RNA–Protein interactions for RNA: YAL059W

ECM1, Transcript of Pre-ribosomal factor involved in 60S ribosomal protein subunit export, yeast

Gene ECM1, Length 639 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ECM1	YAL059W	LSC2	P53312	427 aa		7.39	□□□□□ -1.23
ECM1	YAL059W	GAS4	Q08271	471 aa		7.39	□□□□□ -1.23
ECM1	YAL059W	ROM1	P53046	1155 aa		7.38	□□□□□ -1.23
ECM1	YAL059W	MET22	P32179	357 aa		7.36	□□□□□ -1.23
ECM1	YAL059W	SUM1	P46676	1062 aa		7.36	□□□□□ -1.23
ECM1	YAL059W	OPT2	Q06593	877 aa		7.36	□□□□□ -1.23
ECM1	YAL059W	CYT1	P07143	309 aa		7.35	□□□□□ -1.23
ECM1	YAL059W	TCB1	Q12466	1186 aa		7.35	□□□□□ -1.23
ECM1	YAL059W	SSA1	P10591	642 aa	Known RBP	7.34	□□□□□ -1.23
ECM1	YAL059W	ORC1	P54784	914 aa	Predicted RBP	7.34	□□□□□ -1.23
ECM1	YAL059W	YDR444W	Q04093	687 aa		7.34	□□□□□ -1.23
ECM1	YAL059W	YLR346C	Q06139	101 aa		7.34	□□□□□ -1.23
ECM1	YAL059W	LCB5	Q06147	687 aa	Known RBP	7.34	□□□□□ -1.23
ECM1	YAL059W	UBP1	P25037	809 aa		7.33	□□□□□ -1.24
ECM1	YAL059W	YPQ2	Q06328	317 aa		7.33	□□□□□ -1.24
ECM1	YAL059W	SSN3	P39073	555 aa		7.32	□□□□□ -1.24
ECM1	YAL059W	GLY1	P37303	387 aa	Known RBP	7.31	□□□□□ -1.24
ECM1	YAL059W	VTC4	P47075	721 aa		7.31	□□□□□ -1.24
ECM1	YAL059W	MSN5	P52918	1224 aa		7.31	□□□□□ -1.24
ECM1	YAL059W	VAN1	P23642	535 aa		7.3	□□□□□ -1.24
ECM1	YAL059W	ALA1	P40825	983 aa	Known RBP	7.3	□□□□□ -1.24
ECM1	YAL059W	MCM1	P11746	286 aa		7.29	□□□□□ -1.24
ECM1	YAL059W	SCW11	P53189	542 aa		7.29	□□□□□ -1.24
ECM1	YAL059W	UBP2	Q01476	1272 aa		7.29	□□□□□ -1.24
ECM1	YAL059W	YML020W	Q03722	664 aa		7.29	□□□□□ -1.24
ECM1	YAL059W	TY1A-DR3	Q12441	440 aa		7.29	□□□□□ -1.24
ECM1	YAL059W	TRS33	Q99394	268 aa		7.29	□□□□□ -1.24
ECM1	YAL059W	DAL1	P32375	460 aa		7.28	□□□□□ -1.24
ECM1	YAL059W	AHP1	P38013	176 aa	Known RBP	7.28	□□□□□ -1.24
ECM1	YAL059W	JJJ2	P46997	583 aa		7.28	□□□□□ -1.24
ECM1	YAL059W	RPL34A	P87262	121 aa	Predicted RBP	7.28	□□□□□ -1.24
ECM1	YAL059W	TY1A-BL	Q12266	440 aa		7.28	□□□□□ -1.24
ECM1	YAL059W	GAR1	P28007	205 aa	Known RBP	7.27	□□□□□ -1.25
ECM1	YAL059W	GEF1	P37020	779 aa		7.27	□□□□□ -1.25
ECM1	YAL059W	PUF6	Q04373	656 aa	Known RBP	7.27	□□□□□ -1.25
ECM1	YAL059W	SLA1	P32790	1244 aa		7.26	□□□□□ -1.25
ECM1	YAL059W	NGR1	P32831	672 aa	Known RBP	7.26	□□□□□ -1.25
ECM1	YAL059W	CDC19	P00549	500 aa	Known RBP	7.25	□□□□□ -1.25
ECM1	YAL059W	SUV3	P32580	737 aa		7.25	□□□□□ -1.25
ECM1	YAL059W	SHM1	P37292	490 aa	Predicted RBP	7.25	□□□□□ -1.25
ECM1	YAL059W	TPS3	P38426	1054 aa	Known RBP	7.24	□□□□□ -1.25
ECM1	YAL059W	OSH7	P38755	437 aa		7.24	□□□□□ -1.25
ECM1	YAL059W	CWH41	P53008	833 aa		7.24	□□□□□ -1.25
ECM1	YAL059W	CWC15	Q03772	175 aa	Known RBP	7.24	□□□□□ -1.25
ECM1	YAL059W	PUN1	Q06991	263 aa		7.24	□□□□□ -1.25
ECM1	YAL059W	ALD4	P46367	519 aa	Known RBP	7.23	□□□□□ -1.25
ECM1	YAL059W	YNL165W	P53891	406 aa		7.23	□□□□□ -1.25
ECM1	YAL059W	IRE1	P32361	1115 aa		7.22	□□□□□ -1.25
ECM1	YAL059W	HXT5	P38695	592 aa		7.22	□□□□□ -1.25
ECM1	YAL059W	SRS2	P12954	1174 aa		7.21	□□□□□ -1.26
ECM1	YAL059W	UBP15	P50101	1230 aa		7.21	□□□□□ -1.26
ECM1	YAL059W	CAF120	P53836	1060 aa		7.21	□□□□□ -1.26
ECM1	YAL059W	FOX2	Q02207	900 aa	Known RBP	7.21	□□□□□ -1.26
ECM1	YAL059W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	7.2	□□□□□ -1.26	not detected
ECM1	YAL059W	MLF3	P32047	452 aa		7.2	□□□□□ -1.26
ECM1	YAL059W	ROG3	P43602	733 aa		7.2	□□□□□ -1.26
ECM1	YAL059W	CAB1	Q04430	367 aa		7.2	□□□□□ -1.26
ECM1	YAL059W	NOP8	Q08287	484 aa	Predicted RBP	7.2	□□□□□ -1.26
ECM1	YAL059W	Q0182	Q9ZZW1	134 aa		7.2	□□□□□ -1.26
ECM1	YAL059W	RPS31	P05759	152 aa	Known RBP	7.19	□□□□□ -1.26
ECM1	YAL059W	SCD5	P34758	872 aa		7.19	□□□□□ -1.26
ECM1	YAL059W	ACO2	P39533	789 aa		7.19	□□□□□ -1.26
ECM1	YAL059W	YIR007W	P40566	764 aa		7.19	□□□□□ -1.26
ECM1	YAL059W	NAM8	Q00539	523 aa	Known RBP	7.19	□□□□□ -1.26
ECM1	YAL059W	PSH1	Q12161	406 aa		7.19	□□□□□ -1.26
ECM1	YAL059W	PDC6	P26263	563 aa	Known RBP	7.18	□□□□□ -1.26
ECM1	YAL059W	PNP1	Q05788	311 aa		7.18	□□□□□ -1.26
ECM1	YAL059W	YDL176W	Q12027	708 aa		7.18	□□□□□ -1.26
ECM1	YAL059W	TY1A-MR1	Q04215	440 aa		7.17	□□□□□ -1.26
ECM1	YAL059W	URN1	Q06525	465 aa	Known RBP	7.17	□□□□□ -1.26
ECM1	YAL059W	CDC3	P32457	520 aa	Known RBP	7.16	□□□□□ -1.26
ECM1	YAL059W	YBR197C	P38306	217 aa		7.16	□□□□□ -1.26
ECM1	YAL059W	YTA6	P40328	754 aa		7.16	□□□□□ -1.26
ECM1	YAL059W	UTP4	Q06679	776 aa	Known RBP	7.16	□□□□□ -1.26
ECM1	YAL059W	ISC10	P32645	267 aa		7.15	□□□□□ -1.26
ECM1	YAL059W	RGA1	P39083	1007 aa		7.15	□□□□□ -1.26
ECM1	YAL059W	CCP1	P00431	361 aa		7.14	□□□□□ -1.27
ECM1	YAL059W	ALD2	P47771	506 aa		7.14	□□□□□ -1.27
ECM1	YAL059W	NOP7	P53261	605 aa	Known RBP	7.14	□□□□□ -1.27
ECM1	YAL059W	LEU1	P07264	779 aa	Known RBP	7.13	□□□□□ -1.27
ECM1	YAL059W	BOL3	P39724	118 aa		7.13	□□□□□ -1.27
ECM1	YAL059W	MRPL33	P20084	86 aa		7.12	□□□□□ -1.27
ECM1	YAL059W	KAR5	Q04746	504 aa		7.12	□□□□□ -1.27
ECM1	YAL059W	RRN6	P32786	894 aa		7.11	□□□□□ -1.27
ECM1	YAL059W	CUZ1	P53899	274 aa		7.11	□□□□□ -1.27
ECM1	YAL059W	FUR4	P05316	633 aa	Known RBP	7.1	□□□□□ -1.27
ECM1	YAL059W	QDR2	P40474	542 aa		7.1	□□□□□ -1.27
ECM1	YAL059W	MTO1	P53070	669 aa		7.1	□□□□□ -1.27
ECM1	YAL059W	STB3	Q12427	513 aa		7.1	□□□□□ -1.27
ECM1	YAL059W	VMA3	P25515	160 aa		7.09	□□□□□ -1.27
ECM1	YAL059W	BOI1	P38041	980 aa	Known RBP	7.09	□□□□□ -1.27
ECM1	YAL059W	MRPL16	P38064	232 aa		7.09	□□□□□ -1.27
ECM1	YAL059W	RGP1	P16664	663 aa		7.08	□□□□□ -1.28
ECM1	YAL059W	DIT1	P21623	536 aa		7.08	□□□□□ -1.28
ECM1	YAL059W	YMR265C	Q03508	461 aa	Known RBP	7.08	□□□□□ -1.28
ECM1	YAL059W	LSO1	Q3E827	93 aa		7.08	□□□□□ -1.28
ECM1	YAL059W	KAP122	P32767	1081 aa		7.07	□□□□□ -1.28
ECM1	YAL059W	HAT1	Q12341	374 aa		7.07	□□□□□ -1.28
ECM1	YAL059W	RPB10	P22139	70 aa		7.06	□□□□□ -1.28
ECM1	YAL059W	YPL062W	Q02781	134 aa		7.06	□□□□□ -1.28

Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms