RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC40	YDR364C	KIN1	P13185	1064 aa		5.85	□□□□□ -1.47
CDC40	YDR364C	SPT5	P27692	1063 aa	Known RBP	5.85	□□□□□ -1.47
CDC40	YDR364C	GPM1	P00950	247 aa	Known RBP	5.84	□□□□□ -1.47
CDC40	YDR364C	YCK2	P23292	546 aa	Known RBP	5.84	□□□□□ -1.47
CDC40	YDR364C	SUM1	P46676	1062 aa		5.84	□□□□□ -1.47
CDC40	YDR364C	YNR014W	P53719	212 aa		5.84	□□□□□ -1.47
CDC40	YDR364C	LEO1	P38439	464 aa		5.83	□□□□□ -1.48
CDC40	YDR364C	UTP7	P40055	554 aa	Known RBP	5.83	□□□□□ -1.48
CDC40	YDR364C	MCM16	Q12262	181 aa		5.83	□□□□□ -1.48
CDC40	YDR364C	FPS1	P23900	669 aa		5.82	□□□□□ -1.48
CDC40	YDR364C	IRE1	P32361	1115 aa		5.82	□□□□□ -1.48
CDC40	YDR364C	ISF1	P32488	338 aa		5.82	□□□□□ -1.48
CDC40	YDR364C	HAL5	P38970	855 aa	Known RBP	5.82	□□□□□ -1.48
CDC40	YDR364C	ALA1	P40825	983 aa	Known RBP	5.81	□□□□□ -1.48
CDC40	YDR364C	JJJ2	P46997	583 aa		5.81	□□□□□ -1.48
CDC40	YDR364C	SLX8	P40072	274 aa		5.8	□□□□□ -1.48
CDC40	YDR364C	UTP13	Q05946	817 aa	Known RBP	5.8	□□□□□ -1.48
CDC40	YDR364C	SHM1	P37292	490 aa	Predicted RBP	5.8	□□□□□ -1.48
CDC40	YDR364C	BOI2	P39969	1040 aa		5.8	□□□□□ -1.48
CDC40	YDR364C	YDR215C	Q12240	137 aa		5.8	□□□□□ -1.48
CDC40	YDR364C	AMN1	P38285	549 aa	Predicted RBP	5.79	□□□□□ -1.48
CDC40	YDR364C	MET1	P36150	593 aa		5.78	□□□□□ -1.48
CDC40	YDR364C	MRPL16	P38064	232 aa		5.78	□□□□□ -1.48
CDC40	YDR364C	GUA1	P38625	525 aa	Known RBP	5.78	□□□□□ -1.48
CDC40	YDR364C	HDA3	Q06623	655 aa		5.78	□□□□□ -1.48
CDC40	YDR364C	YDJ1	P25491	409 aa	Known RBP	5.77	□□□□□ -1.49
CDC40	YDR364C	KNS1	P32350	737 aa	Predicted RBP	5.77	□□□□□ -1.49
CDC40	YDR364C	ATG3	P40344	310 aa		5.77	□□□□□ -1.49
CDC40	YDR364C	PSH1	Q12161	406 aa		5.77	□□□□□ -1.49
CDC40	YDR364C	PDC6	P26263	563 aa	Known RBP	5.76	□□□□□ -1.49
CDC40	YDR364C	YBL036C	P38197	257 aa		5.76	□□□□□ -1.49
CDC40	YDR364C	SLN1	P39928	1220 aa	Predicted RBP	5.76	□□□□□ -1.49
CDC40	YDR364C	PDC5	P16467	563 aa	Known RBP	5.75	□□□□□ -1.49
CDC40	YDR364C	SOH1	P38633	127 aa		5.75	□□□□□ -1.49
CDC40	YDR364C	SPR3	P41901	512 aa		5.75	□□□□□ -1.49
CDC40	YDR364C	LSB6	P42951	607 aa		5.75	□□□□□ -1.49
CDC40	YDR364C	RPS31	P05759	152 aa	Known RBP	5.74	□□□□□ -1.49
CDC40	YDR364C	HPC2	Q01448	625 aa		5.74	□□□□□ -1.49
CDC40	YDR364C	YPP1	P46951	817 aa		5.73	□□□□□ -1.49
CDC40	YDR364C	TY1A-DR2	Q03964	440 aa	Known RBP	5.73	□□□□□ -1.49
CDC40	YDR364C	YPQ2	Q06328	317 aa		5.73	□□□□□ -1.49
CDC40	YDR364C	MCA1	Q08601	432 aa		5.72	□□□□□ -1.49
CDC40	YDR364C	STB3	Q12427	513 aa		5.72	□□□□□ -1.49
CDC40	YDR364C	LEU1	P07264	779 aa	Known RBP	5.7	□□□□□ -1.5
CDC40	YDR364C	TAT1	P38085	619 aa		5.7	□□□□□ -1.5
CDC40	YDR364C	SUP45	P12385	437 aa	Known RBP	5.68	□□□□□ -1.5
CDC40	YDR364C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
CDC40	YDR364C	RPP1A	P05318	106 aa	Predicted RBP	5.67	□□□□□ -1.5
CDC40	YDR364C	SWI5	P08153	709 aa		5.67	□□□□□ -1.5
CDC40	YDR364C	MSC7	P38694	644 aa		5.67	□□□□□ -1.5
CDC40	YDR364C	BRL1	P38770	471 aa		5.67	□□□□□ -1.5
CDC40	YDR364C	YPL034W	Q03083	165 aa		5.67	□□□□□ -1.5
CDC40	YDR364C	RPN1	P38764	993 aa	Known RBP	5.66	□□□□□ -1.5
CDC40	YDR364C	PRY1	P47032	299 aa		5.66	□□□□□ -1.5
CDC40	YDR364C	TFB3	Q03290	321 aa		5.66	□□□□□ -1.5
CDC40	YDR364C	SGS1	P35187	1447 aa		5.65	□□□□□ -1.5
CDC40	YDR364C	LEU3	P08638	886 aa		5.65	□□□□□ -1.51
CDC40	YDR364C	MCM1	P11746	286 aa		5.65	□□□□□ -1.51
CDC40	YDR364C	RGP1	P16664	663 aa		5.65	□□□□□ -1.51
CDC40	YDR364C	IRC24	P40580	263 aa		5.65	□□□□□ -1.51
CDC40	YDR364C	ALD2	P47771	506 aa		5.65	□□□□□ -1.51
CDC40	YDR364C	BIO2	P32451	375 aa		5.64	□□□□□ -1.51
CDC40	YDR364C	ENO2	P00925	437 aa	Known RBP	5.63	□□□□□ -1.51
CDC40	YDR364C	PKC1	P24583	1151 aa		5.63	□□□□□ -1.51
CDC40	YDR364C	MAC1	P35192	417 aa		5.63	□□□□□ -1.51
CDC40	YDR364C	TPS3	P38426	1054 aa	Known RBP	5.63	□□□□□ -1.51
CDC40	YDR364C	AIM9	P40053	627 aa	Known RBP	5.63	□□□□□ -1.51
CDC40	YDR364C	YNL165W	P53891	406 aa		5.63	□□□□□ -1.51
CDC40	YDR364C	MON2	P48563	1636 aa	Predicted RBP	5.62	□□□□□ -1.51
CDC40	YDR364C	RPS6A	P0CX37	236 aa	Known RBP	5.61	□□□□□ -1.51
CDC40	YDR364C	RPS6B	P0CX38	236 aa	Predicted RBP	5.61	□□□□□ -1.51
CDC40	YDR364C	YFL034W	P43564	1073 aa		5.61	□□□□□ -1.51
CDC40	YDR364C	YNL108C	P53929	270 aa		5.61	□□□□□ -1.51
CDC40	YDR364C	RDS2	P19541	446 aa	Known RBP	5.6	□□□□□ -1.51
CDC40	YDR364C	YTA6	P40328	754 aa		5.6	□□□□□ -1.51
CDC40	YDR364C	RIM21	P48565	533 aa		5.6	□□□□□ -1.51
CDC40	YDR364C	BUD9	P53226	547 aa		5.6	□□□□□ -1.51
CDC40	YDR364C	HEH2	Q03281	663 aa		5.6	□□□□□ -1.51
CDC40	YDR364C	NHA1	Q99271	985 aa		5.6	□□□□□ -1.51
CDC40	YDR364C	INO80	P53115	1489 aa		5.59	□□□□□ -1.51
CDC40	YDR364C	NTH2	P35172	780 aa		5.58	□□□□□ -1.52
CDC40	YDR364C	INP52	P50942	1183 aa		5.58	□□□□□ -1.52
CDC40	YDR364C	ALO1	P54783	526 aa	Known RBP	5.58	□□□□□ -1.52
CDC40	YDR364C	PGM2	P37012	569 aa	Known RBP	5.56	□□□□□ -1.52
CDC40	YDR364C	ALG14	P38242	237 aa		5.56	□□□□□ -1.52
CDC40	YDR364C	MLF3	P32047	452 aa		5.55	□□□□□ -1.52
CDC40	YDR364C	PRK1	P40494	810 aa		5.55	□□□□□ -1.52
CDC40	YDR364C	Q0182	Q9ZZW1	134 aa		5.55	□□□□□ -1.52
CDC40	YDR364C	OMA1	P36163	345 aa		5.55	□□□□□ -1.52
CDC40	YDR364C	SKP1	P52286	194 aa		5.55	□□□□□ -1.52
CDC40	YDR364C	AI3	P03877	415 aa		5.54	□□□□□ -1.52
CDC40	YDR364C	TSC13	Q99190	310 aa		5.54	□□□□□ -1.52
CDC40	YDR364C	TCB3	Q03640	1545 aa	Known RBP	5.53	□□□□□ -1.52
CDC40	YDR364C	PGM1	P33401	570 aa	Known RBP	5.53	□□□□□ -1.52
CDC40	YDR364C	GIS4	Q04233	774 aa		5.53	□□□□□ -1.52
CDC40	YDR364C	MRX10	Q05648	414 aa		5.53	□□□□□ -1.52
CDC40	YDR364C	PDI1	P17967	522 aa	Known RBP	5.52	□□□□□ -1.53
CDC40	YDR364C	NAR1	P23503	491 aa	Known RBP	5.52	□□□□□ -1.53
CDC40	YDR364C	UTP4	Q06679	776 aa	Known RBP	5.52	□□□□□ -1.53
CDC40	YDR364C	NCL1	P38205	684 aa	Known RBP	5.51	□□□□□ -1.53

Retrieved 100 of 5,963 RNA–protein pairs in 123.4 ms