RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C CBC2Q08920 208 aaKnown RBP RIP-Chip data6.41□□□□□ -1.38 RIP-Chip
RUB1YDR139C GAL2P13181 574 aa6.4□□□□□ -1.38
RUB1YDR139C PHO87P25360 923 aa6.4□□□□□ -1.38
RUB1YDR139C TY1A-MR1Q04215 440 aa6.4□□□□□ -1.38
RUB1YDR139C HDA3Q06623 655 aa6.4□□□□□ -1.38
RUB1YDR139C HAP4P14064 554 aa6.39□□□□□ -1.39
RUB1YDR139C TBS1P38114 1094 aa6.39□□□□□ -1.39
RUB1YDR139C AIM9P40053 627 aaKnown RBP6.39□□□□□ -1.39
RUB1YDR139C ECM23Q02710 187 aa6.39□□□□□ -1.39
RUB1YDR139C TSC13Q99190 310 aa6.39□□□□□ -1.39
RUB1YDR139C ARG82P07250 355 aa6.38□□□□□ -1.39
RUB1YDR139C DAT1P13483 248 aaKnown RBP6.38□□□□□ -1.39
RUB1YDR139C OSH7P38755 437 aa6.38□□□□□ -1.39
RUB1YDR139C ICP55P40051 511 aa6.38□□□□□ -1.39
RUB1YDR139C NAM8Q00539 523 aaKnown RBP6.38□□□□□ -1.39
RUB1YDR139C NOB1Q08444 459 aaKnown RBP6.38□□□□□ -1.39
RUB1YDR139C SSA1P10591 642 aaKnown RBP6.37□□□□□ -1.39
RUB1YDR139C PDI1P17967 522 aaKnown RBP6.37□□□□□ -1.39
RUB1YDR139C ACS2P52910 683 aaKnown RBP6.37□□□□□ -1.39
RUB1YDR139C WTM2Q12206 467 aa6.37□□□□□ -1.39
RUB1YDR139C DLD3P39976 496 aaKnown RBP6.36□□□□□ -1.39
RUB1YDR139C SLX8P40072 274 aa6.36□□□□□ -1.39
RUB1YDR139C UBP2Q01476 1272 aa6.36□□□□□ -1.39
RUB1YDR139C GAS4Q08271 471 aa6.36□□□□□ -1.39
RUB1YDR139C YML083CQ04526 418 aa6.35□□□□□ -1.39
RUB1YDR139C NTH2P35172 780 aa6.34□□□□□ -1.39
RUB1YDR139C UBX7P38349 436 aa6.34□□□□□ -1.39
RUB1YDR139C SWI5P08153 709 aa6.33□□□□□ -1.4
RUB1YDR139C RPS6AP0CX37 236 aaKnown RBP6.33□□□□□ -1.4
RUB1YDR139C RPS6BP0CX38 236 aaPredicted RBP6.33□□□□□ -1.4
RUB1YDR139C ROM1P53046 1155 aa6.32□□□□□ -1.4
RUB1YDR139C RPL34AP87262 121 aaPredicted RBP6.32□□□□□ -1.4
RUB1YDR139C PUS1Q12211 544 aaKnown RBP6.32□□□□□ -1.4
RUB1YDR139C GEF1P37020 779 aa6.31□□□□□ -1.4
RUB1YDR139C CYT1P07143 309 aa6.3□□□□□ -1.4
RUB1YDR139C VAN1P23642 535 aa6.29□□□□□ -1.4
RUB1YDR139C UTP7P40055 554 aaKnown RBP6.29□□□□□ -1.4
RUB1YDR139C SUM1P46676 1062 aa6.29□□□□□ -1.4
RUB1YDR139C THI72Q08579 599 aa6.29□□□□□ -1.4
RUB1YDR139C TRS33Q99394 268 aa6.29□□□□□ -1.4
RUB1YDR139C UBP1P25037 809 aa6.28□□□□□ -1.4
RUB1YDR139C YFL066CP43538 392 aa6.28□□□□□ -1.4
RUB1YDR139C NSG2P53898 299 aa6.28□□□□□ -1.4
RUB1YDR139C PUF6Q04373 656 aaKnown RBP6.28□□□□□ -1.4
RUB1YDR139C NRD1P53617 575 aaKnown RBP RIP-Chip data6.27□□□□□ -1.41 RIP-Chip
RUB1YDR139C CWH41P53008 833 aa6.26□□□□□ -1.41
RUB1YDR139C CDC19P00549 500 aaKnown RBP6.25□□□□□ -1.41
RUB1YDR139C MCM1P11746 286 aa6.25□□□□□ -1.41
RUB1YDR139C ALA1P40825 983 aaKnown RBP6.25□□□□□ -1.41
RUB1YDR139C MSN5P52918 1224 aa6.25□□□□□ -1.41
RUB1YDR139C YPQ2Q06328 317 aa6.25□□□□□ -1.41
RUB1YDR139C NGR1P32831 672 aaKnown RBP6.24□□□□□ -1.41
RUB1YDR139C SSN3P39073 555 aa6.24□□□□□ -1.41
RUB1YDR139C VTC4P47075 721 aa6.24□□□□□ -1.41
RUB1YDR139C DPH6Q12429 685 aa6.24□□□□□ -1.41
RUB1YDR139C JJJ3P47138 172 aa6.23□□□□□ -1.41
RUB1YDR139C CWC15Q03772 175 aaKnown RBP6.23□□□□□ -1.41
RUB1YDR139C PUN1Q06991 263 aa6.23□□□□□ -1.41
RUB1YDR139C SRS2P12954 1174 aa6.22□□□□□ -1.41
RUB1YDR139C DAL1P32375 460 aa6.22□□□□□ -1.41
RUB1YDR139C CDC3P32457 520 aaKnown RBP6.22□□□□□ -1.41
RUB1YDR139C AHP1P38013 176 aaKnown RBP6.22□□□□□ -1.41
RUB1YDR139C ALD4P46367 519 aaKnown RBP6.2□□□□□ -1.42
RUB1YDR139C JJJ2P46997 583 aa6.2□□□□□ -1.42
RUB1YDR139C CCT8P47079 568 aaKnown RBP6.2□□□□□ -1.42
RUB1YDR139C CUZ1P53899 274 aa6.2□□□□□ -1.42
RUB1YDR139C PNP1Q05788 311 aa6.2□□□□□ -1.42
RUB1YDR139C PHM7Q12252 991 aa6.2□□□□□ -1.42
RUB1YDR139C SUV3P32580 737 aa6.19□□□□□ -1.42
RUB1YDR139C TPS3P38426 1054 aaKnown RBP6.19□□□□□ -1.42
RUB1YDR139C SBE2P42223 864 aaKnown RBP6.19□□□□□ -1.42
RUB1YDR139C SCD5P34758 872 aa6.18□□□□□ -1.42
RUB1YDR139C LYS5P50113 272 aa6.18□□□□□ -1.42
RUB1YDR139C IRE1P32361 1115 aa6.17□□□□□ -1.42
RUB1YDR139C SLA1P32790 1244 aa6.17□□□□□ -1.42
RUB1YDR139C SHM1P37292 490 aaPredicted RBP6.16□□□□□ -1.42
RUB1YDR139C HXT5P38695 592 aa6.16□□□□□ -1.42
RUB1YDR139C YTA6P40328 754 aa6.16□□□□□ -1.42
RUB1YDR139C UBP15P50101 1230 aa6.16□□□□□ -1.42
RUB1YDR139C CAB1Q04430 367 aa6.16□□□□□ -1.42
RUB1YDR139C TY1A-DR3Q12441 440 aa6.16□□□□□ -1.42
RUB1YDR139C FUR4P05316 633 aaKnown RBP6.15□□□□□ -1.42
RUB1YDR139C RRN6P32786 894 aa6.15□□□□□ -1.42
RUB1YDR139C FOX2Q02207 900 aaKnown RBP6.15□□□□□ -1.42
RUB1YDR139C UTP4Q06679 776 aaKnown RBP6.15□□□□□ -1.42
RUB1YDR139C Q0182Q9ZZW1 134 aa6.15□□□□□ -1.42
RUB1YDR139C MLF3P32047 452 aa6.14□□□□□ -1.43
RUB1YDR139C YBR197CP38306 217 aa6.14□□□□□ -1.43
RUB1YDR139C YNL165WP53891 406 aa6.14□□□□□ -1.43
RUB1YDR139C KAR5Q04746 504 aa6.14□□□□□ -1.43
RUB1YDR139C RPS31P05759 152 aaKnown RBP6.13□□□□□ -1.43
RUB1YDR139C ISC10P32645 267 aa6.13□□□□□ -1.43
RUB1YDR139C PDC6P26263 563 aaKnown RBP6.12□□□□□ -1.43
RUB1YDR139C PSH1Q12161 406 aa6.12□□□□□ -1.43
RUB1YDR139C HAT1Q12341 374 aa6.12□□□□□ -1.43
RUB1YDR139C MRPL33P20084 86 aa6.11□□□□□ -1.43
RUB1YDR139C BOL3P39724 118 aa6.11□□□□□ -1.43
RUB1YDR139C LSO1Q3E827 93 aa6.1□□□□□ -1.43
RUB1YDR139C AI1P03875 834 aa6.09□□□□□ -1.43
RUB1YDR139C LEU1P07264 779 aaKnown RBP6.09□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms