RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C EFM1P38732 585 aa3.41□□□□□ -1.86
CDC9YDL164C YNL200CP40165 246 aaKnown RBP3.41□□□□□ -1.86
CDC9YDL164C CLD1P53264 445 aa3.41□□□□□ -1.86
CDC9YDL164C RUB1Q03919 77 aa3.41□□□□□ -1.86
CDC9YDL164C MDM32Q12171 622 aa3.41□□□□□ -1.86
CDC9YDL164C YDL180WQ12301 547 aa3.41□□□□□ -1.86
CDC9YDL164C RPA190P10964 1664 aaKnown RBP3.41□□□□□ -1.86
CDC9YDL164C CKS1P20486 150 aaKnown RBP3.41□□□□□ -1.86
CDC9YDL164C RSA4P25382 515 aaKnown RBP3.41□□□□□ -1.86
CDC9YDL164C SUA7P29055 345 aaPredicted RBP3.41□□□□□ -1.86
CDC9YDL164C RPF1P38805 295 aaKnown RBP3.41□□□□□ -1.86
CDC9YDL164C YNL208WP40159 199 aaKnown RBP3.41□□□□□ -1.86
CDC9YDL164C BIR1P47134 954 aa3.41□□□□□ -1.86
CDC9YDL164C NTE1Q04958 1679 aa3.4□□□□□ -1.86
CDC9YDL164C PEX34P25584 144 aa3.4□□□□□ -1.86
CDC9YDL164C YCR101CP25607 182 aa3.4□□□□□ -1.86
CDC9YDL164C OCH1P31755 480 aa3.4□□□□□ -1.86
CDC9YDL164C GGC1P38988 300 aa3.4□□□□□ -1.86
CDC9YDL164C FIP1P45976 327 aa3.4□□□□□ -1.86
CDC9YDL164C GPI14P47088 403 aaKnown RBP3.4□□□□□ -1.86
CDC9YDL164C UFD1P53044 361 aa3.4□□□□□ -1.86
CDC9YDL164C LSM3P57743 89 aaKnown RBP3.4□□□□□ -1.86
CDC9YDL164C SUE1Q06524 206 aa3.4□□□□□ -1.86
CDC9YDL164C NDD1Q08887 554 aa3.4□□□□□ -1.86
CDC9YDL164C YPL162CQ12042 273 aa3.4□□□□□ -1.86
CDC9YDL164C ADE6P38972 1358 aaKnown RBP3.4□□□□□ -1.87
CDC9YDL164C RPL30P14120 105 aaKnown RBP3.4□□□□□ -1.87
CDC9YDL164C TKL2P33315 681 aa3.4□□□□□ -1.87
CDC9YDL164C YER189WP40104 122 aa3.4□□□□□ -1.87
CDC9YDL164C RFC2P40348 353 aa3.4□□□□□ -1.87
CDC9YDL164C SYS1P41544 203 aa3.4□□□□□ -1.87
CDC9YDL164C SKI6P46948 246 aaPredicted RBP3.4□□□□□ -1.87
CDC9YDL164C OSH6Q02201 448 aa3.4□□□□□ -1.87
CDC9YDL164C RSM10Q03201 203 aa3.4□□□□□ -1.87
CDC9YDL164C YMD8Q03697 442 aa3.4□□□□□ -1.87
CDC9YDL164C FRQ1Q06389 190 aa3.4□□□□□ -1.87
CDC9YDL164C SEC7P11075 2009 aaKnown RBP3.39□□□□□ -1.87
CDC9YDL164C CDC8P00572 216 aa3.39□□□□□ -1.87
CDC9YDL164C ERG2P32352 222 aa3.39□□□□□ -1.87
CDC9YDL164C SWD3P38123 315 aa3.39□□□□□ -1.87
CDC9YDL164C MIC19P43594 170 aa3.39□□□□□ -1.87
CDC9YDL164C TTI2P47168 421 aa3.39□□□□□ -1.87
CDC9YDL164C YGR219WP53307 113 aa3.39□□□□□ -1.87
CDC9YDL164C MAK3Q03503 176 aa3.39□□□□□ -1.87
CDC9YDL164C API2Q04413 109 aa3.39□□□□□ -1.87
CDC9YDL164C MCP1Q12106 302 aa3.39□□□□□ -1.87
CDC9YDL164C DFM1Q12743 341 aaKnown RBP3.39□□□□□ -1.87
CDC9YDL164C MAG1P22134 296 aaKnown RBP3.39□□□□□ -1.87
CDC9YDL164C CTR2P38865 189 aa3.39□□□□□ -1.87
CDC9YDL164C REE1P40893 198 aa3.39□□□□□ -1.87
CDC9YDL164C PHB1P40961 287 aa3.39□□□□□ -1.87
CDC9YDL164C YGL088WP53151 121 aa3.39□□□□□ -1.87
CDC9YDL164C SWT21P53873 357 aaPredicted RBP3.39□□□□□ -1.87
CDC9YDL164C NAT3Q06504 195 aa3.39□□□□□ -1.87
CDC9YDL164C RRG7Q08774 242 aaPredicted RBP3.39□□□□□ -1.87
CDC9YDL164C JID1Q12350 301 aa3.39□□□□□ -1.87
CDC9YDL164C TAD3Q9URQ3 322 aa3.39□□□□□ -1.87
CDC9YDL164C KIN28P06242 306 aa3.38□□□□□ -1.87
CDC9YDL164C RPS19AP07280 144 aaKnown RBP3.38□□□□□ -1.87
CDC9YDL164C RPS19BP07281 144 aaPredicted RBP3.38□□□□□ -1.87
CDC9YDL164C ATP15P21306 62 aa3.38□□□□□ -1.87
CDC9YDL164C SPT14P32363 452 aa3.38□□□□□ -1.87
CDC9YDL164C HYM1P32464 399 aa3.38□□□□□ -1.87
CDC9YDL164C AVT6P40074 448 aa3.38□□□□□ -1.87
CDC9YDL164C MNN5P46982 586 aa3.38□□□□□ -1.87
CDC9YDL164C YGL262WP53054 175 aa3.38□□□□□ -1.87
CDC9YDL164C APJ1P53940 528 aa3.38□□□□□ -1.87
CDC9YDL164C IMP4P53941 290 aaKnown RBP3.38□□□□□ -1.87
CDC9YDL164C SLM2P53955 656 aa3.38□□□□□ -1.87
CDC9YDL164C RPL21AQ02753 160 aaKnown RBP3.38□□□□□ -1.87
CDC9YDL164C LDB18Q07887 179 aa3.38□□□□□ -1.87
CDC9YDL164C YOR304C-AO14468 76 aa3.37□□□□□ -1.87
CDC9YDL164C PHO13P19881 312 aa3.37□□□□□ -1.87
CDC9YDL164C STP22P25604 385 aa3.37□□□□□ -1.87
CDC9YDL164C YRA2P36036 203 aaKnown RBP RIP-Chip data3.37□□□□□ -1.87not detected
CDC9YDL164C PHO89P38361 574 aa3.37□□□□□ -1.87
CDC9YDL164C KRE9P39005 276 aa3.37□□□□□ -1.87
CDC9YDL164C MIG3P39943 394 aa3.37□□□□□ -1.87
CDC9YDL164C GVP36P40531 326 aaKnown RBP3.37□□□□□ -1.87
CDC9YDL164C YFR054CP43622 192 aa3.37□□□□□ -1.87
CDC9YDL164C DGK1Q12382 290 aa3.37□□□□□ -1.87
CDC9YDL164C YLR462WO13556 202 aa3.37□□□□□ -1.87
CDC9YDL164C PRE7P23724 241 aaKnown RBP3.37□□□□□ -1.87
CDC9YDL164C YKR070WP36151 352 aaKnown RBP3.37□□□□□ -1.87
CDC9YDL164C YEL075CP39972 122 aa3.37□□□□□ -1.87
CDC9YDL164C ARL3Q02804 198 aa3.37□□□□□ -1.87
CDC9YDL164C YDR115WQ04598 105 aa3.37□□□□□ -1.87
CDC9YDL164C HMS1Q12398 434 aa3.37□□□□□ -1.87
CDC9YDL164C REP2P03872 296 aa3.36□□□□□ -1.87
CDC9YDL164C RPB3P16370 318 aaKnown RBP3.36□□□□□ -1.87
CDC9YDL164C YHI9P38765 294 aa3.36□□□□□ -1.87
CDC9YDL164C FYV4P38783 130 aaPredicted RBP3.36□□□□□ -1.87
CDC9YDL164C YPL073CP40323 161 aa3.36□□□□□ -1.87
CDC9YDL164C YFL067WP43537 175 aa3.36□□□□□ -1.87
CDC9YDL164C YFL019CP43576 117 aa3.36□□□□□ -1.87
CDC9YDL164C CCC1P47818 322 aa3.36□□□□□ -1.87
CDC9YDL164C OCA6Q12454 224 aa3.36□□□□□ -1.87
CDC9YDL164C TSC3Q3E790 80 aa3.36□□□□□ -1.87
CDC9YDL164C NUP188P52593 1655 aaKnown RBP3.36□□□□□ -1.87
CDC9YDL164C SGA1P08019 549 aa3.36□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 105.3 ms