RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C SCO2P38072 301 aa3.47□□□□□ -1.85
CDC9YDL164C SMP1P38128 452 aa3.47□□□□□ -1.85
CDC9YDL164C RFS1P38234 210 aaKnown RBP3.47□□□□□ -1.85
CDC9YDL164C PKR1Q03880 122 aaKnown RBP3.47□□□□□ -1.85
CDC9YDL164C ECM19Q06011 112 aa3.47□□□□□ -1.85
CDC9YDL164C YLR179CQ06252 201 aaKnown RBP3.47□□□□□ -1.85
CDC9YDL164C YDL085C-AQ3E7B7 68 aaKnown RBP3.47□□□□□ -1.85
CDC9YDL164C Q0144Q9ZZW2 109 aa3.47□□□□□ -1.85
CDC9YDL164C RPO21P04050 1733 aaKnown RBP3.47□□□□□ -1.85
CDC9YDL164C HHF1P02309 103 aaKnown RBP3.46□□□□□ -1.85
CDC9YDL164C CMD1P06787 147 aaKnown RBP3.46□□□□□ -1.85
CDC9YDL164C RPB9P27999 122 aa3.46□□□□□ -1.85
CDC9YDL164C IMP1P28627 190 aa3.46□□□□□ -1.85
CDC9YDL164C YHL044WP38727 235 aa3.46□□□□□ -1.85
CDC9YDL164C RBL2P48606 106 aaKnown RBP3.46□□□□□ -1.85
CDC9YDL164C ATO3Q12359 275 aa3.46□□□□□ -1.85
CDC9YDL164C YCL021W-AQ96VH3 125 aa3.46□□□□□ -1.85
CDC9YDL164C NUP192P47054 1683 aa3.46□□□□□ -1.86
CDC9YDL164C DNF3Q12674 1656 aa3.46□□□□□ -1.86
CDC9YDL164C USO1P25386 1790 aa3.46□□□□□ -1.86
CDC9YDL164C BUB2P26448 306 aaPredicted RBP3.46□□□□□ -1.86
CDC9YDL164C SEC17P32602 292 aa3.46□□□□□ -1.86
CDC9YDL164C YIL012WP40551 113 aa3.46□□□□□ -1.86
CDC9YDL164C ARO8P53090 500 aaKnown RBP3.46□□□□□ -1.86
CDC9YDL164C DGA1Q08650 418 aa3.46□□□□□ -1.86
CDC9YDL164C NIP7Q08962 181 aaKnown RBP3.46□□□□□ -1.86
CDC9YDL164C YBL008W-AQ3E821 79 aa3.46□□□□□ -1.86
CDC9YDL164C NAG1Q8TGN9 163 aa3.46□□□□□ -1.86
CDC9YDL164C LDS1P31379 325 aa3.45□□□□□ -1.86
CDC9YDL164C LHP1P33399 275 aaKnown RBP3.45□□□□□ -1.86
CDC9YDL164C MSA2P36157 363 aa3.45□□□□□ -1.86
CDC9YDL164C MAM33P40513 266 aa3.45□□□□□ -1.86
CDC9YDL164C YGL101WP53144 215 aa3.45□□□□□ -1.86
CDC9YDL164C MRX11Q03079 207 aa3.45□□□□□ -1.86
CDC9YDL164C PST2Q12335 198 aaKnown RBP3.45□□□□□ -1.86
CDC9YDL164C BUD3P25558 1636 aa3.45□□□□□ -1.86
CDC9YDL164C ADH1P00330 348 aaKnown RBP3.45□□□□□ -1.86
CDC9YDL164C SIR2P06700 562 aa3.45□□□□□ -1.86
CDC9YDL164C PET9P18239 318 aaKnown RBP3.45□□□□□ -1.86
CDC9YDL164C YCR043CP25361 127 aa3.45□□□□□ -1.86
CDC9YDL164C YJR015WP47090 510 aa3.45□□□□□ -1.86
CDC9YDL164C PGA1P53896 198 aa3.45□□□□□ -1.86
CDC9YDL164C DID2P69771 204 aa3.45□□□□□ -1.86
CDC9YDL164C FMN1Q03778 218 aa3.45□□□□□ -1.86
CDC9YDL164C CHC1P22137 1653 aaKnown RBP3.44□□□□□ -1.86
CDC9YDL164C MBF1O14467 151 aaKnown RBP3.44□□□□□ -1.86
CDC9YDL164C IPP1P00817 287 aaKnown RBP3.44□□□□□ -1.86
CDC9YDL164C STB1P42845 420 aa3.44□□□□□ -1.86
CDC9YDL164C SDT1P53078 280 aa3.44□□□□□ -1.86
CDC9YDL164C CAB4P53332 305 aa3.44□□□□□ -1.86
CDC9YDL164C HPT1Q04178 221 aaKnown RBP3.44□□□□□ -1.86
CDC9YDL164C YDR124WQ04608 324 aa3.44□□□□□ -1.86
CDC9YDL164C DAS2Q12084 232 aa3.44□□□□□ -1.86
CDC9YDL164C IZH2Q12442 317 aa3.44□□□□□ -1.86
CDC9YDL164C PDR18P53756 1333 aa3.44□□□□□ -1.86
CDC9YDL164C YBR285WP38354 144 aa3.44□□□□□ -1.86
CDC9YDL164C HPM1P40481 377 aa3.44□□□□□ -1.86
CDC9YDL164C ALB1P47019 175 aaPredicted RBP3.44□□□□□ -1.86
CDC9YDL164C ILM1P47155 203 aa3.44□□□□□ -1.86
CDC9YDL164C YPL257WQ08974 193 aa3.44□□□□□ -1.86
CDC9YDL164C MPD1Q12404 318 aaKnown RBP3.44□□□□□ -1.86
CDC9YDL164C NHP6AP11632 93 aaKnown RBP3.43□□□□□ -1.86
CDC9YDL164C SCL1P21243 252 aaKnown RBP3.43□□□□□ -1.86
CDC9YDL164C RPS1BP23248 255 aaKnown RBP3.43□□□□□ -1.86
CDC9YDL164C SPO13P23624 291 aa3.43□□□□□ -1.86
CDC9YDL164C ZRT3P34240 503 aa3.43□□□□□ -1.86
CDC9YDL164C PRY2P36110 329 aa3.43□□□□□ -1.86
CDC9YDL164C RMD6P39975 231 aa3.43□□□□□ -1.86
CDC9YDL164C APQ12P40532 138 aa3.43□□□□□ -1.86
CDC9YDL164C UBC7Q02159 165 aa3.43□□□□□ -1.86
CDC9YDL164C GOT1Q03554 138 aa3.43□□□□□ -1.86
CDC9YDL164C INP1Q03694 420 aa3.43□□□□□ -1.86
CDC9YDL164C THI74Q04083 370 aa3.43□□□□□ -1.86
CDC9YDL164C GRH1Q04410 372 aaKnown RBP3.43□□□□□ -1.86
CDC9YDL164C YPS3Q12303 508 aa3.43□□□□□ -1.86
CDC9YDL164C HTZ1Q12692 134 aaKnown RBP3.43□□□□□ -1.86
CDC9YDL164C TDA8Q6B2U8 126 aa3.43□□□□□ -1.86
CDC9YDL164C DDP1Q99321 188 aaKnown RBP3.43□□□□□ -1.86
CDC9YDL164C YOL085CQ99345 113 aa3.43□□□□□ -1.86
CDC9YDL164C VMR1P38735 1592 aa3.43□□□□□ -1.86
CDC9YDL164C HSP30P25619 332 aa3.42□□□□□ -1.86
CDC9YDL164C HMF1P40037 129 aaKnown RBP3.42□□□□□ -1.86
CDC9YDL164C YJL028WP47062 111 aa3.42□□□□□ -1.86
CDC9YDL164C GAS3Q03655 524 aa3.42□□□□□ -1.86
CDC9YDL164C LPP1Q04396 274 aa3.42□□□□□ -1.86
CDC9YDL164C FMP42Q04991 504 aa3.42□□□□□ -1.86
CDC9YDL164C YPL247CQ12523 523 aa3.42□□□□□ -1.86
CDC9YDL164C RRP5Q05022 1729 aaKnown RBP3.42□□□□□ -1.86
CDC9YDL164C RPL25P04456 142 aaKnown RBP3.42□□□□□ -1.86
CDC9YDL164C ADK1P07170 222 aaKnown RBP3.42□□□□□ -1.86
CDC9YDL164C SNF4P12904 322 aa3.42□□□□□ -1.86
CDC9YDL164C TOM40P23644 387 aaKnown RBP3.42□□□□□ -1.86
CDC9YDL164C ATG22P25568 528 aa3.42□□□□□ -1.86
CDC9YDL164C YBR063CP38083 404 aa3.42□□□□□ -1.86
CDC9YDL164C TIM17P39515 158 aa3.42□□□□□ -1.86
CDC9YDL164C YEA4P40004 342 aa3.42□□□□□ -1.86
CDC9YDL164C MDM34P53083 459 aa3.42□□□□□ -1.86
CDC9YDL164C RPL21BQ12672 160 aaKnown RBP3.42□□□□□ -1.86
CDC9YDL164C Q0255P03881 472 aa3.41□□□□□ -1.86
CDC9YDL164C SRL3P36167 246 aa3.41□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 79 ms