RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	YMD8	Q03697	442 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	YLR283W	Q05867	314 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	GRE1	Q08969	168 aa		3.61	□□□□□ -1.83
CAF16	YFL028C	PST2	Q12335	198 aa	Known RBP	3.61	□□□□□ -1.83
CAF16	YFL028C	POP8	P38208	133 aa		3.6	□□□□□ -1.83
CAF16	YFL028C	ARN2	P38724	620 aa		3.6	□□□□□ -1.83
CAF16	YFL028C	ASP1	P38986	381 aa	Predicted RBP	3.6	□□□□□ -1.83
CAF16	YFL028C	PDS1	P40316	373 aa	Predicted RBP	3.6	□□□□□ -1.83
CAF16	YFL028C	MSS2	P40990	351 aa		3.6	□□□□□ -1.83
CAF16	YFL028C	BRR6	P53062	197 aa		3.6	□□□□□ -1.83
CAF16	YFL028C	PGA1	P53896	198 aa		3.6	□□□□□ -1.83
CAF16	YFL028C	PEX10	Q05568	337 aa		3.6	□□□□□ -1.83
CAF16	YFL028C	YPR147C	Q06522	304 aa	Known RBP	3.6	□□□□□ -1.83
CAF16	YFL028C	RPL43A	P0CX25	92 aa	Known RBP	3.59	□□□□□ -1.83
CAF16	YFL028C	RPL43B	P0CX26	92 aa		3.59	□□□□□ -1.83
CAF16	YFL028C	PPA2	P28239	310 aa		3.59	□□□□□ -1.83
CAF16	YFL028C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	3.59	□□□□□ -1.83	not detected
CAF16	YFL028C	DOA4	P32571	926 aa		3.59	□□□□□ -1.83
CAF16	YFL028C	IPT1	P38954	527 aa		3.59	□□□□□ -1.83
CAF16	YFL028C	BDH1	P39714	382 aa		3.59	□□□□□ -1.83
CAF16	YFL028C	NQM1	P53228	333 aa	Predicted RBP	3.59	□□□□□ -1.83
CAF16	YFL028C	ACT1	P60010	375 aa	Known RBP	3.59	□□□□□ -1.83
CAF16	YFL028C	SNZ1	Q03148	297 aa		3.59	□□□□□ -1.83
CAF16	YFL028C	TLG1	Q03322	224 aa		3.59	□□□□□ -1.83
CAF16	YFL028C	CSM4	Q08955	156 aa		3.59	□□□□□ -1.83
CAF16	YFL028C	YOR289W	Q12012	251 aa	Predicted RBP	3.59	□□□□□ -1.83
CAF16	YFL028C	MET2	P08465	486 aa		3.58	□□□□□ -1.84
CAF16	YFL028C	PHO80	P20052	293 aa		3.58	□□□□□ -1.84
CAF16	YFL028C	IDP1	P21954	428 aa	Known RBP	3.58	□□□□□ -1.84
CAF16	YFL028C	HOM6	P31116	359 aa	Known RBP	3.58	□□□□□ -1.84
CAF16	YFL028C	MRPS9	P38120	278 aa		3.58	□□□□□ -1.84
CAF16	YFL028C	AVT6	P40074	448 aa		3.58	□□□□□ -1.84
CAF16	YFL028C	OTU1	P43558	301 aa		3.58	□□□□□ -1.84
CAF16	YFL028C	NIP7	Q08962	181 aa	Known RBP	3.58	□□□□□ -1.84
CAF16	YFL028C	YHR214C-E	Q8TGK0	99 aa		3.58	□□□□□ -1.84
CAF16	YFL028C	MED11	Q99278	115 aa		3.58	□□□□□ -1.84
CAF16	YFL028C	KIN28	P06242	306 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	RPS5	P26783	225 aa	Known RBP	3.57	□□□□□ -1.84
CAF16	YFL028C	ECM4	P36156	370 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	MRPL39	P36533	70 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	YBR063C	P38083	404 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	MAL32	P38158	584 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	GOS1	P38736	223 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	ADO1	P47143	340 aa	Known RBP	3.57	□□□□□ -1.84
CAF16	YFL028C	MAL12	P53341	584 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	SWT21	P53873	357 aa	Predicted RBP	3.57	□□□□□ -1.84
CAF16	YFL028C	CTF19	Q02732	369 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	YDR102C	Q03864	110 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	BNA7	Q04066	261 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	MRX8	Q05473	314 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	YDL180W	Q12301	547 aa		3.57	□□□□□ -1.84
CAF16	YFL028C	NUP49	Q02199	472 aa		3.56	□□□□□ -1.84
CAF16	YFL028C	YPR098C	Q06089	161 aa		3.56	□□□□□ -1.84
CAF16	YFL028C	PIN3	Q06449	215 aa		3.56	□□□□□ -1.84
CAF16	YFL028C	RRS1	Q08746	203 aa	Known RBP	3.56	□□□□□ -1.84
CAF16	YFL028C	FUS3	P16892	353 aa	Known RBP	3.55	□□□□□ -1.84
CAF16	YFL028C	VMA6	P32366	345 aa	Known RBP	3.55	□□□□□ -1.84
CAF16	YFL028C	YBL081W	P38180	368 aa	Known RBP	3.55	□□□□□ -1.84
CAF16	YFL028C	YBR096W	P38256	230 aa		3.55	□□□□□ -1.84
CAF16	YFL028C	TMA20	P89886	181 aa	Predicted RBP	3.55	□□□□□ -1.84
CAF16	YFL028C	YMR315W	Q04869	349 aa	Known RBP	3.55	□□□□□ -1.84
CAF16	YFL028C	NNT1	Q05874	261 aa		3.55	□□□□□ -1.84
CAF16	YFL028C	RAF1	Q06891	181 aa		3.55	□□□□□ -1.84
CAF16	YFL028C	YCT1	Q12235	531 aa		3.55	□□□□□ -1.84
CAF16	YFL028C	SNU23	Q12368	194 aa	Predicted RBP	3.55	□□□□□ -1.84
CAF16	YFL028C	SOD1	P00445	154 aa	Known RBP	3.54	□□□□□ -1.84
CAF16	YFL028C	CPT1	P17898	393 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	STE18	P18852	110 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	RPL24B	P24000	155 aa	Known RBP	3.54	□□□□□ -1.84
CAF16	YFL028C	ERG2	P32352	222 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	SRP102	P36057	244 aa	Predicted RBP	3.54	□□□□□ -1.84
CAF16	YFL028C	SYS1	P41544	203 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	PFS2	P42841	465 aa	Known RBP	3.54	□□□□□ -1.84
CAF16	YFL028C	YFL051C	P43552	160 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	UFD1	P53044	361 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	SLX9	P53251	210 aa	Predicted RBP	3.54	□□□□□ -1.84
CAF16	YFL028C	SAY1	P53324	424 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	SMD1	Q02260	146 aa	Predicted RBP	3.54	□□□□□ -1.84
CAF16	YFL028C	PET191	Q02772	108 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	NEJ1	Q06148	342 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	ATG17	Q06410	417 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	SYC1	Q08553	188 aa	Predicted RBP	3.54	□□□□□ -1.84
CAF16	YFL028C	RFM1	Q12192	310 aa		3.54	□□□□□ -1.84
CAF16	YFL028C	MSW1	P04803	379 aa		3.53	□□□□□ -1.84
CAF16	YFL028C	CDC36	P06100	191 aa	Predicted RBP	3.53	□□□□□ -1.84
CAF16	YFL028C	NHP6B	P11633	99 aa	Known RBP	3.53	□□□□□ -1.84
CAF16	YFL028C	DBF2	P22204	572 aa		3.53	□□□□□ -1.84
CAF16	YFL028C	MIC12	P38341	106 aa		3.53	□□□□□ -1.84
CAF16	YFL028C	YHL037C	P38733	133 aa		3.53	□□□□□ -1.84
CAF16	YFL028C	RIO2	P40160	425 aa	Known RBP	3.53	□□□□□ -1.84
CAF16	YFL028C	PAM16	P42949	149 aa		3.53	□□□□□ -1.84
CAF16	YFL028C	MAK3	Q03503	176 aa		3.53	□□□□□ -1.84
CAF16	YFL028C	RCE1	Q03530	315 aa		3.53	□□□□□ -1.84
CAF16	YFL028C	AIM36	Q03798	255 aa		3.53	□□□□□ -1.84
CAF16	YFL028C	GTO3	Q04806	366 aa		3.53	□□□□□ -1.84
CAF16	YFL028C	YMR252C	Q04814	134 aa		3.53	□□□□□ -1.84
CAF16	YFL028C	YGL041W-A	P0C5N3	154 aa		3.52	□□□□□ -1.85
CAF16	YFL028C	PRE7	P23724	241 aa	Known RBP	3.52	□□□□□ -1.85
CAF16	YFL028C	ARO7	P32178	256 aa		3.52	□□□□□ -1.85
CAF16	YFL028C	YGP1	P38616	354 aa	Known RBP	3.52	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 24.7 ms