RNA–Protein interactions for RNA: YBR165W

UBS1, Transcript of Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p, yeast

Gene UBS1, Length 834 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBS1	YBR165W	CPS1	P27614	576 aa		8.45	□□□□□ -1.06
UBS1	YBR165W	ACS2	P52910	683 aa	Known RBP	8.45	□□□□□ -1.06
UBS1	YBR165W	HAP4	P14064	554 aa		8.44	□□□□□ -1.06
UBS1	YBR165W	YDL176W	Q12027	708 aa		8.44	□□□□□ -1.06
UBS1	YBR165W	RPS6A	P0CX37	236 aa	Known RBP	8.43	□□□□□ -1.06
UBS1	YBR165W	RPS6B	P0CX38	236 aa	Predicted RBP	8.43	□□□□□ -1.06
UBS1	YBR165W	NTH2	P35172	780 aa		8.43	□□□□□ -1.06
UBS1	YBR165W	OSH7	P38755	437 aa		8.43	□□□□□ -1.06
UBS1	YBR165W	YPQ2	Q06328	317 aa		8.43	□□□□□ -1.06
UBS1	YBR165W	SSA4	P22202	642 aa	Known RBP	8.42	□□□□□ -1.06
UBS1	YBR165W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	8.42	□□□□□ -1.06	not detected
UBS1	YBR165W	UTP7	P40055	554 aa	Known RBP	8.42	□□□□□ -1.06
UBS1	YBR165W	GAS4	Q08271	471 aa		8.42	□□□□□ -1.06
UBS1	YBR165W	PUP1	P25043	261 aa		8.41	□□□□□ -1.06
UBS1	YBR165W	SLA1	P32790	1244 aa		8.41	□□□□□ -1.06
UBS1	YBR165W	CDC19	P00549	500 aa	Known RBP	8.39	□□□□□ -1.07
UBS1	YBR165W	YPL062W	Q02781	134 aa		8.39	□□□□□ -1.07
UBS1	YBR165W	MCM1	P11746	286 aa		8.38	□□□□□ -1.07
UBS1	YBR165W	UBP1	P25037	809 aa		8.38	□□□□□ -1.07
UBS1	YBR165W	ROM1	P53046	1155 aa		8.38	□□□□□ -1.07
UBS1	YBR165W	CAF120	P53836	1060 aa		8.38	□□□□□ -1.07
UBS1	YBR165W	TY1A-DR3	Q12441	440 aa		8.38	□□□□□ -1.07
UBS1	YBR165W	CYT1	P07143	309 aa		8.37	□□□□□ -1.07
UBS1	YBR165W	ECM23	Q02710	187 aa		8.37	□□□□□ -1.07
UBS1	YBR165W	YIR007W	P40566	764 aa		8.36	□□□□□ -1.07
UBS1	YBR165W	JJJ2	P46997	583 aa		8.36	□□□□□ -1.07
UBS1	YBR165W	TY1A-MR1	Q04215	440 aa		8.36	□□□□□ -1.07
UBS1	YBR165W	AHP1	P38013	176 aa	Known RBP	8.35	□□□□□ -1.07
UBS1	YBR165W	ALA1	P40825	983 aa	Known RBP	8.35	□□□□□ -1.07
UBS1	YBR165W	ROG3	P43602	733 aa		8.35	□□□□□ -1.07
UBS1	YBR165W	UBP15	P50101	1230 aa		8.35	□□□□□ -1.07
UBS1	YBR165W	NAM8	Q00539	523 aa	Known RBP	8.34	□□□□□ -1.07
UBS1	YBR165W	NOB1	Q08444	459 aa	Known RBP	8.34	□□□□□ -1.07
UBS1	YBR165W	SUB2	Q07478	446 aa	Known RBP	8.33	□□□□□ -1.08
UBS1	YBR165W	CCP1	P00431	361 aa		8.32	□□□□□ -1.08
UBS1	YBR165W	IRE1	P32361	1115 aa		8.32	□□□□□ -1.08
UBS1	YBR165W	SHM1	P37292	490 aa	Predicted RBP	8.32	□□□□□ -1.08
UBS1	YBR165W	NGR1	P32831	672 aa	Known RBP	8.31	□□□□□ -1.08
UBS1	YBR165W	UBX7	P38349	436 aa		8.31	□□□□□ -1.08
UBS1	YBR165W	RGA1	P39083	1007 aa		8.31	□□□□□ -1.08
UBS1	YBR165W	TAF7	Q05021	590 aa		8.31	□□□□□ -1.08
UBS1	YBR165W	VAN1	P23642	535 aa		8.3	□□□□□ -1.08
UBS1	YBR165W	RPS31	P05759	152 aa	Known RBP	8.29	□□□□□ -1.08
UBS1	YBR165W	YML083C	Q04526	418 aa		8.29	□□□□□ -1.08
UBS1	YBR165W	PUF6	Q04373	656 aa	Known RBP	8.28	□□□□□ -1.08
UBS1	YBR165W	YNL165W	P53891	406 aa		8.27	□□□□□ -1.09
UBS1	YBR165W	TRS33	Q99394	268 aa		8.27	□□□□□ -1.09
UBS1	YBR165W	PDC6	P26263	563 aa	Known RBP	8.26	□□□□□ -1.09
UBS1	YBR165W	PSH1	Q12161	406 aa		8.26	□□□□□ -1.09
UBS1	YBR165W	HXT5	P38695	592 aa		8.25	□□□□□ -1.09
UBS1	YBR165W	SUV3	P32580	737 aa		8.24	□□□□□ -1.09
UBS1	YBR165W	CUZ1	P53899	274 aa		8.24	□□□□□ -1.09
UBS1	YBR165W	UTP4	Q06679	776 aa	Known RBP	8.24	□□□□□ -1.09
UBS1	YBR165W	SCD5	P34758	872 aa		8.23	□□□□□ -1.09
UBS1	YBR165W	CWH41	P53008	833 aa		8.23	□□□□□ -1.09
UBS1	YBR165W	Q0182	Q9ZZW1	134 aa		8.23	□□□□□ -1.09
UBS1	YBR165W	LEU1	P07264	779 aa	Known RBP	8.22	□□□□□ -1.09
UBS1	YBR165W	DIT1	P21623	536 aa		8.22	□□□□□ -1.09
UBS1	YBR165W	MLF3	P32047	452 aa		8.22	□□□□□ -1.09
UBS1	YBR165W	CWC15	Q03772	175 aa	Known RBP	8.22	□□□□□ -1.09
UBS1	YBR165W	HPF1	Q05164	967 aa		8.21	□□□□□ -1.1
UBS1	YBR165W	YTA6	P40328	754 aa		8.2	□□□□□ -1.1
UBS1	YBR165W	ALD2	P47771	506 aa		8.2	□□□□□ -1.1
UBS1	YBR165W	LYS5	P50113	272 aa		8.2	□□□□□ -1.1
UBS1	YBR165W	YGR035C	P53222	116 aa		8.19	□□□□□ -1.1
UBS1	YBR165W	CAB1	Q04430	367 aa		8.19	□□□□□ -1.1
UBS1	YBR165W	SRS2	P12954	1174 aa		8.18	□□□□□ -1.1
UBS1	YBR165W	ALD4	P46367	519 aa	Known RBP	8.18	□□□□□ -1.1
UBS1	YBR165W	YMR265C	Q03508	461 aa	Known RBP	8.18	□□□□□ -1.1
UBS1	YBR165W	DPH6	Q12429	685 aa		8.18	□□□□□ -1.1
UBS1	YBR165W	YDR461C-A	Q2V2P7	80 aa		8.18	□□□□□ -1.1
UBS1	YBR165W	PUN1	Q06991	263 aa		8.17	□□□□□ -1.1
UBS1	YBR165W	SSA1	P10591	642 aa	Known RBP	8.16	□□□□□ -1.1
UBS1	YBR165W	MRPL16	P38064	232 aa		8.16	□□□□□ -1.1
UBS1	YBR165W	YBR197C	P38306	217 aa		8.16	□□□□□ -1.1
UBS1	YBR165W	CEM1	P39525	442 aa		8.16	□□□□□ -1.1
UBS1	YBR165W	JJJ3	P47138	172 aa		8.16	□□□□□ -1.1
UBS1	YBR165W	SYT1	Q06836	1226 aa		8.16	□□□□□ -1.1
UBS1	YBR165W	SPR3	P41901	512 aa		8.15	□□□□□ -1.1
UBS1	YBR165W	KRE33	P53914	1056 aa	Known RBP	8.15	□□□□□ -1.1
UBS1	YBR165W	RGP1	P16664	663 aa		8.14	□□□□□ -1.11
UBS1	YBR165W	TRK2	P28584	889 aa		8.13	□□□□□ -1.11
UBS1	YBR165W	TPS3	P38426	1054 aa	Known RBP	8.13	□□□□□ -1.11
UBS1	YBR165W	STB3	Q12427	513 aa		8.13	□□□□□ -1.11
UBS1	YBR165W	RPP1A	P05318	106 aa	Predicted RBP	8.12	□□□□□ -1.11
UBS1	YBR165W	MRPL33	P20084	86 aa		8.12	□□□□□ -1.11
UBS1	YBR165W	KAP122	P32767	1081 aa		8.12	□□□□□ -1.11
UBS1	YBR165W	SKP1	P52286	194 aa		8.12	□□□□□ -1.11
UBS1	YBR165W	ADE12	P80210	433 aa	Known RBP	8.12	□□□□□ -1.11
UBS1	YBR165W	PNP1	Q05788	311 aa		8.12	□□□□□ -1.11
UBS1	YBR165W	FOX2	Q02207	900 aa	Known RBP	8.11	□□□□□ -1.11
UBS1	YBR165W	RPC31	P17890	251 aa		8.1	□□□□□ -1.11
UBS1	YBR165W	FPS1	P23900	669 aa		8.1	□□□□□ -1.11
UBS1	YBR165W	MTO1	P53070	669 aa		8.1	□□□□□ -1.11
UBS1	YBR165W	RPL34A	P87262	121 aa	Predicted RBP	8.1	□□□□□ -1.11
UBS1	YBR165W	VMA3	P25515	160 aa		8.09	□□□□□ -1.11
UBS1	YBR165W	ISC10	P32645	267 aa		8.09	□□□□□ -1.11
UBS1	YBR165W	QDR2	P40474	542 aa		8.08	□□□□□ -1.12
UBS1	YBR165W	GEF1	P37020	779 aa		8.06	□□□□□ -1.12
UBS1	YBR165W	MSC7	P38694	644 aa		8.06	□□□□□ -1.12

Retrieved 100 of 5,963 RNA–protein pairs in 35.7 ms