RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 BCANQ96GW7 911 aa21.24■□□□□ 0.99
PNKP-223ENST00000629179 SLC26A8Q96RN1 970 aa21.24■□□□□ 0.99
PNKP-223ENST00000629179 PPP1R15AO75807 674 aaPredicted RBP21.23■□□□□ 0.99
PNKP-223ENST00000629179 HDGFP51858 240 aaKnown RBP21.23■□□□□ 0.99
PNKP-223ENST00000629179 CLTCL1P53675 1640 aa21.22■□□□□ 0.99
PNKP-223ENST00000629179 SETD5Q9C0A6 1442 aa21.22■□□□□ 0.99
PNKP-223ENST00000629179 TRPM2O94759 1503 aa21.21■□□□□ 0.99
PNKP-223ENST00000629179 KIF1BO60333 1816 aa21.21■□□□□ 0.99
PNKP-223ENST00000629179 UBAP1LF5GYI3 381 aa21.2■□□□□ 0.98
PNKP-223ENST00000629179 FOXD1Q16676 465 aa21.2■□□□□ 0.98
PNKP-223ENST00000629179 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.2■□□□□ 0.98
PNKP-223ENST00000629179 PLEKHG1Q9ULL1 1385 aa21.19■□□□□ 0.98
PNKP-223ENST00000629179 MPHOSPH9Q99550 1183 aa21.18■□□□□ 0.98
PNKP-223ENST00000629179 ZNF326Q5BKZ1 582 aaKnown RBP21.17■□□□□ 0.98
PNKP-223ENST00000629179 LRRC7Q96NW7 1537 aa21.17■□□□□ 0.98
PNKP-223ENST00000629179 RAB3GAP2Q9H2M9 1393 aa21.15■□□□□ 0.98
PNKP-223ENST00000629179 XIRP1Q702N8 1843 aaKnown RBP21.14■□□□□ 0.97
PNKP-223ENST00000629179 KCNA6P17658 529 aa21.14■□□□□ 0.97
PNKP-223ENST00000629179 CHD2O14647 1828 aaKnown RBP21.13■□□□□ 0.97
PNKP-223ENST00000629179 TBX22Q9Y458 520 aa21.11■□□□□ 0.97
PNKP-223ENST00000629179 ADAMTS13Q76LX8 1427 aa21.11■□□□□ 0.97
PNKP-223ENST00000629179 ACIN1Q9UKV3 1341 aaKnown RBP21.1■□□□□ 0.97
PNKP-223ENST00000629179 TOM1O60784 492 aa21.1■□□□□ 0.97
PNKP-223ENST00000629179 NEXMIFQ5QGS0 1516 aa21.09■□□□□ 0.97
PNKP-223ENST00000629179 PROSER2Q86WR7 435 aaPredicted RBP21.08■□□□□ 0.97
PNKP-223ENST00000629179 SCAF1Q9H7N4 1312 aaKnown RBP21.07■□□□□ 0.96
PNKP-223ENST00000629179 NWD1Q149M9 1564 aa21.07■□□□□ 0.96
PNKP-223ENST00000629179 PIP4K2BP78356 416 aa21.07■□□□□ 0.96
PNKP-223ENST00000629179 RBM33Q96EV2 1170 aaKnown RBP21.07■□□□□ 0.96
PNKP-223ENST00000629179 ALKQ9UM73 1620 aa21.06■□□□□ 0.96
PNKP-223ENST00000629179 NRXN3Q9Y4C0 1643 aa21.06■□□□□ 0.96
PNKP-223ENST00000629179 DIP2AQ14689 1571 aa21.06■□□□□ 0.96
PNKP-223ENST00000629179 TMEM94Q12767 1356 aa21.05■□□□□ 0.96
PNKP-223ENST00000629179 CCDC144AA2RUR9 1427 aa21.04■□□□□ 0.96
PNKP-223ENST00000629179 NKTRP30414 1462 aaKnown RBP21.03■□□□□ 0.96
PNKP-223ENST00000629179 PPLO60437 1756 aa21.02■□□□□ 0.96
PNKP-223ENST00000629179 SETBP1Q9Y6X0 1596 aa21.02■□□□□ 0.96
PNKP-223ENST00000629179 RPGRIP1LQ68CZ1 1315 aa21.02■□□□□ 0.95
PNKP-223ENST00000629179 PIK3R4Q99570 1358 aa21■□□□□ 0.95
PNKP-223ENST00000629179 VGFO15240 615 aaPredicted RBP21■□□□□ 0.95
PNKP-223ENST00000629179 HRCP23327 699 aa21■□□□□ 0.95
PNKP-223ENST00000629179 RGL3Q3MIN7 710 aa21■□□□□ 0.95
PNKP-223ENST00000629179 PTPRUQ92729 1446 aa21■□□□□ 0.95
PNKP-223ENST00000629179 AMOTL2Q9Y2J4 779 aa20.99■□□□□ 0.95
PNKP-223ENST00000629179 SPATA31E1Q6ZUB1 1445 aa20.97■□□□□ 0.95
PNKP-223ENST00000629179 METP08581 1390 aa20.97■□□□□ 0.95
PNKP-223ENST00000629179 HSPA1LP34931 641 aa20.95■□□□□ 0.94
PNKP-223ENST00000629179 IFT172Q9UG01 1749 aa20.94■□□□□ 0.94
PNKP-223ENST00000629179 SETD1AO15047 1707 aaKnown RBP20.92■□□□□ 0.94
PNKP-223ENST00000629179 XRN1Q8IZH2 1706 aaKnown RBP20.92■□□□□ 0.94
PNKP-223ENST00000629179 ADGRF5Q8IZF2 1346 aa20.92■□□□□ 0.94
PNKP-223ENST00000629179 MSH6P52701 1360 aa20.92■□□□□ 0.94
PNKP-223ENST00000629179 ANKRD30BQ9BXX2 1392 aa20.92■□□□□ 0.94
PNKP-223ENST00000629179 C14orf37Q86TY3 774 aa20.91■□□□□ 0.94
PNKP-223ENST00000629179 NCOA3Q9Y6Q9 1424 aa20.89■□□□□ 0.94
PNKP-223ENST00000629179 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.88■□□□□ 0.93
PNKP-223ENST00000629179 C19orf44Q9H6X5 657 aa20.86■□□□□ 0.93
PNKP-223ENST00000629179 SLAIN2Q9P270 581 aa20.85■□□□□ 0.93
PNKP-223ENST00000629179 FAM135BQ49AJ0 1406 aa20.85■□□□□ 0.93
PNKP-223ENST00000629179 ROBO1Q9Y6N7 1651 aa20.84■□□□□ 0.93
PNKP-223ENST00000629179 ATF3P18847 181 aa20.82■□□□□ 0.92
PNKP-223ENST00000629179 CADPS2Q86UW7 1296 aa20.81■□□□□ 0.92
PNKP-223ENST00000629179 PIK3C2GO75747 1445 aa20.8■□□□□ 0.92
PNKP-223ENST00000629179 TMEM132EQ6IEE7 984 aa20.79■□□□□ 0.92
PNKP-223ENST00000629179 ROBO2Q9HCK4 1378 aa20.79■□□□□ 0.92
PNKP-223ENST00000629179 NALCNQ8IZF0 1738 aa20.78■□□□□ 0.92
PNKP-223ENST00000629179 MYOM2P54296 1465 aa20.77■□□□□ 0.92
PNKP-223ENST00000629179 DISP3Q9P2K9 1392 aa20.77■□□□□ 0.92
PNKP-223ENST00000629179 STK26Q9P289 416 aa20.77■□□□□ 0.92
PNKP-223ENST00000629179 KDM2AQ9Y2K7 1162 aa20.77■□□□□ 0.92
PNKP-223ENST00000629179 PTCH1Q13635 1447 aa20.77■□□□□ 0.91
PNKP-223ENST00000629179 NRXN1Q9ULB1 1477 aa20.76■□□□□ 0.91
PNKP-223ENST00000629179 DCAF11Q8TEB1 546 aa20.76■□□□□ 0.91
PNKP-223ENST00000629179 C14orf93Q9H972 538 aaKnown RBP20.76■□□□□ 0.91
PNKP-223ENST00000629179 ASXL1Q8IXJ9 1541 aa20.76■□□□□ 0.91
PNKP-223ENST00000629179 ADGRL3Q9HAR2 1447 aa20.76■□□□□ 0.91
PNKP-223ENST00000629179 CFAP70Q5T0N1 1121 aa20.75■□□□□ 0.91
PNKP-223ENST00000629179 DCCP43146 1447 aa20.75■□□□□ 0.91
PNKP-223ENST00000629179 PRAG1Q86YV5 1406 aa20.74■□□□□ 0.91
PNKP-223ENST00000629179 LRPPRCP42704 1394 aaKnown RBP20.73■□□□□ 0.91
PNKP-223ENST00000629179 PHLPP1O60346 1717 aa20.73■□□□□ 0.91
PNKP-223ENST00000629179 TRIM26Q12899 539 aaPredicted RBP20.72■□□□□ 0.91
PNKP-223ENST00000629179 DHX57Q6P158 1386 aaKnown RBP20.72■□□□□ 0.91
PNKP-223ENST00000629179 WAPLQ7Z5K2 1190 aa20.71■□□□□ 0.91
PNKP-223ENST00000629179 LAMC1P11047 1609 aa20.71■□□□□ 0.91
PNKP-223ENST00000629179 ABCC11Q96J66 1382 aa20.71■□□□□ 0.91
PNKP-223ENST00000629179 MST1RQ04912 1400 aa20.7■□□□□ 0.9
PNKP-223ENST00000629179 YTHDC2Q9H6S0 1430 aaKnown RBP20.7■□□□□ 0.9
PNKP-223ENST00000629179 KNDC1Q76NI1 1749 aa20.7■□□□□ 0.9
PNKP-223ENST00000629179 MED1Q15648 1581 aaPredicted RBP20.69■□□□□ 0.9
PNKP-223ENST00000629179 BRINP3Q76B58 766 aa20.69■□□□□ 0.9
PNKP-223ENST00000629179 TECPR2O15040 1411 aa20.69■□□□□ 0.9
PNKP-223ENST00000629179 PLEKHH1Q9ULM0 1364 aa20.67■□□□□ 0.9
PNKP-223ENST00000629179 STAC3Q96MF2 364 aa20.66■□□□□ 0.9
PNKP-223ENST00000629179 COL16A1Q07092 1604 aaPredicted RBP20.64■□□□□ 0.9
PNKP-223ENST00000629179 AHDC1Q5TGY3 1603 aaPredicted RBP20.64■□□□□ 0.89
PNKP-223ENST00000629179 C1orf167Q5SNV9 1468 aa20.63■□□□□ 0.89
PNKP-223ENST00000629179 SIRT1Q96EB6 747 aa20.63■□□□□ 0.89
PNKP-223ENST00000629179 SIN3AQ96ST3 1273 aa20.63■□□□□ 0.89
PNKP-223ENST00000629179 ADGRB1O14514 1584 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms