RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PCF11	YDR228C	TBS1	P38114	1094 aa		4.37	□□□□□ -1.71
PCF11	YDR228C	UBP15	P50101	1230 aa		4.37	□□□□□ -1.71
PCF11	YDR228C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.37	□□□□□ -1.71	not detected
PCF11	YDR228C	RTG2	P32608	588 aa	Known RBP	4.36	□□□□□ -1.71
PCF11	YDR228C	YPQ2	Q06328	317 aa		4.36	□□□□□ -1.71
PCF11	YDR228C	DPH6	Q12429	685 aa		4.36	□□□□□ -1.71
PCF11	YDR228C	JJJ3	P47138	172 aa		4.35	□□□□□ -1.71
PCF11	YDR228C	LYS5	P50113	272 aa		4.35	□□□□□ -1.71
PCF11	YDR228C	UTP7	P40055	554 aa	Known RBP	4.35	□□□□□ -1.71
PCF11	YDR228C	CUZ1	P53899	274 aa		4.35	□□□□□ -1.71
PCF11	YDR228C	SWI5	P08153	709 aa		4.34	□□□□□ -1.71
PCF11	YDR228C	AIM9	P40053	627 aa	Known RBP	4.34	□□□□□ -1.71
PCF11	YDR228C	SHM1	P37292	490 aa	Predicted RBP	4.33	□□□□□ -1.72
PCF11	YDR228C	JJJ2	P46997	583 aa		4.33	□□□□□ -1.72
PCF11	YDR228C	RPL34B	P40525	121 aa	Known RBP	4.32	□□□□□ -1.72
PCF11	YDR228C	DMA2	P53924	522 aa		4.32	□□□□□ -1.72
PCF11	YDR228C	TSC13	Q99190	310 aa		4.32	□□□□□ -1.72
PCF11	YDR228C	RPS31	P05759	152 aa	Known RBP	4.32	□□□□□ -1.72
PCF11	YDR228C	DIT1	P21623	536 aa		4.32	□□□□□ -1.72
PCF11	YDR228C	AHP1	P38013	176 aa	Known RBP	4.32	□□□□□ -1.72
PCF11	YDR228C	YFL034W	P43564	1073 aa		4.32	□□□□□ -1.72
PCF11	YDR228C	MCM1	P11746	286 aa		4.31	□□□□□ -1.72
PCF11	YDR228C	IRE1	P32361	1115 aa		4.31	□□□□□ -1.72
PCF11	YDR228C	YDR461C-A	Q2V2P7	80 aa		4.31	□□□□□ -1.72
PCF11	YDR228C	RPS6A	P0CX37	236 aa	Known RBP	4.3	□□□□□ -1.72
PCF11	YDR228C	RPS6B	P0CX38	236 aa	Predicted RBP	4.3	□□□□□ -1.72
PCF11	YDR228C	SIS2	P36024	562 aa		4.3	□□□□□ -1.72
PCF11	YDR228C	SYT1	Q06836	1226 aa		4.3	□□□□□ -1.72
PCF11	YDR228C	YPR204W	Q08995	1032 aa		4.3	□□□□□ -1.72
PCF11	YDR228C	ALA1	P40825	983 aa	Known RBP	4.3	□□□□□ -1.72
PCF11	YDR228C	PSH1	Q12161	406 aa		4.3	□□□□□ -1.72
PCF11	YDR228C	PDI1	P17967	522 aa	Known RBP	4.29	□□□□□ -1.72
PCF11	YDR228C	NTH2	P35172	780 aa		4.29	□□□□□ -1.72
PCF11	YDR228C	PDC6	P26263	563 aa	Known RBP	4.28	□□□□□ -1.72
PCF11	YDR228C	CEM1	P39525	442 aa		4.28	□□□□□ -1.72
PCF11	YDR228C	YMR265C	Q03508	461 aa	Known RBP	4.28	□□□□□ -1.72
PCF11	YDR228C	PHO87	P25360	923 aa		4.28	□□□□□ -1.72
PCF11	YDR228C	ACS2	P52910	683 aa	Known RBP	4.28	□□□□□ -1.72
PCF11	YDR228C	LEU1	P07264	779 aa	Known RBP	4.27	□□□□□ -1.73
PCF11	YDR228C	UBP1	P25037	809 aa		4.27	□□□□□ -1.73
PCF11	YDR228C	YNL165W	P53891	406 aa		4.27	□□□□□ -1.73
PCF11	YDR228C	KRE33	P53914	1056 aa	Known RBP	4.27	□□□□□ -1.73
PCF11	YDR228C	TTI1	P36097	1038 aa		4.26	□□□□□ -1.73
PCF11	YDR228C	ICP55	P40051	511 aa		4.26	□□□□□ -1.73
PCF11	YDR228C	YFL066C	P43538	392 aa		4.26	□□□□□ -1.73
PCF11	YDR228C	GAL2	P13181	574 aa		4.26	□□□□□ -1.73
PCF11	YDR228C	HAP4	P14064	554 aa		4.26	□□□□□ -1.73
PCF11	YDR228C	ALD2	P47771	506 aa		4.26	□□□□□ -1.73
PCF11	YDR228C	ADE12	P80210	433 aa	Known RBP	4.26	□□□□□ -1.73
PCF11	YDR228C	GAS4	Q08271	471 aa		4.26	□□□□□ -1.73
PCF11	YDR228C	CYT1	P07143	309 aa		4.25	□□□□□ -1.73
PCF11	YDR228C	SPR3	P41901	512 aa		4.25	□□□□□ -1.73
PCF11	YDR228C	MRPL16	P38064	232 aa		4.24	□□□□□ -1.73
PCF11	YDR228C	ROM1	P53046	1155 aa		4.24	□□□□□ -1.73
PCF11	YDR228C	MTC5	Q03897	1148 aa		4.24	□□□□□ -1.73
PCF11	YDR228C	NGR1	P32831	672 aa	Known RBP	4.24	□□□□□ -1.73
PCF11	YDR228C	KTR7	P40504	517 aa		4.24	□□□□□ -1.73
PCF11	YDR228C	UTP4	Q06679	776 aa	Known RBP	4.24	□□□□□ -1.73
PCF11	YDR228C	AI1	P03875	834 aa		4.23	□□□□□ -1.73
PCF11	YDR228C	MDJ1	P35191	511 aa		4.23	□□□□□ -1.73
PCF11	YDR228C	TGL4	P36165	910 aa		4.23	□□□□□ -1.73
PCF11	YDR228C	PHM7	Q12252	991 aa		4.23	□□□□□ -1.73
PCF11	YDR228C	MLF3	P32047	452 aa		4.22	□□□□□ -1.73
PCF11	YDR228C	HXT5	P38695	592 aa		4.22	□□□□□ -1.73
PCF11	YDR228C	GPM1	P00950	247 aa	Known RBP	4.22	□□□□□ -1.73
PCF11	YDR228C	RGP1	P16664	663 aa		4.22	□□□□□ -1.73
PCF11	YDR228C	FPS1	P23900	669 aa		4.22	□□□□□ -1.73
PCF11	YDR228C	STB3	Q12427	513 aa		4.22	□□□□□ -1.73
PCF11	YDR228C	Q0182	Q9ZZW1	134 aa		4.22	□□□□□ -1.73
PCF11	YDR228C	MSC7	P38694	644 aa		4.21	□□□□□ -1.74
PCF11	YDR228C	SCD5	P34758	872 aa		4.2	□□□□□ -1.74
PCF11	YDR228C	SKP1	P52286	194 aa		4.2	□□□□□ -1.74
PCF11	YDR228C	TY1A-DR2	Q03964	440 aa	Known RBP	4.2	□□□□□ -1.74
PCF11	YDR228C	RPP1A	P05318	106 aa	Predicted RBP	4.2	□□□□□ -1.74
PCF11	YDR228C	PUP1	P25043	261 aa		4.2	□□□□□ -1.74
PCF11	YDR228C	YTA6	P40328	754 aa		4.2	□□□□□ -1.74
PCF11	YDR228C	NSG2	P53898	299 aa		4.2	□□□□□ -1.74
PCF11	YDR228C	THI72	Q08579	599 aa		4.2	□□□□□ -1.74
PCF11	YDR228C	PUS1	Q12211	544 aa	Known RBP	4.2	□□□□□ -1.74
PCF11	YDR228C	KNS1	P32350	737 aa	Predicted RBP	4.19	□□□□□ -1.74
PCF11	YDR228C	SUV3	P32580	737 aa		4.19	□□□□□ -1.74
PCF11	YDR228C	VAN1	P23642	535 aa		4.18	□□□□□ -1.74
PCF11	YDR228C	ECM23	Q02710	187 aa		4.18	□□□□□ -1.74
PCF11	YDR228C	PDC5	P16467	563 aa	Known RBP	4.18	□□□□□ -1.74
PCF11	YDR228C	RPC31	P17890	251 aa		4.18	□□□□□ -1.74
PCF11	YDR228C	SBE2	P42223	864 aa	Known RBP	4.18	□□□□□ -1.74
PCF11	YDR228C	CPS1	P27614	576 aa		4.17	□□□□□ -1.74
PCF11	YDR228C	KAP122	P32767	1081 aa		4.17	□□□□□ -1.74
PCF11	YDR228C	CAB1	Q04430	367 aa		4.17	□□□□□ -1.74
PCF11	YDR228C	SKN7	P38889	622 aa		4.16	□□□□□ -1.74
PCF11	YDR228C	MCX1	P38323	520 aa	Predicted RBP	4.15	□□□□□ -1.74
PCF11	YDR228C	MTO1	P53070	669 aa		4.15	□□□□□ -1.74
PCF11	YDR228C	HEH2	Q03281	663 aa		4.15	□□□□□ -1.74
PCF11	YDR228C	TDA6	Q06466	467 aa		4.15	□□□□□ -1.74
PCF11	YDR228C	TRS33	Q99394	268 aa		4.15	□□□□□ -1.74
PCF11	YDR228C	UBX7	P38349	436 aa		4.15	□□□□□ -1.75
PCF11	YDR228C	CUS1	Q02554	436 aa	Predicted RBP	4.15	□□□□□ -1.75
PCF11	YDR228C	YBR197C	P38306	217 aa		4.14	□□□□□ -1.75
PCF11	YDR228C	LSB3	P43603	459 aa	Known RBP	4.14	□□□□□ -1.75
PCF11	YDR228C	CCT8	P47079	568 aa	Known RBP	4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms