RNA–Protein interactions for RNA: YBR278W

DPB3, Transcript of Third-largest subunit of DNA polymerase II (DNA polymerase epsilon), yeast

Gene DPB3, Length 606 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DPB3	YBR278W	ASF1	P32447	279 aa		4.94	□□□□□ -1.62
DPB3	YBR278W	GRS1	P38088	690 aa	Known RBP	4.94	□□□□□ -1.62
DPB3	YBR278W	BOL3	P39724	118 aa		4.94	□□□□□ -1.62
DPB3	YBR278W	AIM9	P40053	627 aa	Known RBP	4.94	□□□□□ -1.62
DPB3	YBR278W	ATG1	P53104	897 aa		4.94	□□□□□ -1.62
DPB3	YBR278W	CAF120	P53836	1060 aa		4.94	□□□□□ -1.62
DPB3	YBR278W	PNP1	Q05788	311 aa		4.94	□□□□□ -1.62
DPB3	YBR278W	OPT2	Q06593	877 aa		4.94	□□□□□ -1.62
DPB3	YBR278W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
DPB3	YBR278W	TRL1	P09880	827 aa	Known RBP	4.93	□□□□□ -1.62
DPB3	YBR278W	SRS2	P12954	1174 aa		4.93	□□□□□ -1.62
DPB3	YBR278W	YHL050C	P38721	697 aa		4.93	□□□□□ -1.62
DPB3	YBR278W	YHR219W	P38900	624 aa		4.93	□□□□□ -1.62
DPB3	YBR278W	YFL034W	P43564	1073 aa		4.93	□□□□□ -1.62
DPB3	YBR278W	NUP85	P46673	744 aa		4.93	□□□□□ -1.62
DPB3	YBR278W	ORC1	P54784	914 aa	Predicted RBP	4.93	□□□□□ -1.62
DPB3	YBR278W	ITT1	Q04638	464 aa		4.93	□□□□□ -1.62
DPB3	YBR278W	PUN1	Q06991	263 aa		4.93	□□□□□ -1.62
DPB3	YBR278W	VAN1	P23642	535 aa		4.92	□□□□□ -1.62
DPB3	YBR278W	PAM1	P37304	830 aa	Known RBP	4.92	□□□□□ -1.62
DPB3	YBR278W	PPX1	P38698	397 aa		4.92	□□□□□ -1.62
DPB3	YBR278W	ATG20	Q07528	640 aa		4.92	□□□□□ -1.62
DPB3	YBR278W	MSC6	Q08818	692 aa	Known RBP	4.92	□□□□□ -1.62
DPB3	YBR278W	TRS33	Q99394	268 aa		4.92	□□□□□ -1.62
DPB3	YBR278W	UBP1	P25037	809 aa		4.91	□□□□□ -1.62
DPB3	YBR278W	MDJ2	P42834	146 aa		4.91	□□□□□ -1.62
DPB3	YBR278W	HDA3	Q06623	655 aa		4.91	□□□□□ -1.62
DPB3	YBR278W	FUR4	P05316	633 aa	Known RBP	4.9	□□□□□ -1.63
DPB3	YBR278W	ARG82	P07250	355 aa		4.9	□□□□□ -1.63
DPB3	YBR278W	ACO2	P39533	789 aa		4.9	□□□□□ -1.63
DPB3	YBR278W	ALD4	P46367	519 aa	Known RBP	4.9	□□□□□ -1.63
DPB3	YBR278W	SCW11	P53189	542 aa		4.9	□□□□□ -1.63
DPB3	YBR278W	SUV3	P32580	737 aa		4.89	□□□□□ -1.63
DPB3	YBR278W	GLY1	P37303	387 aa	Known RBP	4.89	□□□□□ -1.63
DPB3	YBR278W	GLO3	P38682	493 aa	Known RBP	4.89	□□□□□ -1.63
DPB3	YBR278W	RRP15	Q06511	250 aa	Predicted RBP	4.89	□□□□□ -1.63
DPB3	YBR278W	WHI5	Q12416	295 aa		4.89	□□□□□ -1.63
DPB3	YBR278W	CYT1	P07143	309 aa		4.88	□□□□□ -1.63
DPB3	YBR278W	RPS6A	P0CX37	236 aa	Known RBP	4.88	□□□□□ -1.63
DPB3	YBR278W	RPS6B	P0CX38	236 aa	Predicted RBP	4.88	□□□□□ -1.63
DPB3	YBR278W	NTH2	P35172	780 aa		4.88	□□□□□ -1.63
DPB3	YBR278W	QDR1	P40475	563 aa		4.88	□□□□□ -1.63
DPB3	YBR278W	EMW1	P42842	904 aa	Known RBP	4.88	□□□□□ -1.63
DPB3	YBR278W	LSC2	P53312	427 aa		4.88	□□□□□ -1.63
DPB3	YBR278W	SPT2	P06843	333 aa	Predicted RBP	4.87	□□□□□ -1.63
DPB3	YBR278W	UTR2	P32623	467 aa		4.87	□□□□□ -1.63
DPB3	YBR278W	YBL086C	P38177	466 aa		4.87	□□□□□ -1.63
DPB3	YBR278W	POL32	P47110	350 aa		4.87	□□□□□ -1.63
DPB3	YBR278W	ALD2	P47771	506 aa		4.87	□□□□□ -1.63
DPB3	YBR278W	APP1	P53933	587 aa		4.87	□□□□□ -1.63
DPB3	YBR278W	UBP2	Q01476	1272 aa		4.87	□□□□□ -1.63
DPB3	YBR278W	NUT2	Q06213	157 aa		4.87	□□□□□ -1.63
DPB3	YBR278W	AIM44	Q99299	758 aa		4.87	□□□□□ -1.63
DPB3	YBR278W	SWI5	P08153	709 aa		4.86	□□□□□ -1.63
DPB3	YBR278W	FBP26	P32604	452 aa		4.86	□□□□□ -1.63
DPB3	YBR278W	MET10	P39692	1035 aa		4.86	□□□□□ -1.63
DPB3	YBR278W	AAD14	P42884	376 aa		4.86	□□□□□ -1.63
DPB3	YBR278W	ACF4	P47129	309 aa		4.86	□□□□□ -1.63
DPB3	YBR278W	CWH41	P53008	833 aa		4.86	□□□□□ -1.63
DPB3	YBR278W	YGR035C	P53222	116 aa		4.86	□□□□□ -1.63
DPB3	YBR278W	FRT1	Q99332	602 aa		4.86	□□□□□ -1.63
DPB3	YBR278W	ATE1	P16639	503 aa		4.85	□□□□□ -1.63
DPB3	YBR278W	NGR1	P32831	672 aa	Known RBP	4.85	□□□□□ -1.63
DPB3	YBR278W	YIR007W	P40566	764 aa		4.85	□□□□□ -1.63
DPB3	YBR278W	THI12	P42883	340 aa		4.85	□□□□□ -1.63
DPB3	YBR278W	THI5	P43534	340 aa		4.85	□□□□□ -1.63
DPB3	YBR278W	THI11	P47183	340 aa		4.85	□□□□□ -1.63
DPB3	YBR278W	ISU1	Q03020	165 aa		4.85	□□□□□ -1.63
DPB3	YBR278W	THI13	Q07748	340 aa		4.85	□□□□□ -1.63
DPB3	YBR278W	TY1A-BL	Q12266	440 aa		4.85	□□□□□ -1.63
DPB3	YBR278W	LSO1	Q3E827	93 aa		4.85	□□□□□ -1.63
DPB3	YBR278W	MKS1	P34072	584 aa		4.84	□□□□□ -1.63
DPB3	YBR278W	BOI1	P38041	980 aa	Known RBP	4.84	□□□□□ -1.63
DPB3	YBR278W	FOX2	Q02207	900 aa	Known RBP	4.84	□□□□□ -1.63
DPB3	YBR278W	CAB1	Q04430	367 aa		4.84	□□□□□ -1.63
DPB3	YBR278W	TRK2	P28584	889 aa		4.83	□□□□□ -1.64
DPB3	YBR278W	DLD1	P32891	587 aa		4.83	□□□□□ -1.64
DPB3	YBR278W	SPR3	P41901	512 aa		4.83	□□□□□ -1.64
DPB3	YBR278W	STB3	Q12427	513 aa		4.83	□□□□□ -1.64
DPB3	YBR278W	RPB10	P22139	70 aa		4.82	□□□□□ -1.64
DPB3	YBR278W	ISC10	P32645	267 aa		4.82	□□□□□ -1.64
DPB3	YBR278W	TBS1	P38114	1094 aa		4.82	□□□□□ -1.64
DPB3	YBR278W	YBR197C	P38306	217 aa		4.82	□□□□□ -1.64
DPB3	YBR278W	TCB1	Q12466	1186 aa		4.82	□□□□□ -1.64
DPB3	YBR278W	RPP2B	P02400	110 aa	Known RBP	4.81	□□□□□ -1.64
DPB3	YBR278W	STE6	P12866	1290 aa		4.81	□□□□□ -1.64
DPB3	YBR278W	MET4	P32389	672 aa		4.81	□□□□□ -1.64
DPB3	YBR278W	YJR098C	P47139	656 aa		4.81	□□□□□ -1.64
DPB3	YBR278W	TRS120	Q04183	1289 aa		4.81	□□□□□ -1.64
DPB3	YBR278W	HPF1	Q05164	967 aa		4.81	□□□□□ -1.64
DPB3	YBR278W	WTM2	Q12206	467 aa		4.81	□□□□□ -1.64
DPB3	YBR278W	MCM1	P11746	286 aa		4.8	□□□□□ -1.64
DPB3	YBR278W	DAT1	P13483	248 aa	Known RBP	4.8	□□□□□ -1.64
DPB3	YBR278W	YJR107W	P47145	328 aa		4.8	□□□□□ -1.64
DPB3	YBR278W	DFG5	Q05031	458 aa		4.8	□□□□□ -1.64
DPB3	YBR278W	APC11	Q12157	165 aa		4.8	□□□□□ -1.64
DPB3	YBR278W	MGE1	P38523	228 aa		4.79	□□□□□ -1.64
DPB3	YBR278W	HXT5	P38695	592 aa		4.79	□□□□□ -1.64
DPB3	YBR278W	UFD2	P54860	961 aa		4.79	□□□□□ -1.64
DPB3	YBR278W	OYE2	Q03558	400 aa	Known RBP	4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 31.2 ms