RNA–Protein interactions for RNA: ENST00000641523.1

CASC19-238, Transcript of cancer susceptibility 19, human

BASIC

Gene CASC19, Length 1,558 nt, Biotype lincRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC19-238	ENST00000641523	POTEB2	H3BUK9	544 aa		10.64	□□□□□ -0.71
CASC19-238	ENST00000641523	CLCN1	P35523	988 aa		10.64	□□□□□ -0.71
CASC19-238	ENST00000641523	DOK7	Q18PE1	504 aa		10.63	□□□□□ -0.71
CASC19-238	ENST00000641523	NLRP7	Q8WX94	980 aa		10.63	□□□□□ -0.71
CASC19-238	ENST00000641523	ADAM33	Q9BZ11	813 aa		10.63	□□□□□ -0.71
CASC19-238	ENST00000641523	GPCPD1	Q9NPB8	672 aa		10.63	□□□□□ -0.71
CASC19-238	ENST00000641523	ARAP1	Q96P48	1450 aa		10.62	□□□□□ -0.71
CASC19-238	ENST00000641523	ERICH3	Q5RHP9	1530 aa		10.61	□□□□□ -0.71
CASC19-238	ENST00000641523	SSTR3	P32745	418 aa	Predicted RBP	10.6	□□□□□ -0.71
CASC19-238	ENST00000641523	METTL3	Q86U44	580 aa	Known RBP	10.6	□□□□□ -0.71
CASC19-238	ENST00000641523	CERK	Q8TCT0	537 aa		10.6	□□□□□ -0.71
CASC19-238	ENST00000641523	ZMYND15	Q9H091	742 aa		10.6	□□□□□ -0.71
CASC19-238	ENST00000641523	GOPC	Q9HD26	462 aa		10.6	□□□□□ -0.71
CASC19-238	ENST00000641523	ADGRG1	Q9Y653	693 aa		10.6	□□□□□ -0.71
CASC19-238	ENST00000641523	FHAD1	B1AJZ9	1412 aa		10.6	□□□□□ -0.71
CASC19-238	ENST00000641523	GRIN2A	Q12879	1464 aa		10.6	□□□□□ -0.71
CASC19-238	ENST00000641523	OAT	P04181	439 aa		10.6	□□□□□ -0.71
CASC19-238	ENST00000641523	GPR153	Q6NV75	609 aa		10.6	□□□□□ -0.71
CASC19-238	ENST00000641523	ADAMTS12	P58397	1594 aa		10.59	□□□□□ -0.71
CASC19-238	ENST00000641523	HOMEZ	Q8IX15	550 aa		10.58	□□□□□ -0.72
CASC19-238	ENST00000641523	RIMBP2	O15034	1052 aa		10.57	□□□□□ -0.72
CASC19-238	ENST00000641523	TTC13	Q8NBP0	860 aa		10.57	□□□□□ -0.72
CASC19-238	ENST00000641523	PXYLP1	Q8TE99	480 aa		10.57	□□□□□ -0.72
CASC19-238	ENST00000641523	PCMTD1	Q96MG8	357 aa	Predicted RBP	10.57	□□□□□ -0.72
CASC19-238	ENST00000641523	ZSWIM6	Q9HCJ5	1215 aa		10.56	□□□□□ -0.72
CASC19-238	ENST00000641523	LHX6	Q9UPM6	363 aa		10.56	□□□□□ -0.72
CASC19-238	ENST00000641523	NUP160	Q12769	1436 aa		10.56	□□□□□ -0.72
CASC19-238	ENST00000641523	PRSS12	P56730	875 aa		10.56	□□□□□ -0.72
CASC19-238	ENST00000641523	ZNF710	Q8N1W2	664 aa		10.56	□□□□□ -0.72
CASC19-238	ENST00000641523	BEGAIN	Q9BUH8	593 aa		10.56	□□□□□ -0.72
CASC19-238	ENST00000641523	SH3D19	Q5HYK7	790 aa		10.55	□□□□□ -0.72
CASC19-238	ENST00000641523	CDCA7L	Q96GN5	454 aa		10.55	□□□□□ -0.72
CASC19-238	ENST00000641523	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.55	□□□□□ -0.72
CASC19-238	ENST00000641523	SCUBE2	Q9NQ36	999 aa		10.54	□□□□□ -0.72
CASC19-238	ENST00000641523	RBM27	Q9P2N5	1060 aa	Known RBP	10.54	□□□□□ -0.72
CASC19-238	ENST00000641523	COL9A1	P20849	921 aa		10.52	□□□□□ -0.72
CASC19-238	ENST00000641523	RSPH6A	Q9H0K4	717 aa		10.52	□□□□□ -0.72
CASC19-238	ENST00000641523	FAM198A	Q9UFP1	575 aa		10.52	□□□□□ -0.72
CASC19-238	ENST00000641523	KIF27	Q86VH2	1401 aa		10.52	□□□□□ -0.73
CASC19-238	ENST00000641523	CEP170	Q5SW79	1584 aa		10.51	□□□□□ -0.73
CASC19-238	ENST00000641523	SKIV2L	Q15477	1246 aa	Known RBP	10.51	□□□□□ -0.73
CASC19-238	ENST00000641523	PPP4R3B	Q5MIZ7	849 aa		10.51	□□□□□ -0.73
CASC19-238	ENST00000641523	RBM46	Q8TBY0	533 aa	Known RBP	10.51	□□□□□ -0.73
CASC19-238	ENST00000641523	MAMSTR	Q6ZN01	415 aa		10.5	□□□□□ -0.73
CASC19-238	ENST00000641523	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.5	□□□□□ -0.73
CASC19-238	ENST00000641523	POLR3E	Q9NVU0	708 aa		10.5	□□□□□ -0.73
CASC19-238	ENST00000641523	FLII	Q13045	1269 aa		10.49	□□□□□ -0.73
CASC19-238	ENST00000641523	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.49	□□□□□ -0.73
CASC19-238	ENST00000641523	BCL2L12	Q9HB09	334 aa		10.48	□□□□□ -0.73
CASC19-238	ENST00000641523	SHROOM2	Q13796	1616 aa		10.48	□□□□□ -0.73
CASC19-238	ENST00000641523	ONECUT3	O60422	494 aa	Predicted RBP	10.48	□□□□□ -0.73
CASC19-238	ENST00000641523	TSKS	Q9UJT2	592 aa		10.47	□□□□□ -0.73
CASC19-238	ENST00000641523	RCCD1	A6NED2	376 aa		10.46	□□□□□ -0.74
CASC19-238	ENST00000641523	C3orf80	F5H4A9	247 aa		10.46	□□□□□ -0.74
CASC19-238	ENST00000641523	EYA1	Q99502	592 aa		10.46	□□□□□ -0.74
CASC19-238	ENST00000641523	CUL7	Q14999	1698 aa		10.46	□□□□□ -0.74
CASC19-238	ENST00000641523	IGF1R	P08069	1367 aa		10.46	□□□□□ -0.74
CASC19-238	ENST00000641523	MYSM1	Q5VVJ2	828 aa		10.45	□□□□□ -0.74
CASC19-238	ENST00000641523	PRG4	Q92954	1404 aa	Predicted RBP	10.44	□□□□□ -0.74
CASC19-238	ENST00000641523	PSD	A5PKW4	1024 aa	Predicted RBP	10.44	□□□□□ -0.74
CASC19-238	ENST00000641523	PTPRE	P23469	700 aa		10.44	□□□□□ -0.74
CASC19-238	ENST00000641523	RUSC2	Q8N2Y8	1516 aa		10.44	□□□□□ -0.74
CASC19-238	ENST00000641523	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.43	□□□□□ -0.74
CASC19-238	ENST00000641523	PPP1R3G	B7ZBB8	358 aa		10.43	□□□□□ -0.74
CASC19-238	ENST00000641523	TBC1D2	Q9BYX2	928 aa		10.43	□□□□□ -0.74
CASC19-238	ENST00000641523	KIAA0586	Q9BVV6	1533 aa		10.43	□□□□□ -0.74
CASC19-238	ENST00000641523	NUDT18	Q6ZVK8	323 aa		10.43	□□□□□ -0.74
CASC19-238	ENST00000641523	ERCC6L2	Q5T890	1561 aa		10.42	□□□□□ -0.74
CASC19-238	ENST00000641523	HOXB1	P14653	301 aa	Predicted RBP	10.42	□□□□□ -0.74
CASC19-238	ENST00000641523	SNPH	O15079	494 aa		10.41	□□□□□ -0.74
CASC19-238	ENST00000641523	PNMA3	Q9UL41	463 aa		10.41	□□□□□ -0.74
CASC19-238	ENST00000641523	CARMIL1	Q5VZK9	1371 aa		10.4	□□□□□ -0.74
CASC19-238	ENST00000641523	CLK2	P49760	499 aa	Known RBP	10.4	□□□□□ -0.74
CASC19-238	ENST00000641523	TATDN2	Q93075	761 aa		10.4	□□□□□ -0.74
CASC19-238	ENST00000641523	CLUAP1	Q96AJ1	413 aa		10.4	□□□□□ -0.74
CASC19-238	ENST00000641523	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.4	□□□□□ -0.74
CASC19-238	ENST00000641523	TRIM6-TRIM34	B2RNG4	842 aa		10.39	□□□□□ -0.75
CASC19-238	ENST00000641523	MCM6	Q14566	821 aa		10.39	□□□□□ -0.75
CASC19-238	ENST00000641523	C1orf115	Q9H7X2	142 aa		10.39	□□□□□ -0.75
CASC19-238	ENST00000641523	ARID3C	A6NKF2	412 aa		10.38	□□□□□ -0.75
CASC19-238	ENST00000641523	DDX11L8	A8MPP1	907 aa		10.38	□□□□□ -0.75
CASC19-238	ENST00000641523	NBPF26	B4DH59	902 aa		10.38	□□□□□ -0.75
CASC19-238	ENST00000641523	SMAP	O00193	183 aa		10.38	□□□□□ -0.75
CASC19-238	ENST00000641523	DNAJB2	P25686	324 aa		10.38	□□□□□ -0.75
CASC19-238	ENST00000641523	PROX2	Q3B8N5	592 aa		10.38	□□□□□ -0.75
CASC19-238	ENST00000641523	PACS2	Q86VP3	889 aa		10.38	□□□□□ -0.75
CASC19-238	ENST00000641523	SPIRE2	Q8WWL2	714 aa		10.38	□□□□□ -0.75
CASC19-238	ENST00000641523	CD46	P15529	392 aa		10.37	□□□□□ -0.75
CASC19-238	ENST00000641523	UBTF	P17480	764 aa	Known RBP	10.37	□□□□□ -0.75
CASC19-238	ENST00000641523	DIXDC1	Q155Q3	683 aa		10.37	□□□□□ -0.75
CASC19-238	ENST00000641523	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.37	□□□□□ -0.75
CASC19-238	ENST00000641523	KCNK17	Q96T54	332 aa		10.37	□□□□□ -0.75
CASC19-238	ENST00000641523	LIMD1	Q9UGP4	676 aa		10.37	□□□□□ -0.75
CASC19-238	ENST00000641523	CARMIL2	Q6F5E8	1435 aa		10.36	□□□□□ -0.75
CASC19-238	ENST00000641523	ARID3A	Q99856	593 aa		10.35	□□□□□ -0.75
CASC19-238	ENST00000641523		A6NJR5	290 aa		10.35	□□□□□ -0.75
CASC19-238	ENST00000641523	RIC3	Q7Z5B4	369 aa		10.35	□□□□□ -0.75
CASC19-238	ENST00000641523	TMEM134	Q9H6X4	195 aa		10.35	□□□□□ -0.75
CASC19-238	ENST00000641523	APBB1	O00213	710 aa		10.34	□□□□□ -0.75
CASC19-238	ENST00000641523	NUTM1	Q86Y26	1132 aa		10.34	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms