RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB5	YLR260W	OCA5	P38738	679 aa		4.65	□□□□□ -1.66
LCB5	YLR260W	MDG1	P53885	366 aa		4.65	□□□□□ -1.66
LCB5	YLR260W	GIN4	Q12263	1142 aa		4.65	□□□□□ -1.66
LCB5	YLR260W	PRP45	P28004	379 aa	Predicted RBP	4.65	□□□□□ -1.67
LCB5	YLR260W	ESL2	P36168	1195 aa		4.65	□□□□□ -1.67
LCB5	YLR260W	PEX29	Q03370	554 aa		4.65	□□□□□ -1.67
LCB5	YLR260W	YDL129W	Q07555	291 aa		4.65	□□□□□ -1.67
LCB5	YLR260W	ADE6	P38972	1358 aa	Known RBP	4.64	□□□□□ -1.67
LCB5	YLR260W	SSF1	P38789	453 aa	Predicted RBP	4.64	□□□□□ -1.67
LCB5	YLR260W	TFG1	P41895	735 aa	Predicted RBP	4.64	□□□□□ -1.67
LCB5	YLR260W	PEX21	P50091	288 aa		4.64	□□□□□ -1.67
LCB5	YLR260W	NIS1	P53939	407 aa		4.64	□□□□□ -1.67
LCB5	YLR260W	SEN54	Q02825	467 aa	Predicted RBP	4.64	□□□□□ -1.67
LCB5	YLR260W	SSA4	P22202	642 aa	Known RBP	4.63	□□□□□ -1.67
LCB5	YLR260W	PKC1	P24583	1151 aa		4.63	□□□□□ -1.67
LCB5	YLR260W	HEM3	P28789	327 aa		4.63	□□□□□ -1.67
LCB5	YLR260W	CSN12	P47130	423 aa		4.63	□□□□□ -1.67
LCB5	YLR260W	TPO2	P53283	614 aa		4.63	□□□□□ -1.67
LCB5	YLR260W	TUM1	Q08686	304 aa	Known RBP	4.63	□□□□□ -1.67
LCB5	YLR260W	PSK1	P31374	1356 aa		4.63	□□□□□ -1.67
LCB5	YLR260W	KTR1	P27810	393 aa	Known RBP	4.63	□□□□□ -1.67
LCB5	YLR260W	ISU2	Q12056	156 aa		4.63	□□□□□ -1.67
LCB5	YLR260W	SSA2	P10592	639 aa	Known RBP	4.62	□□□□□ -1.67
LCB5	YLR260W	PRP5	P21372	849 aa	Predicted RBP	4.62	□□□□□ -1.67
LCB5	YLR260W	OSW7	P43611	510 aa		4.62	□□□□□ -1.67
LCB5	YLR260W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
LCB5	YLR260W	MSB3	P48566	633 aa	Predicted RBP	4.62	□□□□□ -1.67
LCB5	YLR260W	NMA111	P53920	997 aa		4.62	□□□□□ -1.67
LCB5	YLR260W	YML133C	Q03099	1374 aa		4.62	□□□□□ -1.67
LCB5	YLR260W	YLL067C	Q07888	1374 aa		4.62	□□□□□ -1.67
LCB5	YLR260W	YLL066C	Q99208	1374 aa		4.62	□□□□□ -1.67
LCB5	YLR260W	SPE2	P21182	396 aa		4.61	□□□□□ -1.67
LCB5	YLR260W	BIM1	P40013	344 aa		4.61	□□□□□ -1.67
LCB5	YLR260W	FPK1	P53739	893 aa		4.61	□□□□□ -1.67
LCB5	YLR260W	YRR1	Q12172	810 aa		4.61	□□□□□ -1.67
LCB5	YLR260W	APC1	P53886	1748 aa		4.61	□□□□□ -1.67
LCB5	YLR260W	KIP3	P53086	805 aa	Known RBP	4.61	□□□□□ -1.67
LCB5	YLR260W	YDR344C	Q05510	147 aa		4.61	□□□□□ -1.67
LCB5	YLR260W	YLR419W	Q06698	1435 aa	Known RBP	4.61	□□□□□ -1.67
LCB5	YLR260W	SIS2	P36024	562 aa		4.6	□□□□□ -1.67
LCB5	YLR260W	SAP30	P38429	201 aa		4.6	□□□□□ -1.67
LCB5	YLR260W	HST2	P53686	357 aa		4.6	□□□□□ -1.67
LCB5	YLR260W	RPL34A	P87262	121 aa	Predicted RBP	4.6	□□□□□ -1.67
LCB5	YLR260W	TYW1	Q08960	810 aa	Known RBP	4.6	□□□□□ -1.67
LCB5	YLR260W	ATG32	P40458	529 aa		4.6	□□□□□ -1.67
LCB5	YLR260W	DOT5	P40553	215 aa		4.6	□□□□□ -1.67
LCB5	YLR260W	YAF9	P53930	226 aa		4.6	□□□□□ -1.67
LCB5	YLR260W	SIT4	P20604	311 aa		4.59	□□□□□ -1.67
LCB5	YLR260W	CDC3	P32457	520 aa	Known RBP	4.59	□□□□□ -1.67
LCB5	YLR260W	YJL007C	P47080	104 aa		4.59	□□□□□ -1.67
LCB5	YLR260W	KRI1	P42846	591 aa	Known RBP	4.58	□□□□□ -1.68
LCB5	YLR260W	YFR016C	P43597	1233 aa	Known RBP	4.58	□□□□□ -1.68
LCB5	YLR260W	ARH1	P48360	493 aa		4.58	□□□□□ -1.68
LCB5	YLR260W	HAP5	Q02516	242 aa		4.58	□□□□□ -1.68
LCB5	YLR260W	RPN11	P43588	306 aa	Known RBP	4.58	□□□□□ -1.68
LCB5	YLR260W	FOX2	Q02207	900 aa	Known RBP	4.58	□□□□□ -1.68
LCB5	YLR260W	RPS24A	P0CX31	135 aa	Known RBP	4.57	□□□□□ -1.68
LCB5	YLR260W	RPS24B	P0CX32	135 aa	Known RBP	4.57	□□□□□ -1.68
LCB5	YLR260W	SCJ1	P25303	377 aa		4.57	□□□□□ -1.68
LCB5	YLR260W	PRP43	P53131	767 aa	Known RBP	4.57	□□□□□ -1.68
LCB5	YLR260W	FPR4	Q06205	392 aa	Predicted RBP	4.57	□□□□□ -1.68
LCB5	YLR260W	MMP1	Q12372	583 aa		4.57	□□□□□ -1.68
LCB5	YLR260W	RSF2	P46974	1380 aa		4.57	□□□□□ -1.68
LCB5	YLR260W	PDR1	P12383	1068 aa		4.57	□□□□□ -1.68
LCB5	YLR260W	NUD1	P32336	851 aa		4.57	□□□□□ -1.68
LCB5	YLR260W	NPR2	P39923	615 aa		4.57	□□□□□ -1.68
LCB5	YLR260W	NOB1	Q08444	459 aa	Known RBP	4.57	□□□□□ -1.68
LCB5	YLR260W	MLP1	Q02455	1875 aa	Known RBP	4.56	□□□□□ -1.68
LCB5	YLR260W	ESS1	P22696	170 aa		4.56	□□□□□ -1.68
LCB5	YLR260W	CSE4	P36012	229 aa		4.56	□□□□□ -1.68
LCB5	YLR260W	RGA1	P39083	1007 aa		4.56	□□□□□ -1.68
LCB5	YLR260W	CST6	P40535	587 aa		4.56	□□□□□ -1.68
LCB5	YLR260W	UBX5	Q06682	500 aa		4.56	□□□□□ -1.68
LCB5	YLR260W	SLM3	Q12093	417 aa		4.56	□□□□□ -1.68
LCB5	YLR260W	SNF2	P22082	1703 aa		4.56	□□□□□ -1.68
LCB5	YLR260W	RIM15	P43565	1770 aa		4.55	□□□□□ -1.68
LCB5	YLR260W	ERG12	P07277	443 aa		4.55	□□□□□ -1.68
LCB5	YLR260W	NMD2	P38798	1089 aa	Known RBP	4.55	□□□□□ -1.68
LCB5	YLR260W	CHZ1	P40019	153 aa	Predicted RBP	4.55	□□□□□ -1.68
LCB5	YLR260W	LYS4	P49367	693 aa	Predicted RBP	4.55	□□□□□ -1.68
LCB5	YLR260W	HAT1	Q12341	374 aa		4.55	□□□□□ -1.68
LCB5	YLR260W	MNN4	P36044	1178 aa		4.55	□□□□□ -1.68
LCB5	YLR260W	TCB1	Q12466	1186 aa		4.55	□□□□□ -1.68
LCB5	YLR260W	LEU2	P04173	364 aa	Predicted RBP	4.54	□□□□□ -1.68
LCB5	YLR260W	TIF1	P10081	395 aa	Known RBP	4.54	□□□□□ -1.68
LCB5	YLR260W	YJU3	P28321	313 aa		4.54	□□□□□ -1.68
LCB5	YLR260W	ALD2	P47771	506 aa		4.54	□□□□□ -1.68
LCB5	YLR260W	RTF1	P53064	558 aa		4.54	□□□□□ -1.68
LCB5	YLR260W	BNI4	P53858	892 aa		4.54	□□□□□ -1.68
LCB5	YLR260W	PKH3	Q03306	898 aa	Predicted RBP	4.54	□□□□□ -1.68
LCB5	YLR260W	KEX2	P13134	814 aa		4.53	□□□□□ -1.68
LCB5	YLR260W	RAM1	P22007	431 aa		4.53	□□□□□ -1.68
LCB5	YLR260W	TOM20	P35180	183 aa		4.53	□□□□□ -1.68
LCB5	YLR260W	STR2	P47164	639 aa		4.53	□□□□□ -1.68
LCB5	YLR260W	YNL115C	P53925	644 aa		4.53	□□□□□ -1.68
LCB5	YLR260W	RAD59	Q12223	238 aa		4.53	□□□□□ -1.68
LCB5	YLR260W	ROM2	P51862	1356 aa	Known RBP	4.53	□□□□□ -1.68
LCB5	YLR260W	YKR075C	P36155	307 aa		4.53	□□□□□ -1.68
LCB5	YLR260W	YBL086C	P38177	466 aa		4.53	□□□□□ -1.68
LCB5	YLR260W	XKS1	P42826	600 aa		4.53	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 70.5 ms