RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ANO9A1A5B4 782 aa32.77■■■□□ 2.84
CTCF-203ENST00000566078 ENPP3O14638 875 aa32.77■■■□□ 2.84
CTCF-203ENST00000566078 CYP26A1O43174 497 aa32.77■■■□□ 2.84
CTCF-203ENST00000566078 UBR7Q8N806 425 aa32.77■■■□□ 2.84
CTCF-203ENST00000566078 PPP2R2CQ9Y2T4 447 aa32.77■■■□□ 2.84
CTCF-203ENST00000566078 PCDHB4Q9Y5E5 795 aa32.77■■■□□ 2.84
CTCF-203ENST00000566078 ADGRG1Q9Y653 693 aa32.77■■■□□ 2.84
CTCF-203ENST00000566078 FNDC1Q4ZHG4 1894 aaPredicted RBP32.76■■■□□ 2.83
CTCF-203ENST00000566078 OFD1O75665 1012 aa32.76■■■□□ 2.83
CTCF-203ENST00000566078 P4HA1P13674 534 aa32.76■■■□□ 2.83
CTCF-203ENST00000566078 RFC2P35250 354 aa32.76■■■□□ 2.83
CTCF-203ENST00000566078 CLCN1P35523 988 aa32.76■■■□□ 2.83
CTCF-203ENST00000566078 NAB2Q15742 525 aa32.76■■■□□ 2.83
CTCF-203ENST00000566078 ASTE1Q2TB18 679 aaPredicted RBP32.76■■■□□ 2.83
CTCF-203ENST00000566078 CCAR2Q8N163 923 aaKnown RBP32.76■■■□□ 2.83
CTCF-203ENST00000566078 FAXDC2Q96IV6 333 aa32.76■■■□□ 2.83
CTCF-203ENST00000566078 ZNF560Q96MR9 790 aa32.76■■■□□ 2.83
CTCF-203ENST00000566078 BCO2Q9BYV7 579 aa32.76■■■□□ 2.83
CTCF-203ENST00000566078 MKI67P46013 3256 aaKnown RBP32.75■■■□□ 2.83
CTCF-203ENST00000566078 TRIM43BA6NCK2 446 aa32.75■■■□□ 2.83
CTCF-203ENST00000566078 USP27XA6NNY8 438 aa32.75■■■□□ 2.83
CTCF-203ENST00000566078 EIF3CLB5ME19 914 aaKnown RBP32.75■■■□□ 2.83
CTCF-203ENST00000566078 PIRO00625 290 aa32.75■■■□□ 2.83
CTCF-203ENST00000566078 KIAA0355O15063 1070 aa32.75■■■□□ 2.83
CTCF-203ENST00000566078 CCDC175P0C221 793 aa32.75■■■□□ 2.83
CTCF-203ENST00000566078 CD58P19256 250 aa32.75■■■□□ 2.83
CTCF-203ENST00000566078 LRPAP1P30533 357 aa32.75■■■□□ 2.83
CTCF-203ENST00000566078 TNNC1P63316 161 aa32.75■■■□□ 2.83
CTCF-203ENST00000566078 TRIM43Q96BQ3 446 aaPredicted RBP32.75■■■□□ 2.83
CTCF-203ENST00000566078 EIF3CQ99613 913 aaKnown RBP32.75■■■□□ 2.83
CTCF-203ENST00000566078 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP32.75■■■□□ 2.83
CTCF-203ENST00000566078 TMEM161AQ9NX61 479 aa32.75■■■□□ 2.83
CTCF-203ENST00000566078 TRMT1Q9NXH9 659 aaKnown RBP32.75■■■□□ 2.83
CTCF-203ENST00000566078 TIMP1P01033 207 aa32.74■■■□□ 2.83
CTCF-203ENST00000566078 POMCP01189 267 aa32.74■■■□□ 2.83
CTCF-203ENST00000566078 RAP1GAPP47736 663 aa32.74■■■□□ 2.83
CTCF-203ENST00000566078 GRIK3Q13003 919 aa32.74■■■□□ 2.83
CTCF-203ENST00000566078 TMEM270Q6UE05 265 aa32.74■■■□□ 2.83
CTCF-203ENST00000566078 SMYD3Q9H7B4 428 aa32.74■■■□□ 2.83
CTCF-203ENST00000566078 CISHQ9NSE2 258 aa32.74■■■□□ 2.83
CTCF-203ENST00000566078 GTF3C5Q9Y5Q8 519 aaPredicted RBP32.74■■■□□ 2.83
CTCF-203ENST00000566078 WEE2P0C1S8 567 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 YWHAEP62258 255 aaKnown RBP32.73■■■□□ 2.83
CTCF-203ENST00000566078 GLB1LQ6UWU2 654 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 SLC47A2Q86VL8 602 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 INPPL1O15357 1258 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 ZSCAN12O43309 604 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 IPO7O95373 1038 aaKnown RBP32.73■■■□□ 2.83
CTCF-203ENST00000566078 PNPLA4P41247 253 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 GFPT1Q06210 699 aaPredicted RBP32.73■■■□□ 2.83
CTCF-203ENST00000566078 CLLU1OSQ5K130 101 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 VPS36Q86VN1 386 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 RBBP8NLQ8NC74 664 aaPredicted RBP32.73■■■□□ 2.83
CTCF-203ENST00000566078 ELAC1Q9H777 363 aaKnown RBP32.73■■■□□ 2.83
CTCF-203ENST00000566078 ACP6Q9NPH0 428 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 KCND1Q9NSA2 647 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 CNTN6Q9UQ52 1028 aa32.73■■■□□ 2.83
CTCF-203ENST00000566078 FGFR1P11362 822 aa32.72■■■□□ 2.83
CTCF-203ENST00000566078 RAG1P15918 1043 aa32.72■■■□□ 2.83
CTCF-203ENST00000566078 ITGB8P26012 769 aa32.72■■■□□ 2.83
CTCF-203ENST00000566078 ANXA13P27216 316 aa32.72■■■□□ 2.83
CTCF-203ENST00000566078 CNKSR3Q6P9H4 555 aa32.72■■■□□ 2.83
CTCF-203ENST00000566078 EPS8L1Q8TE68 723 aa32.72■■■□□ 2.83
CTCF-203ENST00000566078 SLC20A1Q8WUM9 679 aa32.72■■■□□ 2.83
CTCF-203ENST00000566078 SDCBP2Q9H190 292 aa32.72■■■□□ 2.83
CTCF-203ENST00000566078 REXO2Q9Y3B8 237 aaKnown RBP32.72■■■□□ 2.83
CTCF-203ENST00000566078 CCP110O43303 1012 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 LCA5LO95447 670 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 TAF6P49848 677 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 PDE6CP51160 858 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 SPA17Q15506 151 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 PPP1R13BQ96KQ4 1090 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 MMS19Q96T76 1030 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 CACNG4Q9UBN1 327 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 ADAMTS1Q9UHI8 967 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 PCDHB7Q9Y5E2 793 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 SNX9Q9Y5X1 595 aa32.71■■■□□ 2.83
CTCF-203ENST00000566078 LOC101059915A0A1B0GWI6 518 aaPredicted RBP32.7■■■□□ 2.83
CTCF-203ENST00000566078 ZNF263O14978 683 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 CYP11B1P15538 503 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 CDH8P55286 799 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 CYP27A1Q02318 531 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 SLC18A3Q16572 532 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 SV2CQ496J9 727 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 NOP9Q86U38 636 aaKnown RBP32.7■■■□□ 2.83
CTCF-203ENST00000566078 URGCPQ8TCY9 931 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 AGPAT1Q99943 283 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 SYT11Q9BT88 431 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 CYP3A43Q9HB55 503 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 NOCTQ9UK39 431 aaKnown RBP32.7■■■□□ 2.83
CTCF-203ENST00000566078 LRFN2Q9ULH4 789 aa32.7■■■□□ 2.83
CTCF-203ENST00000566078 TSC2P49815 1807 aa32.7■■■□□ 2.82
CTCF-203ENST00000566078 A0A087X0T9 212 aa32.69■■■□□ 2.82
CTCF-203ENST00000566078 CASTOR2A6NHX0 329 aa32.69■■■□□ 2.82
CTCF-203ENST00000566078 FAM228BP0C875 321 aa32.69■■■□□ 2.82
CTCF-203ENST00000566078 KRT83P78385 493 aa32.69■■■□□ 2.82
CTCF-203ENST00000566078 PODXLO00592 558 aa32.69■■■□□ 2.82
CTCF-203ENST00000566078 ZNF500O60304 480 aaPredicted RBP32.69■■■□□ 2.82
CTCF-203ENST00000566078 CALCAP01258 141 aa32.69■■■□□ 2.82
CTCF-203ENST00000566078 CLCNKBP51801 687 aa32.69■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms