-A	P0C0V2	99 aa		0.52	□□□□□ -2.33
RFX1	YLR176C	PHO85	P17157	305 aa		0.52	□□□□□ -2.33
RFX1	YLR176C	NOP19	P53317	196 aa	Predicted RBP	0.52	□□□□□ -2.33
RFX1	YLR176C	YNL033W	P53964	284 aa		0.52	□□□□□ -2.33
RFX1	YLR176C	UPS3	Q04006	179 aa		0.52	□□□□□ -2.33
RFX1	YLR176C	NAT3	Q06504	195 aa		0.52	□□□□□ -2.33
RFX1	YLR176C	ABP140	Q08641	628 aa	Known RBP	0.52	□□□□□ -2.33
RFX1	YLR176C	IGO2	Q9P305	131 aa		0.52	□□□□□ -2.33
RFX1	YLR176C	QCR7	P00128	127 aa		0.51	□□□□□ -2.33
RFX1	YLR176C	MGT1	P26188	188 aa		0.51	□□□□□ -2.33
RFX1	YLR176C	YKT6	P36015	200 aa	Known RBP	0.51	□□□□□ -2.33
RFX1	YLR176C	UBC12	P52491	188 aa		0.51	□□□□□ -2.33
RFX1	YLR176C	THG1	P53215	237 aa	Known RBP	0.51	□□□□□ -2.33
RFX1	YLR176C	YNL184C	P53876	108 aa		0.51	□□□□□ -2.33
RFX1	YLR176C	YLR460C	P54007	376 aa		0.51	□□□□□ -2.33
RFX1	YLR176C	MRPS17	Q03246	237 aa	Predicted RBP	0.51	□□□□□ -2.33
RFX1	YLR176C	YMR253C	Q04835	414 aa		0.51	□□□□□ -2.33
RFX1	YLR176C	YLR036C	Q07986	203 aa		0.51	□□□□□ -2.33
RFX1	YLR176C	COA3	Q3E7B2	85 aa		0.51	□□□□□ -2.33
RFX1	YLR176C	TIR1	P10863	254 aa		0.5	□□□□□ -2.33
RFX1	YLR176C	ARO7	P32178	256 aa		0.5	□□□□□ -2.33
RFX1	YLR176C	SFK1	P35735	353 aa		0.5	□□□□□ -2.33
RFX1	YLR176C	CUP9	P41817	306 aa		0.5	□□□□□ -2.33
RFX1	YLR176C	YLR031W	Q07978	186 aa		0.5	□□□□□ -2.33
RFX1	YLR176C	SLH1	P53327	1967 aa	Known RBP	0.5	□□□□□ -2.33
RFX1	YLR176C	ACC1	Q00955	2233 aa	Known RBP	0.5	□□□□□ -2.33
RFX1	YLR176C	GET4	Q12125	312 aa		0.5	□□□□□ -2.33
RFX1	YLR176C	SNF4	P12904	322 aa		0.49	□□□□□ -2.33
RFX1	YLR176C	GSP2	P32836	220 aa	Known RBP	0.49	□□□□□ -2.33
RFX1	YLR176C	SPC25	P40014	221 aa		0.49	□□□□□ -2.33
RFX1	YLR176C	YFL019C	P43576	117 aa		0.49	□□□□□ -2.33
RFX1	YLR176C	ALB1	P47019	175 aa	Predicted RBP	0.49	□□□□□ -2.33
RFX1	YLR176C	DIG2	Q03373	323 aa	Known RBP	0.49	□□□□□ -2.33
RFX1	YLR176C	VPS71	Q03433	280 aa		0.49	□□□□□ -2.33
RFX1	YLR176C	AIM36	Q03798	255 aa		0.49	□□□□□ -2.33
RFX1	YLR176C	FMP23	P38231	175 aa		0.49	□□□□□ -2.33
RFX1	YLR176C	TDA4	P47153	279 aa		0.49	□□□□□ -2.33
RFX1	YLR176C	ARO80	Q04052	950 aa		0.49	□□□□□ -2.33
RFX1	YLR176C	FAS1	P07149	2051 aa	Known RBP	0.49	□□□□□ -2.33
RFX1	YLR176C	IDP1	P21954	428 aa	Known RBP	0.48	□□□□□ -2.33
RFX1	YLR176C	STP22	P25604	385 aa		0.48	□□□□□ -2.33
RFX1	YLR176C	PDS1	P40316	373 aa	Predicted RBP	0.48	□□□□□ -2.33
RFX1	YLR176C	GPI14	P47088	403 aa	Known RBP	0.48	□□□□□ -2.33
RFX1	YLR176C	MET31	Q03081	177 aa		0.48	□□□□□ -2.33
RFX1	YLR176C	YMR315W	Q04869	349 aa	Known RBP	0.48	□□□□□ -2.33
RFX1	YLR176C	TMA22	P47089	198 aa	Predicted RBP	0.48	□□□□□ -2.33
RFX1	YLR176C	CGR1	P53188	120 aa		0.48	□□□□□ -2.33
RFX1	YLR176C	YOL024W	Q08172	172 aa		0.48	□□□□□ -2.33
RFX1	YLR176C	SEN2	P16658	377 aa		0.47	□□□□□ -2.33
RFX1	YLR176C	RTC4	P53850	401 aa		0.47	□□□□□ -2.33
RFX1	YLR176C	YDR391C	Q04170	232 aa		0.47	□□□□□ -2.33
RFX1	YLR176C	FYV12	Q08559	129 aa		0.47	□□□□□ -2.33
RFX1	YLR176C	ADF1	Q2V2Q1	113 aa		0.47	□□□□□ -2.33
RFX1	YLR176C	YCR023C	P25351	611 aa		0.47	□□□□□ -2.33
RFX1	YLR176C	MRPL15	P36523	253 aa		0.47	□□□□□ -2.33
RFX1	YLR176C	CWC21	Q03375	135 aa	Known RBP	0.47	□□□□□ -2.33
RFX1	YLR176C	RRP17	Q04031	235 aa	Predicted RBP	0.47	□□□□□ -2.33
RFX1	YLR176C	LCL2	Q08045	131 aa		0.47	□□□□□ -2.33
RFX1	YLR176C	PST2	Q12335	198 aa	Known RBP	0.47	□□□□□ -2.33
RFX1	YLR176C	RAD9	P14737	1309 aa		0.47	□□□□□ -2.33
RFX1	YLR176C	STF2	P16965	84 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	TAH1	P25638	111 aa	Predicted RBP	0.46	□□□□□ -2.34
RFX1	YLR176C	ADE1	P27616	306 aa		0.46	□□□□□ -2.34
RFX1	YLR176C	SBH1	P52870	82 aa		0.46	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 28.1 ms